151 |
0.01691 |
0.3749 |
b2442 |
intZ |
-12.49 |
0.088679 |
278 -- 291 |
17 -- 31 |
CPZ-55 prophage; putative phage integrase |
b2349 |
_____________277_________________292\n_____________|___________________|\n5'-ACA...AAACU____________C_G____CGGGG...UGC-3'\n______________CACCGAU__UCA_U_ACGC\n______________||||:||__|||_|_||:|\n______________GUGGUUA__AGU_A_UGUG\n3'-UUU...AAAAU_______UG___C_G____UACUA...UAG-5'\n_____________|___________________|\n_____________32__________________16\n |
269 -- 275 |
180 -- 186 |
-14.1411 kcal/mol |
1.5591 kcal/mol |
4.88042 kcal/mol |
277 292@LB@ | |@LB@5'-ACA...AAACU C G CGGGG...UGC-3'@LB@ CACCGAU UCA U ACGC@LB@ ||||:|| ||| | ||:|@LB@ GUGGUUA AGU A UGUG@LB@3'-UUU...AAAAU UG C G UACUA...UAG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -12.49 kcal/mol@LB@Hybridization Energy -14.1411 kcal/mol@LB@Unfolding Energy - mRNA 1.5591 kcal/mol@LB@Unfolding Energy - sRNA 4.88042 kcal/mol@LB@@LB@Position - mRNA 278 -- 291@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 180 -- 186@LB@ |
152 |
0.0171 |
0.3749 |
b3605 |
lldD |
-10.23 |
0.248595 |
212 -- 221 |
68 -- 77 |
L-lactate dehydrogenase FMN-linked |
|
_____________211_______222\n_____________|_________|\n5'-UUU...GAAAA_________UAUUU...ACA-3'\n______________ACGCAUGAU\n______________||:||||||\n______________UGUGUACUA\n3'-UUU...GUCAG_________CGUCC...UAG-5'\n_____________|_________|\n_____________78________67\n |
199 -- 205 |
163 -- 169 |
-11.1438 kcal/mol |
1.00002 kcal/mol |
4.14962 kcal/mol |
211 222@LB@ | |@LB@5'-UUU...GAAAA UAUUU...ACA-3'@LB@ ACGCAUGAU@LB@ ||:||||||@LB@ UGUGUACUA@LB@3'-UUU...GUCAG CGUCC...UAG-5'@LB@ | |@LB@ 78 67@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -11.1438 kcal/mol@LB@Unfolding Energy - mRNA 1.00002 kcal/mol@LB@Unfolding Energy - sRNA 4.14962 kcal/mol@LB@@LB@Position - mRNA 212 -- 221@LB@Position - sRNA 68 -- 77@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
153 |
0.01719 |
0.3749 |
b2997 |
hybO |
-10.59 |
0.212773 |
44 -- 57 |
176 -- 189 |
hydrogenase 2 small subunit |
|
_____________43_________________58\n_____________|__________________|\n5'-CUC...AUUAA______________CU__CCUUC...GCA-3'\n______________UUACACUAAUGCUU__UC\n______________||||||:|||:||:__||\n______________AAUGUGGUUAUGAG__AG\n3'-UUU...ACUAA______________UC__UGUGU...UAG-5'\n_____________|__________________|\n_____________190________________175\n |
51 -- 57 |
176 -- 182 |
-17.3647 kcal/mol |
0.828093 kcal/mol |
4.66778 kcal/mol |
43 58@LB@ | |@LB@5'-CUC...AUUAA CU CCUUC...GCA-3'@LB@ UUACACUAAUGCUU UC@LB@ ||||||:|||:||: ||@LB@ AAUGUGGUUAUGAG AG@LB@3'-UUU...ACUAA UC UGUGU...UAG-5'@LB@ | |@LB@ 190 175@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -17.3647 kcal/mol@LB@Unfolding Energy - mRNA 0.828093 kcal/mol@LB@Unfolding Energy - sRNA 4.66778 kcal/mol@LB@@LB@Position - mRNA 44 -- 57@LB@Position - sRNA 176 -- 189@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 176 -- 182@LB@ |
154 |
0.01719 |
0.3749 |
b3726 |
pstA |
-9.04 |
0.409183 |
290 -- 297 |
24 -- 31 |
phosphate ABC transporter permease |
|
_____________289____________298\n_____________|______________|\n5'-CAG...CCGUA_________C____U-3'\n______________UUGCGCUGA_GCUC\n______________||:|:|::|_:|||\n______________AAUGUGGUU_UGAG\n3'-UUU...ACUAA_________A____UCAGU...UAG-5'\n_____________|______________|\n_____________32_____________23\n |
288 -- 294 |
181 -- 187 |
-13.2096 kcal/mol |
2.6708 kcal/mol |
3.40409 kcal/mol |
289 298@LB@ | |@LB@5'-CAG...CCGUA C U-3'@LB@ UUGCGCUGA GCUC@LB@ ||:|:|::| :|||@LB@ AAUGUGGUU UGAG@LB@3'-UUU...ACUAA A UCAGU...UAG-5'@LB@ | |@LB@ 32 23@LB@@LB@@LB@Energy -9.04 kcal/mol@LB@Hybridization Energy -13.2096 kcal/mol@LB@Unfolding Energy - mRNA 2.6708 kcal/mol@LB@Unfolding Energy - sRNA 3.40409 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 24 -- 31@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 181 -- 187@LB@ |
155 |
0.01733 |
0.3749 |
b3542 |
dppC |
-14.36 |
0.036537 |
40 -- 62 |
74 -- 93 |
dipeptide/heme ABC transporter permease |
|
_____________39_______________________________________________________63\n_____________|________________________________________________________|\n5'-GGG...UCGUC____U__U___C__________UA___C_____GA_______C_____________AGAAG...UCG-3'\n______________AACU_GC_GGU__GAUCUGCUG__CGG_GUGGU___AC_CCG_GUAUUC_GUCAUA\n______________|||:_||_|||__:||||||||__|||_|||:|___||_||:_:||:||_||||:|\n______________UUGG_CG_CCA__UUAGACGAC__GCC_CACUA___UG_GGU_UAUGAG_CAGUGU\n_____3'-UUUUUU____U__U___UA_________C__________AAA__U__________U______GUACU...UAG-5'\n_____________|________________________________________________________|\n_____________94_______________________________________________________73\n |
146 -- 152 |
200 -- 206 |
-46.3163 kcal/mol |
15.5571 kcal/mol |
18.3074 kcal/mol |
39 63@LB@ | |@LB@5'-GGG...UCGUC U U C UA C GA C AGAAG...UCG-3'@LB@ AACU GC GGU GAUCUGCUG CGG GUGGU AC CCG GUAUUC GUCAUA@LB@ |||: || ||| :|||||||| ||| |||:| || ||: :||:|| ||||:|@LB@ UUGG CG CCA UUAGACGAC GCC CACUA UG GGU UAUGAG CAGUGU@LB@ 3'-UUUUUU U U UA C AAA U U GUACU...UAG-5'@LB@ | |@LB@ 94 73@LB@@LB@@LB@Energy -14.36 kcal/mol@LB@Hybridization Energy -46.3163 kcal/mol@LB@Unfolding Energy - mRNA 15.5571 kcal/mol@LB@Unfolding Energy - sRNA 18.3074 kcal/mol@LB@@LB@Position - mRNA 40 -- 62@LB@Position - sRNA 74 -- 93@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 200 -- 206@LB@ |
156 |
0.01739 |
0.3749 |
b4332 |
yjiJ |
-7.83 |
0.625728 |
95 -- 115 |
80 -- 101 |
DUF1228 family putative inner membrane MFS superfamily transporter |
|
_____________94_______116\n_____________|________|\n5'-AAC...GGUUU________ACAUC...UUU-3'\n______________GUCGCAUA\n______________|||:||:|\n______________CAGUGUGU\n3'-UUU...UGAGU________ACUAC...UAG-5'\n_____________|________|\n_____________102______79\n |
23 -- 29 |
167 -- 173 |
-9.78459 kcal/mol |
1.62979 kcal/mol |
0.409692 kcal/mol |
94 116@LB@ | |@LB@5'-AAC...GGUUU ACAUC...UUU-3'@LB@ GUCGCAUA@LB@ |||:||:|@LB@ CAGUGUGU@LB@3'-UUU...UGAGU ACUAC...UAG-5'@LB@ | |@LB@ 102 79@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -9.78459 kcal/mol@LB@Unfolding Energy - mRNA 1.62979 kcal/mol@LB@Unfolding Energy - sRNA 0.409692 kcal/mol@LB@@LB@Position - mRNA 95 -- 115@LB@Position - sRNA 80 -- 101@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 167 -- 173@LB@ |
157 |
0.01768 |
0.3749 |
b1216 |
chaA |
-11.60 |
0.134178 |
242 -- 292 |
18 -- 65 |
calcium/sodium:proton antiporter |
|
_____________241_______________293\n_____________|_________________|\n5'-AUU...AAUGU_________C___A___UUUCU...GCC-3'\n______________UACCGAUAU_CAG_CAC\n______________:|||:|||:_|||_|||\n______________GUGGUUAUG_GUC_GUG\n3'-UUU...AAAAU_________A___A___UGUAC...UAG-5'\n_____________|_________________|\n_____________66________________17\n |
120 -- 126 |
178 -- 184 |
-16.2011 kcal/mol |
3.68451 kcal/mol |
4.86651 kcal/mol |
241 293@LB@ | |@LB@5'-AUU...AAUGU C A UUUCU...GCC-3'@LB@ UACCGAUAU CAG CAC@LB@ :|||:|||: ||| |||@LB@ GUGGUUAUG GUC GUG@LB@3'-UUU...AAAAU A A UGUAC...UAG-5'@LB@ | |@LB@ 66 17@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -16.2011 kcal/mol@LB@Unfolding Energy - mRNA 3.68451 kcal/mol@LB@Unfolding Energy - sRNA 4.86651 kcal/mol@LB@@LB@Position - mRNA 242 -- 292@LB@Position - sRNA 18 -- 65@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 178 -- 184@LB@ |
158 |
0.01775 |
0.3749 |
b1187 |
fadR |
-13.89 |
0.045798 |
42 -- 66 |
152 -- 176 |
fatty acid metabolism regulon transcriptional regulator |
|
_____________41________________________67\n_____________|_________________________|\n5'-AAA...CUUAA______G___G__GUG_________UUGAU...CAG-3'\n______________CGGUCA_GCA_GA___AGGCAAGUC\n______________|:||||_:||_||___|||||||||\n______________GUCAGU_UGU_CU___UCCGUUCAG\n3'-UUU...UAUGA______G___A__ACG_________UUGAA...UAG-5'\n_____________|_________________________|\n_____________177_______________________151\n |
60 -- 66 |
152 -- 158 |
-31.5031 kcal/mol |
7.04431 kcal/mol |
8.02398 kcal/mol |
41 67@LB@ | |@LB@5'-AAA...CUUAA G G GUG UUGAU...CAG-3'@LB@ CGGUCA GCA GA AGGCAAGUC@LB@ |:|||| :|| || |||||||||@LB@ GUCAGU UGU CU UCCGUUCAG@LB@3'-UUU...UAUGA G A ACG UUGAA...UAG-5'@LB@ | |@LB@ 177 151@LB@@LB@@LB@Energy -13.89 kcal/mol@LB@Hybridization Energy -31.5031 kcal/mol@LB@Unfolding Energy - mRNA 7.04431 kcal/mol@LB@Unfolding Energy - sRNA 8.02398 kcal/mol@LB@@LB@Position - mRNA 42 -- 66@LB@Position - sRNA 152 -- 176@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 152 -- 158@LB@ |
159 |
0.01779 |
0.3749 |
b2504 |
yfgG |
-11.18 |
0.162405 |
230 -- 250 |
168 -- 187 |
uncharacterized protein |
|
_____________229___________________251\n_____________|_____________________|\n5'-CCU...AAACG________UUAA_________GACCC...UUA-3'\n______________ACACCGAU____CAGUCGCAU\n______________|||||:||____|||||:||:\n______________UGUGGUUA____GUCAGUGUG\n3'-UUU...UAAAA________UGA__________UACUA...UAG-5'\n_____________|_____________________|\n_____________188___________________167\n |
244 -- 250 |
168 -- 174 |
-22.7597 kcal/mol |
5.28018 kcal/mol |
4.88067 kcal/mol |
229 251@LB@ | |@LB@5'-CCU...AAACG UUAA GACCC...UUA-3'@LB@ ACACCGAU CAGUCGCAU@LB@ |||||:|| |||||:||:@LB@ UGUGGUUA GUCAGUGUG@LB@3'-UUU...UAAAA UGA UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -11.18 kcal/mol@LB@Hybridization Energy -22.7597 kcal/mol@LB@Unfolding Energy - mRNA 5.28018 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 230 -- 250@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 168 -- 174@LB@ |
160 |
0.01787 |
0.3749 |
b3935 |
priA |
-8.27 |
0.542824 |
222 -- 250 |
110 -- 140 |
Primosome factor n' (replication factor Y) |
|
_____________221_________________________251\n_____________|___________________________|\n5'-GAA...UAACC______AU___A_____G_________UAUGC...GCG-3'\n______________CACCGA__UUC_AGUCA_G_AUGAUGC\n______________||||:|__:||_|||||_:_|||||||\n______________GUGGUU__GAG_UCAGU_U_UACUACG\n3'-UUU...AAAAU______AU_________G_G_______UCCGU...UAG-5'\n_____________|___________________________|\n_____________141_________________________109\n |
193 -- 199 |
161 -- 167 |
-24.457 kcal/mol |
4.47787 kcal/mol |
7.72013 kcal/mol |
221 251@LB@ | |@LB@5'-GAA...UAACC AU A G UAUGC...GCG-3'@LB@ CACCGA UUC AGUCA G AUGAUGC@LB@ ||||:| :|| ||||| : |||||||@LB@ GUGGUU GAG UCAGU U UACUACG@LB@3'-UUU...AAAAU AU G G UCCGU...UAG-5'@LB@ | |@LB@ 141 109@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -24.457 kcal/mol@LB@Unfolding Energy - mRNA 4.47787 kcal/mol@LB@Unfolding Energy - sRNA 7.72013 kcal/mol@LB@@LB@Position - mRNA 222 -- 250@LB@Position - sRNA 110 -- 140@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 161 -- 167@LB@ |