57 |
0.001839 |
0.1212 |
bsu14940 |
ylbA |
-10.08 |
0.303417 |
14 -- 67 |
35 -- 81 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________13___________________________________________68\n_____________|____________________________________________|\n5'-CAU...AAUAC_________AUU______U___C___C___AG____________UGUCA...AAU-3'\n______________CG_UGCAAU____GCAAG_CGG_UGU_AUC__AUCUUUUAUUUU\n______________||_||||||____||||:_|::_:||_|:|__||||:|||||::\n______________GC_ACGUUA____CGUUU_GUU_GCA_UGG__UAGAGAAUAAGG\n3'-AUU...CCGAA__A______GAAC_________A_______G_____________GGUAA...CAA-5'\n_____________|____________________________________________|\n_____________82___________________________________________34\n |
49 -- 55 |
41 -- 47 |
-26.0695 kcal/mol |
9.01529 kcal/mol |
9.64997 kcal/mol |
13 68@LB@ | |@LB@5'-CAU...AAUAC AUU U C C AG UGUCA...AAU-3'@LB@ CG UGCAAU GCAAG CGG UGU AUC AUCUUUUAUUUU@LB@ || |||||| ||||: |:: :|| |:| ||||:|||||::@LB@ GC ACGUUA CGUUU GUU GCA UGG UAGAGAAUAAGG@LB@3'-AUU...CCGAA A GAAC A G GGUAA...CAA-5'@LB@ | |@LB@ 82 34@LB@@LB@@LB@Energy -10.08 kcal/mol@LB@Hybridization Energy -26.0695 kcal/mol@LB@Unfolding Energy - mRNA 9.01529 kcal/mol@LB@Unfolding Energy - sRNA 9.64997 kcal/mol@LB@@LB@Position - mRNA 14 -- 67@LB@Position - sRNA 35 -- 81@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 41 -- 47@LB@ |
84 |
0.003073 |
0.1418 |
bsu31450 |
kinB |
-10.05 |
0.307083 |
220 -- 261 |
31 -- 74 |
sporulation kinase B |
|
_____________219___________________262\n_____________|_____________________|\n5'-AUG...CUUUA______________CU_____ACCAA...UGC-3'\n______________UUUUGUUUCCUAUU__UCUUU\n______________|:||:||:||:|||__|||||\n______________AGAAUAAGGGGUAA__AGAAA\n3'-AUU...GGUAG_____________________CUUUA...CAA-5'\n_____________|_____________________|\n_____________75____________________30\n |
248 -- 254 |
36 -- 42 |
-15.4229 kcal/mol |
1.85906 kcal/mol |
5.65941 kcal/mol |
219 262@LB@ | |@LB@5'-AUG...CUUUA CU ACCAA...UGC-3'@LB@ UUUUGUUUCCUAUU UCUUU@LB@ |:||:||:||:||| |||||@LB@ AGAAUAAGGGGUAA AGAAA@LB@3'-AUU...GGUAG CUUUA...CAA-5'@LB@ | |@LB@ 75 30@LB@@LB@@LB@Energy -10.05 kcal/mol@LB@Hybridization Energy -15.4229 kcal/mol@LB@Unfolding Energy - mRNA 1.85906 kcal/mol@LB@Unfolding Energy - sRNA 5.65941 kcal/mol@LB@@LB@Position - mRNA 220 -- 261@LB@Position - sRNA 31 -- 74@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 36 -- 42@LB@ |
196 |
0.008988 |
0.1751 |
bsu24970 |
pstA |
-9.97 |
0.317060 |
128 -- 176 |
38 -- 86 |
ABC transporter permease |
|
_____________127___________________________________________________177\n_____________|_____________________________________________________|\n5'-AUU...AAUGG___________U__________UGU__U__U________CUG_______G___CUUGU...UUA-3'\n______________GGCUU_G_UGC__UC_UGGUGA___CA_UC_UGUUCAUC___CUUAUUC_CUA\n______________|||||_|_|||__||_|||::|___||_||_|:::||||___|||||||_|:|\n______________CCGAA_C_ACG__AG_ACCGUU___GU_AG_AUGGGUAG___GAAUAAG_GGU\n3'-AUU...ACUUA_____G_A___UU__A______U____U__C________A_________G___AAAGA...CAA-5'\n_____________|_____________________________________________________|\n_____________87____________________________________________________37\n |
166 -- 172 |
42 -- 48 |
-33.9261 kcal/mol |
12.9253 kcal/mol |
13.9524 kcal/mol |
127 177@LB@ | |@LB@5'-AUU...AAUGG U UGU U U CUG G CUUGU...UUA-3'@LB@ GGCUU G UGC UC UGGUGA CA UC UGUUCAUC CUUAUUC CUA@LB@ ||||| | ||| || |||::| || || |:::|||| ||||||| |:|@LB@ CCGAA C ACG AG ACCGUU GU AG AUGGGUAG GAAUAAG GGU@LB@3'-AUU...ACUUA G A UU A U U C A G AAAGA...CAA-5'@LB@ | |@LB@ 87 37@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -33.9261 kcal/mol@LB@Unfolding Energy - mRNA 12.9253 kcal/mol@LB@Unfolding Energy - sRNA 13.9524 kcal/mol@LB@@LB@Position - mRNA 128 -- 176@LB@Position - sRNA 38 -- 86@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 42 -- 48@LB@ |
187 |
0.008608 |
0.1751 |
bsu17960 |
yneK |
-9.96 |
0.317804 |
143 -- 172 |
155 -- 184 |
Evidence 4: Homologs of previously reported genes of unknown function |
|
_____________142___________173\n_____________|_____________|\n5'-AGU...AAUCU________AU___AUAUG...UAA-3'\n______________CUCUUCGU__ACA\n______________||||||:|__|||\n______________GAGAAGUA__UGU\n3'-AUU...AAAAU________GU___CCUGU...CAA-5'\n_____________|_____________|\n_____________185___________154\n |
161 -- 167 |
160 -- 166 |
-12.096 kcal/mol |
1.39305 kcal/mol |
1.41024 kcal/mol |
142 173@LB@ | |@LB@5'-AGU...AAUCU AU AUAUG...UAA-3'@LB@ CUCUUCGU ACA@LB@ ||||||:| |||@LB@ GAGAAGUA UGU@LB@3'-AUU...AAAAU GU CCUGU...CAA-5'@LB@ | |@LB@ 185 154@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -12.096 kcal/mol@LB@Unfolding Energy - mRNA 1.39305 kcal/mol@LB@Unfolding Energy - sRNA 1.41024 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 155 -- 184@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 160 -- 166@LB@ |
63 |
0.001974 |
0.1214 |
bsu34640 |
yvdD |
-9.92 |
0.323853 |
41 -- 65 |
33 -- 60 |
LOG family protein YvdD |
|
_____________40___________________________66\n_____________|____________________________|\n5'-GAC...GUAAA______UCAUCCAUUUUUCUG_______CAGCU...GAA-3'\n______________ACUCUU_______________CAUCAGC\n______________||||||_______________|||||:|\n______________UGAGAA_______________GUAGUUG\n3'-AUU...AAAAA____________________________UCCUG...CAA-5'\n_____________|____________________________|\n_____________61___________________________32\n |
69 -- 75 |
156 -- 162 |
-11.7297 kcal/mol |
2.56294 kcal/mol |
1.40592 kcal/mol |
40 66@LB@ | |@LB@5'-GAC...GUAAA UCAUCCAUUUUUCUG CAGCU...GAA-3'@LB@ ACUCUU CAUCAGC@LB@ |||||| |||||:|@LB@ UGAGAA GUAGUUG@LB@3'-AUU...AAAAA UCCUG...CAA-5'@LB@ | |@LB@ 61 32@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -11.7297 kcal/mol@LB@Unfolding Energy - mRNA 2.56294 kcal/mol@LB@Unfolding Energy - sRNA 1.40592 kcal/mol@LB@@LB@Position - mRNA 41 -- 65@LB@Position - sRNA 33 -- 60@LB@Position Seed - mRNA 69 -- 75@LB@Position Seed - sRNA 156 -- 162@LB@ |
99 |
0.004027 |
0.1561 |
bsu13870 |
ykvZ |
-9.91 |
0.324242 |
1 -- 15 |
1 -- 17 |
LacI family transcriptional regulator |
|
______________1________________16\n______________|________________|\n___________5'-__________A______UUUGG...GAA-3'\n______________GUUUAAUUUC___UGUU\n______________|:||||||||___||||\n______________CGAAUUAAAG___ACAA\n3'-AUU...UUUUG__________AAA____-5'\n_____________|________________|\n_____________18_______________1\n |
4 -- 10 |
8 -- 14 |
-10.8546 kcal/mol |
0.387335 kcal/mol |
1.29438 kcal/mol |
1 16@LB@ | |@LB@ 5'- A UUUGG...GAA-3'@LB@ GUUUAAUUUC UGUU@LB@ |:|||||||| ||||@LB@ CGAAUUAAAG ACAA@LB@3'-AUU...UUUUG AAA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -10.8546 kcal/mol@LB@Unfolding Energy - mRNA 0.387335 kcal/mol@LB@Unfolding Energy - sRNA 1.29438 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 8 -- 14@LB@ |
50 |
0.001627 |
0.1212 |
bsu38130 |
ywcE |
-9.91 |
0.324646 |
1 -- 15 |
39 -- 56 |
spore morphogenesis and germination protein YwcE |
|
_____________0_______________________________________________________________16\n_____________|_______________________________________________________________|\n5'-GCC...AAAAA_____ACA______________A__A___A______U____________UU____U_______AUCAC...CAA-3'\n______________CAAUC_____AAACAG____AC_CA_CUC__GUUCC_CUAUUUC____A__UUUG_AAACGUU\n______________|||||_____|||||:____||_||_|||__:||||_|:|||||____|__||||_|||||:|\n______________GUUAG_____UUUGUU____UG_GU_GAG__UAAGG_GGUAAAG____U__AAAC_UUUGCGA\n3'-AUU...GCAAC_____AACCG______AGCA__G__A___AA_____________AAAC_UU____U_______AUUAA...CAA-5'\n_____________|_______________________________________________________________|\n_____________57______________________________________________________________38\n |
170 -- 176 |
15 -- 21 |
-29.8413 kcal/mol |
5.55001 kcal/mol |
15.9749 kcal/mol |
0 16@LB@ | |@LB@5'-GCC...AAAAA ACA A A A U UU U AUCAC...CAA-3'@LB@ CAAUC AAACAG AC CA CUC GUUCC CUAUUUC A UUUG AAACGUU@LB@ ||||| |||||: || || ||| :|||| |:||||| | |||| |||||:|@LB@ GUUAG UUUGUU UG GU GAG UAAGG GGUAAAG U AAAC UUUGCGA@LB@3'-AUU...GCAAC AACCG AGCA G A AA AAAC UU U AUUAA...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -29.8413 kcal/mol@LB@Unfolding Energy - mRNA 5.55001 kcal/mol@LB@Unfolding Energy - sRNA 15.9749 kcal/mol@LB@@LB@Position - mRNA 1 -- 15@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 15 -- 21@LB@ |
146 |
0.00677 |
0.1741 |
bsu29690 |
acuA |
-9.85 |
0.331997 |
126 -- 137 |
14 -- 25 |
acetoin utilization protein AcuA |
|
_____________125____________138\n_____________|______________|\n5'-UAU...AUUCA______________UUUUA...AUG-3'\n______________UAUUCUUC_UCAAU\n______________||:|||||_||||:\n______________AUGAGAAG_AGUUG\n3'-AUU...AAAAA________U_____UCCUG...CAA-5'\n_____________|______________|\n_____________26_____________13\n |
95 -- 101 |
162 -- 168 |
-12.3213 kcal/mol |
1.49895 kcal/mol |
1.40683 kcal/mol |
125 138@LB@ | |@LB@5'-UAU...AUUCA UUUUA...AUG-3'@LB@ UAUUCUUC UCAAU@LB@ ||:||||| ||||:@LB@ AUGAGAAG AGUUG@LB@3'-AUU...AAAAA U UCCUG...CAA-5'@LB@ | |@LB@ 26 13@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -12.3213 kcal/mol@LB@Unfolding Energy - mRNA 1.49895 kcal/mol@LB@Unfolding Energy - sRNA 1.40683 kcal/mol@LB@@LB@Position - mRNA 126 -- 137@LB@Position - sRNA 14 -- 25@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 162 -- 168@LB@ |
193 |
0.008782 |
0.1751 |
bsu13160 |
ohrB |
-9.78 |
0.341127 |
32 -- 61 |
100 -- 129 |
organic hydroperoxide resistance protein OhrB |
|
_____________31_________62\n_____________|__________|\n5'-CAU...GGACG__________AUUAC...AUG-3'\n______________AGCAGGACAU\n______________|:||||||||\n______________UUGUCCUGUA\n3'-AUU...AGUAG__________ACUGU...CAA-5'\n_____________|__________|\n_____________130________99\n |
245 -- 251 |
149 -- 155 |
-15.2334 kcal/mol |
1.87143 kcal/mol |
5.55277 kcal/mol |
31 62@LB@ | |@LB@5'-CAU...GGACG AUUAC...AUG-3'@LB@ AGCAGGACAU@LB@ |:||||||||@LB@ UUGUCCUGUA@LB@3'-AUU...AGUAG ACUGU...CAA-5'@LB@ | |@LB@ 130 99@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -15.2334 kcal/mol@LB@Unfolding Energy - mRNA 1.87143 kcal/mol@LB@Unfolding Energy - sRNA 5.55277 kcal/mol@LB@@LB@Position - mRNA 32 -- 61@LB@Position - sRNA 100 -- 129@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 149 -- 155@LB@ |
88 |
0.003231 |
0.1423 |
bsu34620 |
mdxD |
-9.76 |
0.344052 |
128 -- 173 |
81 -- 130 |
glucan 1 4-alpha-maltohexaosidase |
|
_____________127____________174\n_____________|______________|\n5'-GUU...AUGCA__GA_______C__GCCAU...GUG-3'\n______________GC__UUCAUCA_CA\n______________:|__|||||||_||\n______________UG__AAGUAGU_GU\n3'-AUU...AAAAA__AG_______U__CCUGU...CAA-5'\n_____________|______________|\n_____________131____________80\n |
220 -- 226 |
158 -- 164 |
-10.4913 kcal/mol |
1.73429 kcal/mol |
1.41528 kcal/mol |
127 174@LB@ | |@LB@5'-GUU...AUGCA GA C GCCAU...GUG-3'@LB@ GC UUCAUCA CA@LB@ :| ||||||| ||@LB@ UG AAGUAGU GU@LB@3'-AUU...AAAAA AG U CCUGU...CAA-5'@LB@ | |@LB@ 131 80@LB@@LB@@LB@Energy -9.76 kcal/mol@LB@Hybridization Energy -10.4913 kcal/mol@LB@Unfolding Energy - mRNA 1.73429 kcal/mol@LB@Unfolding Energy - sRNA 1.41528 kcal/mol@LB@@LB@Position - mRNA 128 -- 173@LB@Position - sRNA 81 -- 130@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 158 -- 164@LB@ |