99 |
0.003254 |
0.1114 |
b2839 |
lysR |
-9.43 |
0.148712 |
276 -- 282 |
1 -- 7 |
transcriptional activator of lysA; autorepressor |
|
_____________275_____283\n_____________|_______|\n5'-GGC...CGGCA_______UACAC...CAA-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
276 -- 282 |
1 -- 7 |
-13.2779 kcal/mol |
1.51062 kcal/mol |
2.34039 kcal/mol |
275 283@LB@ | |@LB@5'-GGC...CGGCA UACAC...CAA-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2779 kcal/mol@LB@Unfolding Energy - mRNA 1.51062 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 276 -- 282@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 1 -- 7@LB@ |
130 |
0.00465 |
0.126 |
b2916 |
argP |
-9.43 |
0.148863 |
238 -- 266 |
47 -- 73 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________237___________________________267\n_____________|_____________________________|\n5'-GGC...ACUGG__________ACG____C_____UU____CGCGC...CAG-3'\n______________AUGCGGUGAU___UGAA_GAGGA__UGAG\n______________||||:||:||___::||_:||||__|:||\n______________UACGUCAUUA___GUUU_UUCCU__AUUC\n3'-UUU...CACGA__________A______U_____UC____UGUUA...ACG-5'\n_____________|_____________________________|\n_____________74____________________________46\n |
240 -- 246 |
65 -- 71 |
-19.9139 kcal/mol |
5.97985 kcal/mol |
4.50495 kcal/mol |
237 267@LB@ | |@LB@5'-GGC...ACUGG ACG C UU CGCGC...CAG-3'@LB@ AUGCGGUGAU UGAA GAGGA UGAG@LB@ ||||:||:|| ::|| :|||| |:||@LB@ UACGUCAUUA GUUU UUCCU AUUC@LB@3'-UUU...CACGA A U UC UGUUA...ACG-5'@LB@ | |@LB@ 74 46@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -19.9139 kcal/mol@LB@Unfolding Energy - mRNA 5.97985 kcal/mol@LB@Unfolding Energy - sRNA 4.50495 kcal/mol@LB@@LB@Position - mRNA 238 -- 266@LB@Position - sRNA 47 -- 73@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 65 -- 71@LB@ |
186 |
0.008102 |
0.1535 |
b1768 |
pncA |
-9.42 |
0.149628 |
191 -- 212 |
21 -- 39 |
nicotinamidase/pyrazinamidase |
|
_____________190____________________213\n_____________|______________________|\n5'-UAA...AUUAA____A_U_________CC____GCCCU...CUA-3'\n______________GGAG_C_GUAAUGCCC__UCGC\n______________||||_|_|:||:||||__||||\n______________CCUC_G_CGUUGCGGG__AGCG\n3'-UUU...UUAUA________________U_____AACUG...ACG-5'\n_____________|______________________|\n_____________40_____________________20\n |
200 -- 206 |
26 -- 32 |
-26.7187 kcal/mol |
5.14291 kcal/mol |
12.1569 kcal/mol |
190 213@LB@ | |@LB@5'-UAA...AUUAA A U CC GCCCU...CUA-3'@LB@ GGAG C GUAAUGCCC UCGC@LB@ |||| | |:||:|||| ||||@LB@ CCUC G CGUUGCGGG AGCG@LB@3'-UUU...UUAUA U AACUG...ACG-5'@LB@ | |@LB@ 40 20@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -26.7187 kcal/mol@LB@Unfolding Energy - mRNA 5.14291 kcal/mol@LB@Unfolding Energy - sRNA 12.1569 kcal/mol@LB@@LB@Position - mRNA 191 -- 212@LB@Position - sRNA 21 -- 39@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 26 -- 32@LB@ |
61 |
0.001027 |
0.05816 |
b0443 |
fadM |
-9.40 |
0.151451 |
193 -- 205 |
69 -- 81 |
long-chain acyl-CoA thioesterase III |
|
_____________192___________206\n_____________|_____________|\n5'-GUU...AGGUU____C________AACAC...AUG-3'\n______________AUUG_GCUAUGCA\n______________||||_||||||||\n______________UAAC_CGAUACGU\n3'-UUU...UUAGU____A________CAUUA...ACG-5'\n_____________|_____________|\n_____________82____________68\n |
199 -- 205 |
69 -- 75 |
-15.9471 kcal/mol |
4.72824 kcal/mol |
1.82028 kcal/mol |
192 206@LB@ | |@LB@5'-GUU...AGGUU C AACAC...AUG-3'@LB@ AUUG GCUAUGCA@LB@ |||| ||||||||@LB@ UAAC CGAUACGU@LB@3'-UUU...UUAGU A CAUUA...ACG-5'@LB@ | |@LB@ 82 68@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -15.9471 kcal/mol@LB@Unfolding Energy - mRNA 4.72824 kcal/mol@LB@Unfolding Energy - sRNA 1.82028 kcal/mol@LB@@LB@Position - mRNA 193 -- 205@LB@Position - sRNA 69 -- 81@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 69 -- 75@LB@ |
39 |
0.0003198 |
0.02889 |
b3960 |
argH |
-9.38 |
0.152930 |
179 -- 221 |
28 -- 64 |
argininosuccinate lyase |
|
_____________178__________________________________________222\n_____________|____________________________________________|\n5'-GCA...UGAAU_______U_____AACAG___UAU____CUU_____________UUUAC...AUA-3'\n______________UUCAAAA_AAGGA_____AGU___GGCA___UGGGGCG_GGCGU\n______________|||||||_|||||_____|||___|:||___|||:|||_::||:\n______________AAGUUUU_UUCCU_____UCA___CUGU___ACCUCGC_UUGCG\n3'-UUU...UCAUU_____________________UU_____UAU_______G_____GGUAG...ACG-5'\n_____________|____________________________________________|\n_____________65___________________________________________27\n |
210 -- 216 |
34 -- 40 |
-30.4591 kcal/mol |
8.02766 kcal/mol |
13.054 kcal/mol |
178 222@LB@ | |@LB@5'-GCA...UGAAU U AACAG UAU CUU UUUAC...AUA-3'@LB@ UUCAAAA AAGGA AGU GGCA UGGGGCG GGCGU@LB@ ||||||| ||||| ||| |:|| |||:||| ::||:@LB@ AAGUUUU UUCCU UCA CUGU ACCUCGC UUGCG@LB@3'-UUU...UCAUU UU UAU G GGUAG...ACG-5'@LB@ | |@LB@ 65 27@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -30.4591 kcal/mol@LB@Unfolding Energy - mRNA 8.02766 kcal/mol@LB@Unfolding Energy - sRNA 13.054 kcal/mol@LB@@LB@Position - mRNA 179 -- 221@LB@Position - sRNA 28 -- 64@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 34 -- 40@LB@ |
174 |
0.007207 |
0.145 |
b1034 |
ycdX |
-9.36 |
0.154134 |
94 -- 120 |
35 -- 63 |
alkaline phosphatase |
|
_____________93_____________________________121\n_____________|______________________________|\n5'-GGC...CCAGC__________________G___C__C____AAGUC...AAC-3'\n______________UCGAAAAAGGG___GAGA_GGU_UG_GGGC\n______________||:|||||||:___:|||_::|_||_|:||\n______________AGUUUUUUCCU___UUCU_UUA_AC_CUCG\n3'-UUU...CAUUA___________UCA____G___U_______CGUUG...ACG-5'\n_____________|______________________________|\n_____________64_____________________________34\n |
98 -- 104 |
53 -- 59 |
-21.9855 kcal/mol |
6.52956 kcal/mol |
6.08557 kcal/mol |
93 121@LB@ | |@LB@5'-GGC...CCAGC G C C AAGUC...AAC-3'@LB@ UCGAAAAAGGG GAGA GGU UG GGGC@LB@ ||:|||||||: :||| ::| || |:||@LB@ AGUUUUUUCCU UUCU UUA AC CUCG@LB@3'-UUU...CAUUA UCA G U CGUUG...ACG-5'@LB@ | |@LB@ 64 34@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -21.9855 kcal/mol@LB@Unfolding Energy - mRNA 6.52956 kcal/mol@LB@Unfolding Energy - sRNA 6.08557 kcal/mol@LB@@LB@Position - mRNA 94 -- 120@LB@Position - sRNA 35 -- 63@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 53 -- 59@LB@ |
128 |
0.004569 |
0.1258 |
b3033 |
yqiB |
-9.35 |
0.155553 |
90 -- 130 |
43 -- 87 |
DUF1249 protein YqiB |
|
_____________89_____________________________________________131\n_____________|______________________________________________|\n5'-UGG...GCCGG_____________AUAC______GUA__________AAAUC_____CGCAG...GCG-3'\n______________GAA_CAG____GC____CAGUGG___GAAGAGGGGA_____GACAA\n______________|||_||:____||____||||::___:||:|:||:|_____|||||\n______________CUU_GUU____CG____GUCAUU___UUUUUUCCUU_____CUGUU\n3'-UUU...GCAUG___A___AACA__AUAC______AAG__________CAUU______AUACC...ACG-5'\n_____________|______________________________________________|\n_____________88_____________________________________________42\n |
114 -- 120 |
52 -- 58 |
-22.1335 kcal/mol |
7.07839 kcal/mol |
5.71172 kcal/mol |
89 131@LB@ | |@LB@5'-UGG...GCCGG AUAC GUA AAAUC CGCAG...GCG-3'@LB@ GAA CAG GC CAGUGG GAAGAGGGGA GACAA@LB@ ||| ||: || ||||:: :||:|:||:| |||||@LB@ CUU GUU CG GUCAUU UUUUUUCCUU CUGUU@LB@3'-UUU...GCAUG A AACA AUAC AAG CAUU AUACC...ACG-5'@LB@ | |@LB@ 88 42@LB@@LB@@LB@Energy -9.35 kcal/mol@LB@Hybridization Energy -22.1335 kcal/mol@LB@Unfolding Energy - mRNA 7.07839 kcal/mol@LB@Unfolding Energy - sRNA 5.71172 kcal/mol@LB@@LB@Position - mRNA 90 -- 130@LB@Position - sRNA 43 -- 87@LB@Position Seed - mRNA 114 -- 120@LB@Position Seed - sRNA 52 -- 58@LB@ |
157 |
0.006139 |
0.1377 |
b2347 |
yfdC |
-9.29 |
0.160067 |
171 -- 205 |
37 -- 76 |
putative inner membrane protein |
|
_____________170________________________________________206\n_____________|__________________________________________|\n5'-GCA...CUUUA_____AC___C_______________________C_______CAACG...UCC-3'\n______________GCUAU__GUG_UAAUUCAAGA___GAAG__AGAC___AUGGA\n______________|||||__|::_||||||||:|___||||__||||___|||||\n______________CGAUA__CGU_AUUAAGUUUU___CUUC__UCUG___UACCU\n3'-UUU...UAACA__________C__________UUC____AU____UUA_____CGCGU...ACG-5'\n_____________|__________________________________________|\n_____________77_________________________________________36\n |
185 -- 191 |
58 -- 64 |
-24.5838 kcal/mol |
7.63937 kcal/mol |
7.64142 kcal/mol |
170 206@LB@ | |@LB@5'-GCA...CUUUA AC C C CAACG...UCC-3'@LB@ GCUAU GUG UAAUUCAAGA GAAG AGAC AUGGA@LB@ ||||| |:: ||||||||:| |||| |||| |||||@LB@ CGAUA CGU AUUAAGUUUU CUUC UCUG UACCU@LB@3'-UUU...UAACA C UUC AU UUA CGCGU...ACG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -9.29 kcal/mol@LB@Hybridization Energy -24.5838 kcal/mol@LB@Unfolding Energy - mRNA 7.63937 kcal/mol@LB@Unfolding Energy - sRNA 7.64142 kcal/mol@LB@@LB@Position - mRNA 171 -- 205@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 58 -- 64@LB@ |
98 |
0.003129 |
0.1114 |
b0357 |
frmR |
-9.19 |
0.168108 |
184 -- 207 |
25 -- 48 |
regulator protein that represses frmRAB operon |
|
_____________183______________________208\n_____________|________________________|\n5'-CUG...CAUGC________A__U___AA_______GUACU...CCG-3'\n______________AGAUGAUG_GG_GCG__AUGCCCA\n______________|||::||:_||_|||__|:|||||\n______________UCUGUUAU_CC_CGC__UGCGGGU\n3'-UUU...UUCAU________A__U___GU_______AGCGA...ACG-5'\n_____________|________________________|\n_____________49_______________________24\n |
201 -- 207 |
25 -- 31 |
-27.7971 kcal/mol |
6.33291 kcal/mol |
12.271 kcal/mol |
183 208@LB@ | |@LB@5'-CUG...CAUGC A U AA GUACU...CCG-3'@LB@ AGAUGAUG GG GCG AUGCCCA@LB@ |||::||: || ||| |:|||||@LB@ UCUGUUAU CC CGC UGCGGGU@LB@3'-UUU...UUCAU A U GU AGCGA...ACG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -9.19 kcal/mol@LB@Hybridization Energy -27.7971 kcal/mol@LB@Unfolding Energy - mRNA 6.33291 kcal/mol@LB@Unfolding Energy - sRNA 12.271 kcal/mol@LB@@LB@Position - mRNA 184 -- 207@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 25 -- 31@LB@ |
156 |
0.006066 |
0.137 |
b0005 |
yaaX |
-9.16 |
0.170742 |
96 -- 118 |
53 -- 73 |
DUF2502 family putative periplasmic protein |
b2390 |
_____________95______________________119\n_____________|_______________________|\n5'-UCU...AAUAA_________C_______UU____UUGCG...AAU-3'\n______________AUGCGGUAA_UUAGAGA__AGGA\n______________||||:||||_|:|:|:|__||||\n______________UACGUCAUU_AGUUUUU__UCCU\n3'-UUU...CACGA_________A_____________UCAUU...ACG-5'\n_____________|_______________________|\n_____________74______________________52\n |
98 -- 104 |
65 -- 71 |
-18.9701 kcal/mol |
6.27714 kcal/mol |
3.52907 kcal/mol |
95 119@LB@ | |@LB@5'-UCU...AAUAA C UU UUGCG...AAU-3'@LB@ AUGCGGUAA UUAGAGA AGGA@LB@ ||||:|||| |:|:|:| ||||@LB@ UACGUCAUU AGUUUUU UCCU@LB@3'-UUU...CACGA A UCAUU...ACG-5'@LB@ | |@LB@ 74 52@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -18.9701 kcal/mol@LB@Unfolding Energy - mRNA 6.27714 kcal/mol@LB@Unfolding Energy - sRNA 3.52907 kcal/mol@LB@@LB@Position - mRNA 96 -- 118@LB@Position - sRNA 53 -- 73@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 65 -- 71@LB@ |