36 |
0.001384 |
0.121 |
b2573 |
rpoE |
-5.96 |
0.197133 |
163 -- 178 |
25 -- 41 |
RNA polymerase sigma E factor |
|
_____________162_______________179\n_____________|_________________|\n5'-ACA...UCGAU_____GU__________GUUUG...UGG-3'\n______________AGCGC___GGAAAUUUG\n______________|||:|___::|||||:|\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
172 -- 178 |
25 -- 31 |
-12.5895 kcal/mol |
4.97735 kcal/mol |
1.64839 kcal/mol |
162 179@LB@ | |@LB@5'-ACA...UCGAU GU GUUUG...UGG-3'@LB@ AGCGC GGAAAUUUG@LB@ |||:| ::|||||:|@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -5.96 kcal/mol@LB@Hybridization Energy -12.5895 kcal/mol@LB@Unfolding Energy - mRNA 4.97735 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 163 -- 178@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 25 -- 31@LB@ |
175 |
0.01993 |
0.3669 |
b0183 |
rnhB |
-5.94 |
0.199165 |
195 -- 215 |
23 -- 41 |
ribonuclease HII degrades RNA of DNA-RNA hybrids |
|
_____________194___________________216\n_____________|_____________________|\n5'-AAU...GAGUU_____AA___UC_________UAUCC...UCC-3'\n______________AGCAC__UGA__GAAUUUGUU\n______________|||||__|:|__:||||:|||\n______________UCGUG__AUU__UUUAAGCAA\n3'-UUU...GUUCU_____A____U__________UGUGG...CAA-5'\n_____________|_____________________|\n_____________42____________________22\n |
209 -- 215 |
23 -- 29 |
-11.3649 kcal/mol |
3.77136 kcal/mol |
1.64896 kcal/mol |
194 216@LB@ | |@LB@5'-AAU...GAGUU AA UC UAUCC...UCC-3'@LB@ AGCAC UGA GAAUUUGUU@LB@ ||||| |:| :||||:|||@LB@ UCGUG AUU UUUAAGCAA@LB@3'-UUU...GUUCU A U UGUGG...CAA-5'@LB@ | |@LB@ 42 22@LB@@LB@@LB@Energy -5.94 kcal/mol@LB@Hybridization Energy -11.3649 kcal/mol@LB@Unfolding Energy - mRNA 3.77136 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 195 -- 215@LB@Position - sRNA 23 -- 41@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 23 -- 29@LB@ |
128 |
0.01225 |
0.3033 |
b3299 |
rpmJ |
-5.94 |
0.199813 |
193 -- 212 |
24 -- 42 |
50S ribosomal subunit protein L36 |
|
_____________192__________________213\n_____________|____________________|\n5'-GGA...ACGGA_____AAAAU__________GCUUC...AUA-3'\n______________GAGUA_____GAAAGUUCGU\n______________:||:|_____:|||:|||||\n______________UUCGU_____UUUUUAAGCA\n3'-UUU...CGUUC_____GAAU___________AUGUG...CAA-5'\n_____________|____________________|\n_____________43___________________23\n |
206 -- 212 |
24 -- 30 |
-12.4383 kcal/mol |
4.85088 kcal/mol |
1.64896 kcal/mol |
192 213@LB@ | |@LB@5'-GGA...ACGGA AAAAU GCUUC...AUA-3'@LB@ GAGUA GAAAGUUCGU@LB@ :||:| :|||:|||||@LB@ UUCGU UUUUUAAGCA@LB@3'-UUU...CGUUC GAAU AUGUG...CAA-5'@LB@ | |@LB@ 43 23@LB@@LB@@LB@Energy -5.94 kcal/mol@LB@Hybridization Energy -12.4383 kcal/mol@LB@Unfolding Energy - mRNA 4.85088 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 193 -- 212@LB@Position - sRNA 24 -- 42@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 24 -- 30@LB@ |
56 |
0.002803 |
0.1597 |
b2514 |
hisS |
-5.93 |
0.201249 |
279 -- 295 |
24 -- 41 |
histidyl tRNA synthetase |
|
_____________278_________________296\n_____________|___________________|\n5'-AUG...UUGAA_____AC____________GCUCG-3'\n______________GGCAC__UGAAAAA__CGU\n______________:||||__|:|||||__|||\n______________UCGUG__AUUUUUU__GCA\n3'-UUU...GUUCU_____A________AA___AUGUG...CAA-5'\n_____________|___________________|\n_____________42__________________23\n |
286 -- 292 |
29 -- 35 |
-10.1195 kcal/mol |
2.54562 kcal/mol |
1.64881 kcal/mol |
278 296@LB@ | |@LB@5'-AUG...UUGAA AC GCUCG-3'@LB@ GGCAC UGAAAAA CGU@LB@ :|||| |:||||| |||@LB@ UCGUG AUUUUUU GCA@LB@3'-UUU...GUUCU A AA AUGUG...CAA-5'@LB@ | |@LB@ 42 23@LB@@LB@@LB@Energy -5.93 kcal/mol@LB@Hybridization Energy -10.1195 kcal/mol@LB@Unfolding Energy - mRNA 2.54562 kcal/mol@LB@Unfolding Energy - sRNA 1.64881 kcal/mol@LB@@LB@Position - mRNA 279 -- 295@LB@Position - sRNA 24 -- 41@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 29 -- 35@LB@ |
186 |
0.02184 |
0.3768 |
b1256 |
ompW |
-5.92 |
0.201836 |
13 -- 38 |
30 -- 57 |
outer membrane protein W |
|
_____________12___________________________39\n_____________|____________________________|\n5'-GAC...UUAAU______GU______A_____________UUGAU...CUG-3'\n______________AUUUGC___AGCGA_AA_UAUUUAAAAA\n______________|:||||___|||:|_||_:|:|||||||\n______________UGAACG___UCGUU_UU_GUGAAUUUUU\n3'-UUU...UACUU______AAU_____C__C__________UAAGC...CAA-5'\n_____________|____________________________|\n_____________58___________________________29\n |
32 -- 38 |
30 -- 36 |
-16.1426 kcal/mol |
3.99952 kcal/mol |
6.22352 kcal/mol |
12 39@LB@ | |@LB@5'-GAC...UUAAU GU A UUGAU...CUG-3'@LB@ AUUUGC AGCGA AA UAUUUAAAAA@LB@ |:|||| |||:| || :|:|||||||@LB@ UGAACG UCGUU UU GUGAAUUUUU@LB@3'-UUU...UACUU AAU C C UAAGC...CAA-5'@LB@ | |@LB@ 58 29@LB@@LB@@LB@Energy -5.92 kcal/mol@LB@Hybridization Energy -16.1426 kcal/mol@LB@Unfolding Energy - mRNA 3.99952 kcal/mol@LB@Unfolding Energy - sRNA 6.22352 kcal/mol@LB@@LB@Position - mRNA 13 -- 38@LB@Position - sRNA 30 -- 57@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 30 -- 36@LB@ |
173 |
0.01972 |
0.3669 |
b3426 |
glpD |
-5.91 |
0.203159 |
207 -- 224 |
3 -- 20 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________206_________________225\n_____________|___________________|\n5'-AAC...UGGAA____A_________U____AUAGG...AGG-3'\n______________ACCA__AGAUCUGA_UGUG\n______________||||__|:||||||_||||\n______________UGGU__UUUAGACU_ACAC\n3'-UUU...CAAUG____CC_____________AA-5'\n_____________|___________________|\n_____________21__________________2\n |
213 -- 219 |
7 -- 13 |
-16.1802 kcal/mol |
2.74973 kcal/mol |
7.52321 kcal/mol |
206 225@LB@ | |@LB@5'-AAC...UGGAA A U AUAGG...AGG-3'@LB@ ACCA AGAUCUGA UGUG@LB@ |||| |:|||||| ||||@LB@ UGGU UUUAGACU ACAC@LB@3'-UUU...CAAUG CC AA-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -5.91 kcal/mol@LB@Hybridization Energy -16.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.74973 kcal/mol@LB@Unfolding Energy - sRNA 7.52321 kcal/mol@LB@@LB@Position - mRNA 207 -- 224@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 7 -- 13@LB@ |
69 |
0.00357 |
0.1645 |
b0571 |
cusR |
-5.90 |
0.203942 |
86 -- 99 |
6 -- 21 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________85_______________100\n_____________|________________|\n5'-AGC...UUACU_______C________UUUCC...GGC-3'\n______________CGCCAGG___UCUGAU\n______________|:|||||___||||||\n______________GUGGUCC___AGACUA\n3'-UUU...GCAAU_______UUU______CACAA-5'\n_____________|________________|\n_____________22_______________5\n |
86 -- 92 |
15 -- 21 |
-18.4182 kcal/mol |
4.95815 kcal/mol |
7.56001 kcal/mol |
85 100@LB@ | |@LB@5'-AGC...UUACU C UUUCC...GGC-3'@LB@ CGCCAGG UCUGAU@LB@ |:||||| ||||||@LB@ GUGGUCC AGACUA@LB@3'-UUU...GCAAU UUU CACAA-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -18.4182 kcal/mol@LB@Unfolding Energy - mRNA 4.95815 kcal/mol@LB@Unfolding Energy - sRNA 7.56001 kcal/mol@LB@@LB@Position - mRNA 86 -- 99@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 15 -- 21@LB@ |
150 |
0.01547 |
0.3321 |
b3736 |
atpF |
-5.86 |
0.208717 |
262 -- 272 |
37 -- 47 |
F0 sector of membrane-bound ATP synthase subunit b |
|
_____________261_________273\n_____________|___________|\n5'-AUU...GUUCU___U_______GUAUG...UCG-3'\n______________GCA_GAAGUAC\n______________|||_||||:||\n______________CGU_CUUCGUG\n3'-UUU...GAAUU___U_______AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
266 -- 272 |
37 -- 43 |
-12.6044 kcal/mol |
1.50868 kcal/mol |
5.23944 kcal/mol |
261 273@LB@ | |@LB@5'-AUU...GUUCU U GUAUG...UCG-3'@LB@ GCA GAAGUAC@LB@ ||| ||||:||@LB@ CGU CUUCGUG@LB@3'-UUU...GAAUU U AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -5.86 kcal/mol@LB@Hybridization Energy -12.6044 kcal/mol@LB@Unfolding Energy - mRNA 1.50868 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 262 -- 272@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 37 -- 43@LB@ |
171 |
0.01957 |
0.3668 |
b2498 |
upp |
-5.84 |
0.210430 |
244 -- 265 |
42 -- 61 |
uracil phosphoribosyltransferase |
|
_____________243____________________266\n_____________|______________________|\n5'-GGC...CAAGC_______GA___G_________UAUCA...CCG-3'\n______________UGGGACU__UGC_UGAGCAAGA\n______________||::|||__|||_|:|||||||\n______________ACUUUGA__ACG_AUUCGUUCU\n3'-UUU...GCCCU____________A_________UCGUG...CAA-5'\n_____________|______________________|\n_____________62_____________________41\n |
259 -- 265 |
42 -- 48 |
-21.1169 kcal/mol |
8.03919 kcal/mol |
7.23689 kcal/mol |
243 266@LB@ | |@LB@5'-GGC...CAAGC GA G UAUCA...CCG-3'@LB@ UGGGACU UGC UGAGCAAGA@LB@ ||::||| ||| |:|||||||@LB@ ACUUUGA ACG AUUCGUUCU@LB@3'-UUU...GCCCU A UCGUG...CAA-5'@LB@ | |@LB@ 62 41@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -21.1169 kcal/mol@LB@Unfolding Energy - mRNA 8.03919 kcal/mol@LB@Unfolding Energy - sRNA 7.23689 kcal/mol@LB@@LB@Position - mRNA 244 -- 265@LB@Position - sRNA 42 -- 61@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 42 -- 48@LB@ |
45 |
0.001912 |
0.1369 |
b0080 |
cra |
-5.81 |
0.213706 |
183 -- 197 |
38 -- 52 |
transcriptional repressor-activator for carbon metabolism |
|
_____________182_____________198\n_____________|_______________|\n5'-GGC...UACAU____C__________AUUGU...AAA-3'\n______________UUUA_GCAAGGGGCA\n______________:|||_|||||::|||\n______________GAAU_CGUUCUUCGU\n3'-UUU...UGAAC____U__________GAAUU...CAA-5'\n_____________|_______________|\n_____________53______________37\n |
191 -- 197 |
38 -- 44 |
-16.0644 kcal/mol |
4.16124 kcal/mol |
6.09169 kcal/mol |
182 198@LB@ | |@LB@5'-GGC...UACAU C AUUGU...AAA-3'@LB@ UUUA GCAAGGGGCA@LB@ :||| |||||::|||@LB@ GAAU CGUUCUUCGU@LB@3'-UUU...UGAAC U GAAUU...CAA-5'@LB@ | |@LB@ 53 37@LB@@LB@@LB@Energy -5.81 kcal/mol@LB@Hybridization Energy -16.0644 kcal/mol@LB@Unfolding Energy - mRNA 4.16124 kcal/mol@LB@Unfolding Energy - sRNA 6.09169 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 38 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 38 -- 44@LB@ |