158 |
0.01775 |
0.3749 |
b1187 |
fadR |
-13.89 |
0.045798 |
42 -- 66 |
152 -- 176 |
fatty acid metabolism regulon transcriptional regulator |
|
_____________41________________________67\n_____________|_________________________|\n5'-AAA...CUUAA______G___G__GUG_________UUGAU...CAG-3'\n______________CGGUCA_GCA_GA___AGGCAAGUC\n______________|:||||_:||_||___|||||||||\n______________GUCAGU_UGU_CU___UCCGUUCAG\n3'-UUU...UAUGA______G___A__ACG_________UUGAA...UAG-5'\n_____________|_________________________|\n_____________177_______________________151\n |
60 -- 66 |
152 -- 158 |
-31.5031 kcal/mol |
7.04431 kcal/mol |
8.02398 kcal/mol |
41 67@LB@ | |@LB@5'-AAA...CUUAA G G GUG UUGAU...CAG-3'@LB@ CGGUCA GCA GA AGGCAAGUC@LB@ |:|||| :|| || |||||||||@LB@ GUCAGU UGU CU UCCGUUCAG@LB@3'-UUU...UAUGA G A ACG UUGAA...UAG-5'@LB@ | |@LB@ 177 151@LB@@LB@@LB@Energy -13.89 kcal/mol@LB@Hybridization Energy -31.5031 kcal/mol@LB@Unfolding Energy - mRNA 7.04431 kcal/mol@LB@Unfolding Energy - sRNA 8.02398 kcal/mol@LB@@LB@Position - mRNA 42 -- 66@LB@Position - sRNA 152 -- 176@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 152 -- 158@LB@ |
153 |
0.01719 |
0.3749 |
b2997 |
hybO |
-10.59 |
0.212773 |
44 -- 57 |
176 -- 189 |
hydrogenase 2 small subunit |
|
_____________43_________________58\n_____________|__________________|\n5'-CUC...AUUAA______________CU__CCUUC...GCA-3'\n______________UUACACUAAUGCUU__UC\n______________||||||:|||:||:__||\n______________AAUGUGGUUAUGAG__AG\n3'-UUU...ACUAA______________UC__UGUGU...UAG-5'\n_____________|__________________|\n_____________190________________175\n |
51 -- 57 |
176 -- 182 |
-17.3647 kcal/mol |
0.828093 kcal/mol |
4.66778 kcal/mol |
43 58@LB@ | |@LB@5'-CUC...AUUAA CU CCUUC...GCA-3'@LB@ UUACACUAAUGCUU UC@LB@ ||||||:|||:||: ||@LB@ AAUGUGGUUAUGAG AG@LB@3'-UUU...ACUAA UC UGUGU...UAG-5'@LB@ | |@LB@ 190 175@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -17.3647 kcal/mol@LB@Unfolding Energy - mRNA 0.828093 kcal/mol@LB@Unfolding Energy - sRNA 4.66778 kcal/mol@LB@@LB@Position - mRNA 44 -- 57@LB@Position - sRNA 176 -- 189@LB@Position Seed - mRNA 51 -- 57@LB@Position Seed - sRNA 176 -- 182@LB@ |
161 |
0.01797 |
0.3749 |
b1921 |
fliZ |
-13.03 |
0.068461 |
73 -- 137 |
125 -- 204 |
RpoS antagonist; putative regulator of FliA activity |
|
_____________72__________________________________________138\n_____________|___________________________________________|\n5'-UGC...GAGGU_______AU______G___C_G___________GC________UAUUA...AUC-3'\n______________CGGG_GA_____CGC_GGU_A_UCAGUUACACA_____CAGGC\n______________||||_||_____|:|_::|_|_|||||:|||||_____|||||\n______________GCCC_CU_____GUG_UUA_U_AGUCAGUGUGU_____GUCCG\n3'-UUU...CGACC____A__AAAAU___G_____G___________ACUAC_____UUCAG...UAG-5'\n_____________|___________________________________________|\n_____________205_________________________________________124\n |
105 -- 111 |
167 -- 173 |
-36.0631 kcal/mol |
8.93512 kcal/mol |
13.9606 kcal/mol |
72 138@LB@ | |@LB@5'-UGC...GAGGU AU G C G GC UAUUA...AUC-3'@LB@ CGGG GA CGC GGU A UCAGUUACACA CAGGC@LB@ |||| || |:| ::| | |||||:||||| |||||@LB@ GCCC CU GUG UUA U AGUCAGUGUGU GUCCG@LB@3'-UUU...CGACC A AAAAU G G ACUAC UUCAG...UAG-5'@LB@ | |@LB@ 205 124@LB@@LB@@LB@Energy -13.03 kcal/mol@LB@Hybridization Energy -36.0631 kcal/mol@LB@Unfolding Energy - mRNA 8.93512 kcal/mol@LB@Unfolding Energy - sRNA 13.9606 kcal/mol@LB@@LB@Position - mRNA 73 -- 137@LB@Position - sRNA 125 -- 204@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 167 -- 173@LB@ |
156 |
0.01739 |
0.3749 |
b4332 |
yjiJ |
-7.83 |
0.625728 |
95 -- 115 |
80 -- 101 |
DUF1228 family putative inner membrane MFS superfamily transporter |
|
_____________94_______116\n_____________|________|\n5'-AAC...GGUUU________ACAUC...UUU-3'\n______________GUCGCAUA\n______________|||:||:|\n______________CAGUGUGU\n3'-UUU...UGAGU________ACUAC...UAG-5'\n_____________|________|\n_____________102______79\n |
23 -- 29 |
167 -- 173 |
-9.78459 kcal/mol |
1.62979 kcal/mol |
0.409692 kcal/mol |
94 116@LB@ | |@LB@5'-AAC...GGUUU ACAUC...UUU-3'@LB@ GUCGCAUA@LB@ |||:||:|@LB@ CAGUGUGU@LB@3'-UUU...UGAGU ACUAC...UAG-5'@LB@ | |@LB@ 102 79@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -9.78459 kcal/mol@LB@Unfolding Energy - mRNA 1.62979 kcal/mol@LB@Unfolding Energy - sRNA 0.409692 kcal/mol@LB@@LB@Position - mRNA 95 -- 115@LB@Position - sRNA 80 -- 101@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 167 -- 173@LB@ |
150 |
0.01679 |
0.3749 |
b3550 |
yiaC |
-14.78 |
0.030008 |
125 -- 180 |
123 -- 174 |
GNAT family putative N-acetyltransferase |
|
_____________124_______________________________________________181\n_____________|_________________________________________________|\n5'-AAU...UCUGU_____CU_______G_C________U___G___GA______________GGCUG...GGC-3'\n______________UACUC__UUAUGCA_G_AUGUGGGC_GGU_AAU__UCA____UGUGGUU\n______________|||||__|:|::||_|_|||::|||_:||_||:__|||____||:|||:\n______________AUGAG__AGUGUGU_C_UACGUCCG_UCA_UUG__AGU____ACGCCAG\n3'-UUU...UGGUU_____UC_______A__________U___G___AA___CUUA_______UAGGG...UAG-5'\n_____________|_________________________________________________|\n_____________175_______________________________________________122\n |
134 -- 140 |
167 -- 173 |
-39.4647 kcal/mol |
14.8163 kcal/mol |
12.8033 kcal/mol |
124 181@LB@ | |@LB@5'-AAU...UCUGU CU G C U G GA GGCUG...GGC-3'@LB@ UACUC UUAUGCA G AUGUGGGC GGU AAU UCA UGUGGUU@LB@ ||||| |:|::|| | |||::||| :|| ||: ||| ||:|||:@LB@ AUGAG AGUGUGU C UACGUCCG UCA UUG AGU ACGCCAG@LB@3'-UUU...UGGUU UC A U G AA CUUA UAGGG...UAG-5'@LB@ | |@LB@ 175 122@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -39.4647 kcal/mol@LB@Unfolding Energy - mRNA 14.8163 kcal/mol@LB@Unfolding Energy - sRNA 12.8033 kcal/mol@LB@@LB@Position - mRNA 125 -- 180@LB@Position - sRNA 123 -- 174@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 167 -- 173@LB@ |
162 |
0.01805 |
0.3749 |
b2499 |
purM |
-13.07 |
0.067336 |
182 -- 195 |
13 -- 27 |
phosphoribosylaminoimidazole synthetase |
|
_____________181______196\n_____________|________|\n__________5'-U________AUGGU...CGC-3'\n______________AUAUUCAG\n______________|||:||||\n______________UAUGAGUC\n3'-UUU...GUGGU________AGUGU...UAG-5'\n_____________|________|\n_____________28_______12\n |
3 -- 9 |
174 -- 180 |
-7.89877 kcal/mol |
1.882 kcal/mol |
0.273058 kcal/mol |
181 196@LB@ | |@LB@ 5'-U AUGGU...CGC-3'@LB@ AUAUUCAG@LB@ |||:||||@LB@ UAUGAGUC@LB@3'-UUU...GUGGU AGUGU...UAG-5'@LB@ | |@LB@ 28 12@LB@@LB@@LB@Energy -13.07 kcal/mol@LB@Hybridization Energy -7.89877 kcal/mol@LB@Unfolding Energy - mRNA 1.882 kcal/mol@LB@Unfolding Energy - sRNA 0.273058 kcal/mol@LB@@LB@Position - mRNA 182 -- 195@LB@Position - sRNA 13 -- 27@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 174 -- 180@LB@ |
152 |
0.0171 |
0.3749 |
b3605 |
lldD |
-10.23 |
0.248595 |
212 -- 221 |
68 -- 77 |
L-lactate dehydrogenase FMN-linked |
|
_____________211_______222\n_____________|_________|\n5'-UUU...GAAAA_________UAUUU...ACA-3'\n______________ACGCAUGAU\n______________||:||||||\n______________UGUGUACUA\n3'-UUU...GUCAG_________CGUCC...UAG-5'\n_____________|_________|\n_____________78________67\n |
199 -- 205 |
163 -- 169 |
-11.1438 kcal/mol |
1.00002 kcal/mol |
4.14962 kcal/mol |
211 222@LB@ | |@LB@5'-UUU...GAAAA UAUUU...ACA-3'@LB@ ACGCAUGAU@LB@ ||:||||||@LB@ UGUGUACUA@LB@3'-UUU...GUCAG CGUCC...UAG-5'@LB@ | |@LB@ 78 67@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -11.1438 kcal/mol@LB@Unfolding Energy - mRNA 1.00002 kcal/mol@LB@Unfolding Energy - sRNA 4.14962 kcal/mol@LB@@LB@Position - mRNA 212 -- 221@LB@Position - sRNA 68 -- 77@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
160 |
0.01787 |
0.3749 |
b3935 |
priA |
-8.27 |
0.542824 |
222 -- 250 |
110 -- 140 |
Primosome factor n' (replication factor Y) |
|
_____________221_________________________251\n_____________|___________________________|\n5'-GAA...UAACC______AU___A_____G_________UAUGC...GCG-3'\n______________CACCGA__UUC_AGUCA_G_AUGAUGC\n______________||||:|__:||_|||||_:_|||||||\n______________GUGGUU__GAG_UCAGU_U_UACUACG\n3'-UUU...AAAAU______AU_________G_G_______UCCGU...UAG-5'\n_____________|___________________________|\n_____________141_________________________109\n |
193 -- 199 |
161 -- 167 |
-24.457 kcal/mol |
4.47787 kcal/mol |
7.72013 kcal/mol |
221 251@LB@ | |@LB@5'-GAA...UAACC AU A G UAUGC...GCG-3'@LB@ CACCGA UUC AGUCA G AUGAUGC@LB@ ||||:| :|| ||||| : |||||||@LB@ GUGGUU GAG UCAGU U UACUACG@LB@3'-UUU...AAAAU AU G G UCCGU...UAG-5'@LB@ | |@LB@ 141 109@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -24.457 kcal/mol@LB@Unfolding Energy - mRNA 4.47787 kcal/mol@LB@Unfolding Energy - sRNA 7.72013 kcal/mol@LB@@LB@Position - mRNA 222 -- 250@LB@Position - sRNA 110 -- 140@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 161 -- 167@LB@ |
159 |
0.01779 |
0.3749 |
b2504 |
yfgG |
-11.18 |
0.162405 |
230 -- 250 |
168 -- 187 |
uncharacterized protein |
|
_____________229___________________251\n_____________|_____________________|\n5'-CCU...AAACG________UUAA_________GACCC...UUA-3'\n______________ACACCGAU____CAGUCGCAU\n______________|||||:||____|||||:||:\n______________UGUGGUUA____GUCAGUGUG\n3'-UUU...UAAAA________UGA__________UACUA...UAG-5'\n_____________|_____________________|\n_____________188___________________167\n |
244 -- 250 |
168 -- 174 |
-22.7597 kcal/mol |
5.28018 kcal/mol |
4.88067 kcal/mol |
229 251@LB@ | |@LB@5'-CCU...AAACG UUAA GACCC...UUA-3'@LB@ ACACCGAU CAGUCGCAU@LB@ |||||:|| |||||:||:@LB@ UGUGGUUA GUCAGUGUG@LB@3'-UUU...UAAAA UGA UACUA...UAG-5'@LB@ | |@LB@ 188 167@LB@@LB@@LB@Energy -11.18 kcal/mol@LB@Hybridization Energy -22.7597 kcal/mol@LB@Unfolding Energy - mRNA 5.28018 kcal/mol@LB@Unfolding Energy - sRNA 4.88067 kcal/mol@LB@@LB@Position - mRNA 230 -- 250@LB@Position - sRNA 168 -- 187@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 168 -- 174@LB@ |
157 |
0.01768 |
0.3749 |
b1216 |
chaA |
-11.60 |
0.134178 |
242 -- 292 |
18 -- 65 |
calcium/sodium:proton antiporter |
|
_____________241_______________293\n_____________|_________________|\n5'-AUU...AAUGU_________C___A___UUUCU...GCC-3'\n______________UACCGAUAU_CAG_CAC\n______________:|||:|||:_|||_|||\n______________GUGGUUAUG_GUC_GUG\n3'-UUU...AAAAU_________A___A___UGUAC...UAG-5'\n_____________|_________________|\n_____________66________________17\n |
120 -- 126 |
178 -- 184 |
-16.2011 kcal/mol |
3.68451 kcal/mol |
4.86651 kcal/mol |
241 293@LB@ | |@LB@5'-AUU...AAUGU C A UUUCU...GCC-3'@LB@ UACCGAUAU CAG CAC@LB@ :|||:|||: ||| |||@LB@ GUGGUUAUG GUC GUG@LB@3'-UUU...AAAAU A A UGUAC...UAG-5'@LB@ | |@LB@ 66 17@LB@@LB@@LB@Energy -11.60 kcal/mol@LB@Hybridization Energy -16.2011 kcal/mol@LB@Unfolding Energy - mRNA 3.68451 kcal/mol@LB@Unfolding Energy - sRNA 4.86651 kcal/mol@LB@@LB@Position - mRNA 242 -- 292@LB@Position - sRNA 18 -- 65@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 178 -- 184@LB@ |