151 |
0.008943 |
0.2059 |
b1284 |
yciT |
-9.40 |
0.179701 |
94 -- 109 |
63 -- 77 |
global regulator of transcription; DeoR family |
|
_____________93_______________110\n_____________|________________|\n5'-GCA...CGAAG______U_________AACAA...CCA-3'\n______________GCACCG_GGGAGAUUU\n______________:||||:_||||:||:|\n______________UGUGGU_CCCUUUAGA\n3'-UUU...GCGGU________________ACCGA...GUG-5'\n_____________|________________|\n_____________78_______________62\n |
103 -- 109 |
63 -- 69 |
-19.5221 kcal/mol |
5.38652 kcal/mol |
4.72953 kcal/mol |
93 110@LB@ | |@LB@5'-GCA...CGAAG U AACAA...CCA-3'@LB@ GCACCG GGGAGAUUU@LB@ :||||: ||||:||:|@LB@ UGUGGU CCCUUUAGA@LB@3'-UUU...GCGGU ACCGA...GUG-5'@LB@ | |@LB@ 78 62@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -19.5221 kcal/mol@LB@Unfolding Energy - mRNA 5.38652 kcal/mol@LB@Unfolding Energy - sRNA 4.72953 kcal/mol@LB@@LB@Position - mRNA 94 -- 109@LB@Position - sRNA 63 -- 77@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 63 -- 69@LB@ |
152 |
0.009044 |
0.2059 |
b1448 |
mnaT |
-7.00 |
0.457084 |
229 -- 266 |
50 -- 86 |
methionine N-acyltransferase; L-amino acid N-acyltransferase |
|
_____________228____________________________________267\n_____________|______________________________________|\n5'-CGC...AGCCG_________C_____C________AUAACCA_______UUGUA...CGG-3'\n______________ACUGUGCUG_CAUUG_GGAAAUUU_______CGCCGUG\n______________||||:||::_||:::_||||||:|_______||||||:\n______________UGACGCGGU_GUGGU_CCUUUAGA_______GCGGCAU\n3'-UUU...GCUUA_________U_____C________ACCGAC________UUAAU...GUG-5'\n_____________|______________________________________|\n_____________87_____________________________________49\n |
260 -- 266 |
50 -- 56 |
-33.8437 kcal/mol |
9.99136 kcal/mol |
16.8518 kcal/mol |
228 267@LB@ | |@LB@5'-CGC...AGCCG C C AUAACCA UUGUA...CGG-3'@LB@ ACUGUGCUG CAUUG GGAAAUUU CGCCGUG@LB@ ||||:||:: ||::: ||||||:| ||||||:@LB@ UGACGCGGU GUGGU CCUUUAGA GCGGCAU@LB@3'-UUU...GCUUA U C ACCGAC UUAAU...GUG-5'@LB@ | |@LB@ 87 49@LB@@LB@@LB@Energy -7.00 kcal/mol@LB@Hybridization Energy -33.8437 kcal/mol@LB@Unfolding Energy - mRNA 9.99136 kcal/mol@LB@Unfolding Energy - sRNA 16.8518 kcal/mol@LB@@LB@Position - mRNA 229 -- 266@LB@Position - sRNA 50 -- 86@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 50 -- 56@LB@ |
153 |
0.009069 |
0.2059 |
b3529 |
yhjK |
-8.15 |
0.299018 |
186 -- 212 |
47 -- 74 |
cyclic-di-GMP phosphodiesterase |
|
_____________185__________________________213\n_____________|____________________________|\n5'-AGC...GAUUU_________GACAAU_____________CGCUC...AUC-3'\n______________CCGGGGGGA______UUGCG_CGUAAGU\n______________||:|||::|______:||||_|||||:|\n______________GGUCCCUUU______GACGC_GCAUUUA\n3'-UUU...GUUGU_________AGAACC_____G_______AUAAU...GUG-5'\n_____________|____________________________|\n_____________75___________________________46\n |
187 -- 193 |
67 -- 73 |
-27.1977 kcal/mol |
10.2409 kcal/mol |
8.80319 kcal/mol |
185 213@LB@ | |@LB@5'-AGC...GAUUU GACAAU CGCUC...AUC-3'@LB@ CCGGGGGGA UUGCG CGUAAGU@LB@ ||:|||::| :|||| |||||:|@LB@ GGUCCCUUU GACGC GCAUUUA@LB@3'-UUU...GUUGU AGAACC G AUAAU...GUG-5'@LB@ | |@LB@ 75 46@LB@@LB@@LB@Energy -8.15 kcal/mol@LB@Hybridization Energy -27.1977 kcal/mol@LB@Unfolding Energy - mRNA 10.2409 kcal/mol@LB@Unfolding Energy - sRNA 8.80319 kcal/mol@LB@@LB@Position - mRNA 186 -- 212@LB@Position - sRNA 47 -- 74@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 67 -- 73@LB@ |
154 |
0.009082 |
0.2059 |
b2676 |
nrdF |
-13.94 |
0.023769 |
159 -- 176 |
53 -- 69 |
ribonucleoside-diphosphate reductase 2 beta subunit ferritin-like protein |
|
_____________158________________177\n_____________|__________________|\n5'-AAG...GCACU______GAA_________UCCUG...CAG-3'\n______________GAAAUU___GGCUGCGUC\n______________|||||:___|||||||:|\n______________CUUUAG___CCGACGCGG\n3'-UUU...GGUCC______AA__________CAUUU...GUG-5'\n_____________|__________________|\n_____________70_________________52\n |
170 -- 176 |
53 -- 59 |
-23.1658 kcal/mol |
2.38862 kcal/mol |
6.83371 kcal/mol |
158 177@LB@ | |@LB@5'-AAG...GCACU GAA UCCUG...CAG-3'@LB@ GAAAUU GGCUGCGUC@LB@ |||||: |||||||:|@LB@ CUUUAG CCGACGCGG@LB@3'-UUU...GGUCC AA CAUUU...GUG-5'@LB@ | |@LB@ 70 52@LB@@LB@@LB@Energy -13.94 kcal/mol@LB@Hybridization Energy -23.1658 kcal/mol@LB@Unfolding Energy - mRNA 2.38862 kcal/mol@LB@Unfolding Energy - sRNA 6.83371 kcal/mol@LB@@LB@Position - mRNA 159 -- 176@LB@Position - sRNA 53 -- 69@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 53 -- 59@LB@ |
155 |
0.009115 |
0.2059 |
b1531 |
marA |
-9.94 |
0.142609 |
213 -- 231 |
72 -- 89 |
multiple antibiotic resistance transcriptional regulator |
|
_____________212_________________232\n_____________|___________________|\n5'-AAG...GACGC_______A_____U_____UUCAU...AGC-3'\n______________AAUACUG_CGCUA_UACCA\n______________|||||||_|||:|_:||||\n______________UUAUGAC_GCGGU_GUGGU\n3'-UUU...CGCGC_____________U_____CCCUU...GUG-5'\n_____________|___________________|\n_____________90__________________71\n |
213 -- 219 |
83 -- 89 |
-21.2611 kcal/mol |
3.54366 kcal/mol |
7.77515 kcal/mol |
212 232@LB@ | |@LB@5'-AAG...GACGC A U UUCAU...AGC-3'@LB@ AAUACUG CGCUA UACCA@LB@ ||||||| |||:| :||||@LB@ UUAUGAC GCGGU GUGGU@LB@3'-UUU...CGCGC U CCCUU...GUG-5'@LB@ | |@LB@ 90 71@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -21.2611 kcal/mol@LB@Unfolding Energy - mRNA 3.54366 kcal/mol@LB@Unfolding Energy - sRNA 7.77515 kcal/mol@LB@@LB@Position - mRNA 213 -- 231@LB@Position - sRNA 72 -- 89@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 83 -- 89@LB@ |
156 |
0.009123 |
0.2059 |
b2683 |
ygaH |
-13.79 |
0.025463 |
164 -- 213 |
27 -- 86 |
putative L-valine exporter norvaline resistance protein |
|
_____________163______________________________________________________________214\n_____________|________________________________________________________________|\n5'-AUU...GCCUC_________________CAU________AAGGA_____C_________________C_______UUCUG...CAA-3'\n______________ACUGCGUUAAU_CCAGG____UC_UGGC_____GCGCC____________GAUGAG_UAUGAGG\n______________||||||::||:_|||||____||_||||_____|||||____________||||||_||::|||\n______________UGACGCGGUUG_GGUCC____AG_ACCG_____CGCGG____________CUACUC_AUGUUCC\n3'-UUU...GCUUA___________U_____CUUU__A____A_________CAUUUAAUAAUA______A_______CGUGU...GUG-5'\n_____________|________________________________________________________________|\n_____________87_______________________________________________________________26\n |
207 -- 213 |
27 -- 33 |
-50.2075 kcal/mol |
19.3484 kcal/mol |
17.0667 kcal/mol |
163 214@LB@ | |@LB@5'-AUU...GCCUC CAU AAGGA C C UUCUG...CAA-3'@LB@ ACUGCGUUAAU CCAGG UC UGGC GCGCC GAUGAG UAUGAGG@LB@ ||||||::||: ||||| || |||| ||||| |||||| ||::|||@LB@ UGACGCGGUUG GGUCC AG ACCG CGCGG CUACUC AUGUUCC@LB@3'-UUU...GCUUA U CUUU A A CAUUUAAUAAUA A CGUGU...GUG-5'@LB@ | |@LB@ 87 26@LB@@LB@@LB@Energy -13.79 kcal/mol@LB@Hybridization Energy -50.2075 kcal/mol@LB@Unfolding Energy - mRNA 19.3484 kcal/mol@LB@Unfolding Energy - sRNA 17.0667 kcal/mol@LB@@LB@Position - mRNA 164 -- 213@LB@Position - sRNA 27 -- 86@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 27 -- 33@LB@ |
157 |
0.009216 |
0.2062 |
b3361 |
fic |
-9.77 |
0.153316 |
103 -- 112 |
5 -- 14 |
stationary phase-induced protein putative toxin |
|
_____________102________113\n_____________|__________|\n5'-CGC...CGUAA__________AGUCG...AAC-3'\n______________UUUUCAGGCC\n______________||||||||||\n______________AAAAGUCCGG\n3'-UUU...UGACA__________CGUG-5'\n_____________|__________|\n_____________15_________4\n |
106 -- 112 |
5 -- 11 |
-15.6889 kcal/mol |
1.64573 kcal/mol |
4.24834 kcal/mol |
102 113@LB@ | |@LB@5'-CGC...CGUAA AGUCG...AAC-3'@LB@ UUUUCAGGCC@LB@ ||||||||||@LB@ AAAAGUCCGG@LB@3'-UUU...UGACA CGUG-5'@LB@ | |@LB@ 15 4@LB@@LB@@LB@Energy -9.77 kcal/mol@LB@Hybridization Energy -15.6889 kcal/mol@LB@Unfolding Energy - mRNA 1.64573 kcal/mol@LB@Unfolding Energy - sRNA 4.24834 kcal/mol@LB@@LB@Position - mRNA 103 -- 112@LB@Position - sRNA 5 -- 14@LB@Position Seed - mRNA 106 -- 112@LB@Position Seed - sRNA 5 -- 11@LB@ |
158 |
0.009324 |
0.2062 |
b3574 |
yiaJ |
-10.56 |
0.109206 |
175 -- 190 |
70 -- 85 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________174______________191\n_____________|________________|\n5'-CCC...ACACU________C_______ACGCG...UUG-3'\n______________UUGCGCUA_CAUCAGG\n______________:|||||:|_||:||||\n______________GACGCGGU_GUGGUCC\n3'-UUU...CUUAU________U_______CUUUA...GUG-5'\n_____________|________________|\n_____________86_______________69\n |
184 -- 190 |
70 -- 76 |
-22.9924 kcal/mol |
5.16069 kcal/mol |
7.27689 kcal/mol |
174 191@LB@ | |@LB@5'-CCC...ACACU C ACGCG...UUG-3'@LB@ UUGCGCUA CAUCAGG@LB@ :|||||:| ||:||||@LB@ GACGCGGU GUGGUCC@LB@3'-UUU...CUUAU U CUUUA...GUG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -22.9924 kcal/mol@LB@Unfolding Energy - mRNA 5.16069 kcal/mol@LB@Unfolding Energy - sRNA 7.27689 kcal/mol@LB@@LB@Position - mRNA 175 -- 190@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 70 -- 76@LB@ |
159 |
0.009346 |
0.2062 |
b3661 |
nlpA |
-7.63 |
0.365650 |
232 -- 240 |
1 -- 9 |
cytoplasmic membrane lipoprotein-28 |
|
_____________231_______241\n_____________|_________|\n5'-UGU...GACAG_________UAUUG...ACA-3'\n______________GGGCCGCAU\n______________:|||||||:\n______________UCCGGCGUG\n3'-UUU...AAAAG_________-5'\n_____________|________|\n_____________10_______1\n |
234 -- 240 |
1 -- 7 |
-16.6231 kcal/mol |
3.46198 kcal/mol |
5.10726 kcal/mol |
231 241@LB@ | |@LB@5'-UGU...GACAG UAUUG...ACA-3'@LB@ GGGCCGCAU@LB@ :|||||||:@LB@ UCCGGCGUG@LB@3'-UUU...AAAAG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -7.63 kcal/mol@LB@Hybridization Energy -16.6231 kcal/mol@LB@Unfolding Energy - mRNA 3.46198 kcal/mol@LB@Unfolding Energy - sRNA 5.10726 kcal/mol@LB@@LB@Position - mRNA 232 -- 240@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
160 |
0.009416 |
0.2062 |
b2095 |
gatZ |
-8.10 |
0.305092 |
155 -- 170 |
18 -- 33 |
D-tagatose 1 6-bisphosphate aldolase 2 subunit |
b3132 |
_____________154______________171\n_____________|________________|\n5'-AAU...GUGGC__________G_____AACGC...UUG-3'\n______________UGCGAGGGCA_GGCAU\n______________|:|:||||||_:|||:\n______________AUGUUCCCGU_UCGUG\n3'-UUU...ACUCA__________G_____ACAAA...GUG-5'\n_____________|________________|\n_____________34_______________17\n |
158 -- 164 |
24 -- 30 |
-26.3287 kcal/mol |
9.40457 kcal/mol |
8.82204 kcal/mol |
154 171@LB@ | |@LB@5'-AAU...GUGGC G AACGC...UUG-3'@LB@ UGCGAGGGCA GGCAU@LB@ |:|:|||||| :|||:@LB@ AUGUUCCCGU UCGUG@LB@3'-UUU...ACUCA G ACAAA...GUG-5'@LB@ | |@LB@ 34 17@LB@@LB@@LB@Energy -8.10 kcal/mol@LB@Hybridization Energy -26.3287 kcal/mol@LB@Unfolding Energy - mRNA 9.40457 kcal/mol@LB@Unfolding Energy - sRNA 8.82204 kcal/mol@LB@@LB@Position - mRNA 155 -- 170@LB@Position - sRNA 18 -- 33@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 24 -- 30@LB@ |