184 |
0.01824 |
0.3104 |
b2055 |
wcaE |
-6.17 |
0.461247 |
221 -- 230 |
4 -- 12 |
putative glycosyl transferase |
|
_____________220________231\n_____________|__________|\n5'-ACU...AUCAC__U_______CGUAA...GCU-3'\n______________UG_CGCGUUU\n______________||_|||||:|\n______________AC_GCGCAGA\n3'-UUU...UGUUU__________AAG-5'\n_____________|__________|\n_____________13_________3\n |
224 -- 230 |
4 -- 10 |
-10.1102 kcal/mol |
2.78254 kcal/mol |
1.16019 kcal/mol |
220 231@LB@ | |@LB@5'-ACU...AUCAC U CGUAA...GCU-3'@LB@ UG CGCGUUU@LB@ || |||||:|@LB@ AC GCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -6.17 kcal/mol@LB@Hybridization Energy -10.1102 kcal/mol@LB@Unfolding Energy - mRNA 2.78254 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 221 -- 230@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 4 -- 10@LB@ |
96 |
0.009671 |
0.3104 |
b0941 |
elfG |
-12.70 |
0.041082 |
222 -- 232 |
5 -- 15 |
putative fimbrial-like adhesin protein |
b3145 b0533 |
_____________221_________233\n_____________|___________|\n5'-UUU...GAGAA___________AUUAC...GGC-3'\n______________AAAUGCGUGUC\n______________|||||||:|||\n______________UUUACGCGCAG\n3'-UUU...UAUUG___________AAAG-5'\n_____________|___________|\n_____________16__________4\n |
226 -- 232 |
5 -- 11 |
-17.0283 kcal/mol |
3.13128 kcal/mol |
1.19708 kcal/mol |
221 233@LB@ | |@LB@5'-UUU...GAGAA AUUAC...GGC-3'@LB@ AAAUGCGUGUC@LB@ |||||||:|||@LB@ UUUACGCGCAG@LB@3'-UUU...UAUUG AAAG-5'@LB@ | |@LB@ 16 4@LB@@LB@@LB@Energy -12.70 kcal/mol@LB@Hybridization Energy -17.0283 kcal/mol@LB@Unfolding Energy - mRNA 3.13128 kcal/mol@LB@Unfolding Energy - sRNA 1.19708 kcal/mol@LB@@LB@Position - mRNA 222 -- 232@LB@Position - sRNA 5 -- 15@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 5 -- 11@LB@ |
187 |
0.01837 |
0.3104 |
b2151 |
galS |
-10.59 |
0.096282 |
222 -- 228 |
5 -- 11 |
galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
|
_____________221_____229\n_____________|_______|\n5'-UCU...AUGUA_______AGGCU...GUG-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
222 -- 228 |
5 -- 11 |
-14.6299 kcal/mol |
2.93004 kcal/mol |
1.11145 kcal/mol |
221 229@LB@ | |@LB@5'-UCU...AUGUA AGGCU...GUG-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -14.6299 kcal/mol@LB@Unfolding Energy - mRNA 2.93004 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 222 -- 228@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 5 -- 11@LB@ |
40 |
0.002726 |
0.2279 |
b1799 |
dmlR |
-13.48 |
0.029707 |
223 -- 239 |
2 -- 20 |
transcriptional activator of dmlA |
b3060 |
_____________222_________________240\n_____________|___________________|\n5'-CGC...GCUGA_____U_____________AUGCU...CGG-3'\n______________AUGAU___UGCGCGUCUUU\n______________||:|:___|||||||||||\n______________UAUUG___ACGCGCAGAAA\n3'-UUU...ACUAC_____UUU___________G-5'\n_____________|___________________|\n_____________21__________________1\n |
233 -- 239 |
2 -- 8 |
-19.9945 kcal/mol |
5.2543 kcal/mol |
1.25604 kcal/mol |
222 240@LB@ | |@LB@5'-CGC...GCUGA U AUGCU...CGG-3'@LB@ AUGAU UGCGCGUCUUU@LB@ ||:|: |||||||||||@LB@ UAUUG ACGCGCAGAAA@LB@3'-UUU...ACUAC UUU G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -13.48 kcal/mol@LB@Hybridization Energy -19.9945 kcal/mol@LB@Unfolding Energy - mRNA 5.2543 kcal/mol@LB@Unfolding Energy - sRNA 1.25604 kcal/mol@LB@@LB@Position - mRNA 223 -- 239@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 2 -- 8@LB@ |
120 |
0.01222 |
0.3104 |
b0916 |
ycaQ |
-9.32 |
0.156865 |
225 -- 243 |
1 -- 17 |
DUF1006 family protein with C-terminal wHTH domain |
|
_____________224_________________244\n_____________|___________________|\n5'-UGG...CCCUU__U_________AAUC___ACCUU...AUA-3'\n______________GC_GAUGCGCGU____UUC\n______________:|_:||||||||____|||\n______________UG_UUACGCGCA____AAG\n3'-UUU...ACUAU__U_________GA_____-5'\n_____________|__________________|\n_____________18_________________1\n |
230 -- 236 |
6 -- 12 |
-16.5738 kcal/mol |
6.00902 kcal/mol |
1.23994 kcal/mol |
224 244@LB@ | |@LB@5'-UGG...CCCUU U AAUC ACCUU...AUA-3'@LB@ GC GAUGCGCGU UUC@LB@ :| :|||||||| |||@LB@ UG UUACGCGCA AAG@LB@3'-UUU...ACUAU U GA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -16.5738 kcal/mol@LB@Unfolding Energy - mRNA 6.00902 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 225 -- 243@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 6 -- 12@LB@ |
121 |
0.01226 |
0.3104 |
b3209 |
elbB |
-12.57 |
0.043302 |
225 -- 240 |
4 -- 18 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________224______________241\n_____________|________________|\n5'-GCG...UUCUG__________G_____AUGAC...GUG-3'\n______________AGCGGAUGCG_CGUCU\n______________|:|::|||||_|||||\n______________UUGUUUACGC_GCAGA\n3'-UUU...UACUA________________AAG-5'\n_____________|________________|\n_____________19_______________3\n |
228 -- 234 |
9 -- 15 |
-20.315 kcal/mol |
6.5132 kcal/mol |
1.22995 kcal/mol |
224 241@LB@ | |@LB@5'-GCG...UUCUG G AUGAC...GUG-3'@LB@ AGCGGAUGCG CGUCU@LB@ |:|::||||| |||||@LB@ UUGUUUACGC GCAGA@LB@3'-UUU...UACUA AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -20.315 kcal/mol@LB@Unfolding Energy - mRNA 6.5132 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 9 -- 15@LB@ |
3 |
3.559e-05 |
0.03436 |
b0168 |
map |
-14.62 |
0.018437 |
228 -- 248 |
5 -- 21 |
methionine aminopeptidase |
|
_____________227___________________249\n_____________|_____________________|\n5'-CUU...CAGAA____UCGAAA___________GCUGG...AAC-3'\n______________GAUA______AAAUGCGCGUC\n______________||||______|||||||||||\n______________CUAU______UUUACGCGCAG\n3'-UUU...UACUA____UG_______________AAAG-5'\n_____________|_____________________|\n_____________22____________________4\n |
242 -- 248 |
5 -- 11 |
-19.3611 kcal/mol |
3.48659 kcal/mol |
1.24955 kcal/mol |
227 249@LB@ | |@LB@5'-CUU...CAGAA UCGAAA GCUGG...AAC-3'@LB@ GAUA AAAUGCGCGUC@LB@ |||| |||||||||||@LB@ CUAU UUUACGCGCAG@LB@3'-UUU...UACUA UG AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -14.62 kcal/mol@LB@Hybridization Energy -19.3611 kcal/mol@LB@Unfolding Energy - mRNA 3.48659 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 228 -- 248@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 5 -- 11@LB@ |
58 |
0.00518 |
0.3024 |
b4068 |
yjcH |
-12.19 |
0.050580 |
228 -- 240 |
8 -- 21 |
DUF485 family inner membrane protein |
|
_____________227____________241\n_____________|______________|\n5'-ACC...GGAUA__A___________AUUUC...UGC-3'\n______________GA_GAC_AAUGCGC\n______________||_:||_|||||||\n______________CU_UUG_UUACGCG\n3'-UUU...UACUA__A___U_______CAGAAAG-5'\n_____________|______________|\n_____________22_____________7\n |
234 -- 240 |
8 -- 14 |
-14.481 kcal/mol |
1.05266 kcal/mol |
1.23638 kcal/mol |
227 241@LB@ | |@LB@5'-ACC...GGAUA A AUUUC...UGC-3'@LB@ GA GAC AAUGCGC@LB@ || :|| |||||||@LB@ CU UUG UUACGCG@LB@3'-UUU...UACUA A U CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -12.19 kcal/mol@LB@Hybridization Energy -14.481 kcal/mol@LB@Unfolding Energy - mRNA 1.05266 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 228 -- 240@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 8 -- 14@LB@ |
162 |
0.01506 |
0.3104 |
b0871 |
poxB |
-6.02 |
0.481603 |
228 -- 255 |
23 -- 53 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________227_______________________________256\n_____________|_________________________________|\n5'-CCG...AUAUC_____________________CGG_________AACGC...GUG-3'\n______________GCCAAAA___CA_CUC_GAAU___CAGGGGUGA\n______________|||||||___||_|||_||||___|||||:|||\n______________CGGUUUU___GU_GAG_CUUA___GUCCCUACU\n3'-UUU...CUCAC_______AAA__A___A____A___________ACUAU...AAG-5'\n_____________|_________________________________|\n_____________54________________________________22\n |
249 -- 255 |
23 -- 29 |
-28.0165 kcal/mol |
6.84512 kcal/mol |
15.1535 kcal/mol |
227 256@LB@ | |@LB@5'-CCG...AUAUC CGG AACGC...GUG-3'@LB@ GCCAAAA CA CUC GAAU CAGGGGUGA@LB@ ||||||| || ||| |||| |||||:|||@LB@ CGGUUUU GU GAG CUUA GUCCCUACU@LB@3'-UUU...CUCAC AAA A A A ACUAU...AAG-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -28.0165 kcal/mol@LB@Unfolding Energy - mRNA 6.84512 kcal/mol@LB@Unfolding Energy - sRNA 15.1535 kcal/mol@LB@@LB@Position - mRNA 228 -- 255@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 23 -- 29@LB@ |
130 |
0.01263 |
0.3104 |
b1952 |
dsrB |
-7.17 |
0.338083 |
230 -- 240 |
7 -- 18 |
uncharacterized protein |
|
_____________229__________241\n_____________|____________|\n5'-CGU...GUCAA____________GUCCG...ACC-3'\n______________AACGGAUG_GCG\n______________|||::|||_|||\n______________UUGUUUAC_CGC\n3'-UUU...UACUA________G___AGAAAG-5'\n_____________|____________|\n_____________19___________6\n |
231 -- 237 |
11 -- 17 |
-11.9456 kcal/mol |
3.57064 kcal/mol |
1.20891 kcal/mol |
229 241@LB@ | |@LB@5'-CGU...GUCAA GUCCG...ACC-3'@LB@ AACGGAUG GCG@LB@ |||::||| |||@LB@ UUGUUUAC CGC@LB@3'-UUU...UACUA G AGAAAG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -7.17 kcal/mol@LB@Hybridization Energy -11.9456 kcal/mol@LB@Unfolding Energy - mRNA 3.57064 kcal/mol@LB@Unfolding Energy - sRNA 1.20891 kcal/mol@LB@@LB@Position - mRNA 230 -- 240@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 11 -- 17@LB@ |