| 107 |
0.003422 |
0.1114 |
b0415 |
ribE |
-10.96 |
0.064092 |
190 -- 254 |
4 -- 58 |
riboflavin synthase beta chain |
|
_____________189_________________________________________________________________255\n_____________|___________________________________________________________________|\n5'-CGG...AACCC________AAAAU_A___U___U_A_________UUGCUAC____GA____C_____C__CA_____AUCGC...GUG-3'\n______________GAAGGAAG_____G_ACA_UAU_G_AGC_UAACG_______CCCG__CGCU__GCGU_GC__UCACC\n______________:|||||||_____|_|||_|||_|_|||_:||||_______|||:__||||__:|||_||__|||||\n______________UUUCCUUC_____C_UGU_AUA_C_UCG_GUUGC_______GGGU__GCGA__UGCA_CG__AGUGG\n3'-UUU...AGUUU________AUU_______U___C_____C________________A_____AC____A__UA_____ACG-5'\n_____________|___________________________________________________________________|\n_____________59__________________________________________________________________3\n |
191 -- 197 |
51 -- 57 |
-41.366 kcal/mol |
13.5359 kcal/mol |
16.8715 kcal/mol |
189 255@LB@ | |@LB@5'-CGG...AACCC AAAAU A U U A UUGCUAC GA C C CA AUCGC...GUG-3'@LB@ GAAGGAAG G ACA UAU G AGC UAACG CCCG CGCU GCGU GC UCACC@LB@ :||||||| | ||| ||| | ||| :|||| |||: |||| :||| || |||||@LB@ UUUCCUUC C UGU AUA C UCG GUUGC GGGU GCGA UGCA CG AGUGG@LB@3'-UUU...AGUUU AUU U C C A AC A UA ACG-5'@LB@ | |@LB@ 59 3@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -41.366 kcal/mol@LB@Unfolding Energy - mRNA 13.5359 kcal/mol@LB@Unfolding Energy - sRNA 16.8715 kcal/mol@LB@@LB@Position - mRNA 190 -- 254@LB@Position - sRNA 4 -- 58@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 161 |
0.006314 |
0.1377 |
b4099 |
phnI |
-7.36 |
0.387929 |
194 -- 228 |
46 -- 79 |
ribophosphonate triphosphate synthase complex putative catalytic subunit |
|
_____________193__________________________________229\n_____________|____________________________________|\n5'-AGC...GGAGG______G_____C__UGC___U_________C____AGGCG...GCG-3'\n______________UGUGCU_AUGUA_GU____CG_GAAAGGGGG_GAGA\n______________||||||_|||:|_||____|:_:|||||::|_:|||\n______________ACACGA_UACGU_CA____GU_UUUUCCUUC_UUCU\n3'-UUU...AGUUA_______________UUAA__U_________A____GUUAU...ACG-5'\n_____________|____________________________________|\n_____________80___________________________________45\n |
217 -- 223 |
51 -- 57 |
-26.8268 kcal/mol |
14.1464 kcal/mol |
5.32077 kcal/mol |
193 229@LB@ | |@LB@5'-AGC...GGAGG G C UGC U C AGGCG...GCG-3'@LB@ UGUGCU AUGUA GU CG GAAAGGGGG GAGA@LB@ |||||| |||:| || |: :|||||::| :|||@LB@ ACACGA UACGU CA GU UUUUCCUUC UUCU@LB@3'-UUU...AGUUA UUAA U A GUUAU...ACG-5'@LB@ | |@LB@ 80 45@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -26.8268 kcal/mol@LB@Unfolding Energy - mRNA 14.1464 kcal/mol@LB@Unfolding Energy - sRNA 5.32077 kcal/mol@LB@@LB@Position - mRNA 194 -- 228@LB@Position - sRNA 46 -- 79@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 122 |
0.004264 |
0.1231 |
b2914 |
rpiA |
-10.11 |
0.103884 |
190 -- 234 |
45 -- 89 |
ribose 5-phosphate isomerase constitutive |
|
_____________189______________________________________________235\n_____________|________________________________________________|\n5'-GAA...CACAG_____A____CA__AC______GAUGA___G_______C_________GGGCG...CAC-3'\n______________GCGAA_CGAU__UG____GCAG_____AUU_AAAAAAG__AGUAGGAU\n______________:||||_|:||__||____||||_____|||_|||||||__||||:||:\n______________UGCUU_GUUA__AC____CGUC_____UAA_UUUUUUC__UCAUUCUG\n3'-UUU...CAGCA_____A____AC__GAUA____AU______G_______CU________UUAUA...ACG-5'\n_____________|________________________________________________|\n_____________90_______________________________________________44\n |
228 -- 234 |
45 -- 51 |
-27.3521 kcal/mol |
11.527 kcal/mol |
5.72096 kcal/mol |
189 235@LB@ | |@LB@5'-GAA...CACAG A CA AC GAUGA G C GGGCG...CAC-3'@LB@ GCGAA CGAU UG GCAG AUU AAAAAAG AGUAGGAU@LB@ :|||| |:|| || |||| ||| ||||||| ||||:||:@LB@ UGCUU GUUA AC CGUC UAA UUUUUUC UCAUUCUG@LB@3'-UUU...CAGCA A AC GAUA AU G CU UUAUA...ACG-5'@LB@ | |@LB@ 90 44@LB@@LB@@LB@Energy -10.11 kcal/mol@LB@Hybridization Energy -27.3521 kcal/mol@LB@Unfolding Energy - mRNA 11.527 kcal/mol@LB@Unfolding Energy - sRNA 5.72096 kcal/mol@LB@@LB@Position - mRNA 190 -- 234@LB@Position - sRNA 45 -- 89@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 200 |
0.008935 |
0.1548 |
b1427 |
rimL |
-11.51 |
0.046463 |
223 -- 252 |
68 -- 89 |
ribosomal-protein-L7/L12-serine acetyltransferase |
|
_____________222____________________________253\n_____________|______________________________|\n5'-GAU...AGUAA________C___AAUUACA_____U_____AAAAU...CCU-3'\n______________GCGAAUCA_UUG_______UGCUG_UGCAG\n______________:|||||||_|||_______||||:_|||||\n______________UGCUUAGU_AAC_______ACGAU_ACGUC\n3'-UUU...CAGCA________U_____________________AUUAA...ACG-5'\n_____________|______________________________|\n_____________90_____________________________67\n |
224 -- 230 |
82 -- 88 |
-23.0393 kcal/mol |
7.0303 kcal/mol |
4.506 kcal/mol |
222 253@LB@ | |@LB@5'-GAU...AGUAA C AAUUACA U AAAAU...CCU-3'@LB@ GCGAAUCA UUG UGCUG UGCAG@LB@ :||||||| ||| ||||: |||||@LB@ UGCUUAGU AAC ACGAU ACGUC@LB@3'-UUU...CAGCA U AUUAA...ACG-5'@LB@ | |@LB@ 90 67@LB@@LB@@LB@Energy -11.51 kcal/mol@LB@Hybridization Energy -23.0393 kcal/mol@LB@Unfolding Energy - mRNA 7.0303 kcal/mol@LB@Unfolding Energy - sRNA 4.506 kcal/mol@LB@@LB@Position - mRNA 223 -- 252@LB@Position - sRNA 68 -- 89@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 17 |
4.003e-05 |
0.007917 |
b1066 |
rimJ |
-10.62 |
0.078044 |
194 -- 220 |
65 -- 91 |
ribosomal-protein-S5-alanine N-acetyltransferase |
|
_____________193___________________________221\n_____________|_____________________________|\n5'-AUU...AGUAG____A____GU__________C_______CGUGC...AUU-3'\n______________GUAU_GAAU___UUG_GCUAU_GCAGUAA\n______________|||:_||||___|||_|||||_|||||||\n______________CAUG_CUUA___AAC_CGAUA_CGUCAUU\n3'-UUU...CGCAG_________GUU___A_____________AAGUU...ACG-5'\n_____________|_____________________________|\n_____________92____________________________64\n |
214 -- 220 |
65 -- 71 |
-21.0331 kcal/mol |
5.8812 kcal/mol |
4.53558 kcal/mol |
193 221@LB@ | |@LB@5'-AUU...AGUAG A GU C CGUGC...AUU-3'@LB@ GUAU GAAU UUG GCUAU GCAGUAA@LB@ |||: |||| ||| ||||| |||||||@LB@ CAUG CUUA AAC CGAUA CGUCAUU@LB@3'-UUU...CGCAG GUU A AAGUU...ACG-5'@LB@ | |@LB@ 92 64@LB@@LB@@LB@Energy -10.62 kcal/mol@LB@Hybridization Energy -21.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.8812 kcal/mol@LB@Unfolding Energy - sRNA 4.53558 kcal/mol@LB@@LB@Position - mRNA 194 -- 220@LB@Position - sRNA 65 -- 91@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 191 |
0.008524 |
0.1548 |
b3203 |
hpf |
-8.75 |
0.209451 |
199 -- 206 |
68 -- 75 |
ribosome hibernation promoting factor HPF; stabilizes 100S dimers |
|
_____________198______207\n_____________|________|\n5'-GAU...AGACA________CUCAA...GAA-3'\n______________CUAUGCAG\n______________||||||||\n______________GAUACGUC\n3'-UUU...AACAC________AUUAA...ACG-5'\n_____________|________|\n_____________76_______67\n |
200 -- 206 |
68 -- 74 |
-11.4515 kcal/mol |
0.966058 kcal/mol |
1.73443 kcal/mol |
198 207@LB@ | |@LB@5'-GAU...AGACA CUCAA...GAA-3'@LB@ CUAUGCAG@LB@ ||||||||@LB@ GAUACGUC@LB@3'-UUU...AACAC AUUAA...ACG-5'@LB@ | |@LB@ 76 67@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -11.4515 kcal/mol@LB@Unfolding Energy - mRNA 0.966058 kcal/mol@LB@Unfolding Energy - sRNA 1.73443 kcal/mol@LB@@LB@Position - mRNA 199 -- 206@LB@Position - sRNA 68 -- 75@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 49 |
0.0005476 |
0.03937 |
b2432 |
yfeY |
-8.84 |
0.200409 |
189 -- 199 |
48 -- 58 |
RpoE-regulated lipoprotein |
|
_____________188_________200\n_____________|___________|\n5'-GCU...UAACC___________CAUGA...ACU-3'\n______________AAAGGAAGUGA\n______________|||||||||:|\n______________UUUCCUUCAUU\n3'-UUU...AGUUU___________CUGUU...ACG-5'\n_____________|___________|\n_____________59__________47\n |
193 -- 199 |
48 -- 54 |
-12.8959 kcal/mol |
3.31176 kcal/mol |
0.745549 kcal/mol |
188 200@LB@ | |@LB@5'-GCU...UAACC CAUGA...ACU-3'@LB@ AAAGGAAGUGA@LB@ |||||||||:|@LB@ UUUCCUUCAUU@LB@3'-UUU...AGUUU CUGUU...ACG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -12.8959 kcal/mol@LB@Unfolding Energy - mRNA 3.31176 kcal/mol@LB@Unfolding Energy - sRNA 0.745549 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 48 -- 54@LB@ |
| 27 |
0.0001238 |
0.01616 |
b0081 |
mraZ |
-12.77 |
0.021128 |
157 -- 196 |
45 -- 91 |
RsmH methytransferase inhibitor |
|
_____________156_____________________________________________197\n_____________|_______________________________________________|\n5'-GAU...UUUCA___G____________GG_____A____GG___U_____________UGGCA...AAA-3'\n______________GUG_GA___AAUUGUG____GCA__AGU__GAA_AAGG_GGUGAGGC\n______________||:_||___|||||||____|||__|:|__:||_||||_:||:||:|\n______________CAU_CU___UUAACAC____CGU__UUA__UUU_UUCC_UCAUUCUG\n3'-UUU...CGCAG___G__UAG_______GAUA___CA___AG___U____U________UUAUA...ACG-5'\n_____________|_______________________________________________|\n_____________92______________________________________________44\n |
190 -- 196 |
45 -- 51 |
-27.6686 kcal/mol |
9.1766 kcal/mol |
5.72765 kcal/mol |
156 197@LB@ | |@LB@5'-GAU...UUUCA G GG A GG U UGGCA...AAA-3'@LB@ GUG GA AAUUGUG GCA AGU GAA AAGG GGUGAGGC@LB@ ||: || ||||||| ||| |:| :|| |||| :||:||:|@LB@ CAU CU UUAACAC CGU UUA UUU UUCC UCAUUCUG@LB@3'-UUU...CGCAG G UAG GAUA CA AG U U UUAUA...ACG-5'@LB@ | |@LB@ 92 44@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -27.6686 kcal/mol@LB@Unfolding Energy - mRNA 9.1766 kcal/mol@LB@Unfolding Energy - sRNA 5.72765 kcal/mol@LB@@LB@Position - mRNA 157 -- 196@LB@Position - sRNA 45 -- 91@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 79 |
0.001882 |
0.08273 |
b2219 |
atoS |
-12.26 |
0.029240 |
6 -- 44 |
51 -- 94 |
sensory histidine kinase in two-component regulatory system with AtoC |
|
_____________5_____________________________________________45\n_____________|_____________________________________________|\n______5'-UCAGG__________AA__A_____AA_______U__________C____CUCCG...AUA-3'\n______________GUUGUACGAA__GA____GC_____GGUA_UUCAAAGGGG_GAAG\n______________||:|||||||__:|____||_____:|||_||||||:::|_||||\n______________CAGCAUGCUU__UU____CG_____UCAU_AAGUUUUUUC_CUUC\n3'-UUU...AGCCG__________AG__AACA__AUACG____U_______________AUUCU...ACG-5'\n_____________|_____________________________________________|\n_____________95____________________________________________50\n |
9 -- 15 |
85 -- 91 |
-28.4119 kcal/mol |
11.2894 kcal/mol |
4.86774 kcal/mol |
5 45@LB@ | |@LB@ 5'-UCAGG AA A AA U C CUCCG...AUA-3'@LB@ GUUGUACGAA GA GC GGUA UUCAAAGGGG GAAG@LB@ ||:||||||| :| || :||| ||||||:::| ||||@LB@ CAGCAUGCUU UU CG UCAU AAGUUUUUUC CUUC@LB@3'-UUU...AGCCG AG AACA AUACG U AUUCU...ACG-5'@LB@ | |@LB@ 95 50@LB@@LB@@LB@Energy -12.26 kcal/mol@LB@Hybridization Energy -28.4119 kcal/mol@LB@Unfolding Energy - mRNA 11.2894 kcal/mol@LB@Unfolding Energy - sRNA 4.86774 kcal/mol@LB@@LB@Position - mRNA 6 -- 44@LB@Position - sRNA 51 -- 94@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 85 -- 91@LB@ |
| 119 |
0.004048 |
0.119 |
b3607 |
cysE |
-9.06 |
0.179616 |
191 -- 204 |
40 -- 54 |
serine acetyltransferase |
|
_____________190_____________205\n_____________|_______________|\n5'-CGG...CGUGU_______________CGUGU...CGA-3'\n______________GGAGUAAG_CAAUGU\n______________|:||||||_||||:|\n______________CUUCAUUC_GUUAUA\n3'-UUU...UUUUC________U______CCUCG...ACG-5'\n_____________|_______________|\n_____________55______________39\n |
192 -- 198 |
47 -- 53 |
-13.6491 kcal/mol |
2.75521 kcal/mol |
1.82942 kcal/mol |
190 205@LB@ | |@LB@5'-CGG...CGUGU CGUGU...CGA-3'@LB@ GGAGUAAG CAAUGU@LB@ |:|||||| ||||:|@LB@ CUUCAUUC GUUAUA@LB@3'-UUU...UUUUC U CCUCG...ACG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -9.06 kcal/mol@LB@Hybridization Energy -13.6491 kcal/mol@LB@Unfolding Energy - mRNA 2.75521 kcal/mol@LB@Unfolding Energy - sRNA 1.82942 kcal/mol@LB@@LB@Position - mRNA 191 -- 204@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 47 -- 53@LB@ |
