150 |
0.01547 |
0.3321 |
b3736 |
atpF |
-5.86 |
0.208717 |
262 -- 272 |
37 -- 47 |
F0 sector of membrane-bound ATP synthase subunit b |
|
_____________261_________273\n_____________|___________|\n5'-AUU...GUUCU___U_______GUAUG...UCG-3'\n______________GCA_GAAGUAC\n______________|||_||||:||\n______________CGU_CUUCGUG\n3'-UUU...GAAUU___U_______AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
266 -- 272 |
37 -- 43 |
-12.6044 kcal/mol |
1.50868 kcal/mol |
5.23944 kcal/mol |
261 273@LB@ | |@LB@5'-AUU...GUUCU U GUAUG...UCG-3'@LB@ GCA GAAGUAC@LB@ ||| ||||:||@LB@ CGU CUUCGUG@LB@3'-UUU...GAAUU U AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -5.86 kcal/mol@LB@Hybridization Energy -12.6044 kcal/mol@LB@Unfolding Energy - mRNA 1.50868 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 262 -- 272@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 37 -- 43@LB@ |
151 |
0.0157 |
0.3349 |
b0586 |
entF |
-8.26 |
0.051334 |
189 -- 199 |
37 -- 47 |
enterobactin synthase multienzyme complex component ATP-dependent |
|
_____________188_________200\n_____________|___________|\n5'-CCC...CAGUU___________AAUGA...UUG-3'\n______________GCAGGAGGCAC\n______________|||:||:||||\n______________CGUUCUUCGUG\n3'-UUU...GAAUU___________AAUUU...CAA-5'\n_____________|___________|\n_____________48__________36\n |
193 -- 199 |
37 -- 43 |
-17.6877 kcal/mol |
4.1913 kcal/mol |
5.23944 kcal/mol |
188 200@LB@ | |@LB@5'-CCC...CAGUU AAUGA...UUG-3'@LB@ GCAGGAGGCAC@LB@ |||:||:||||@LB@ CGUUCUUCGUG@LB@3'-UUU...GAAUU AAUUU...CAA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -17.6877 kcal/mol@LB@Unfolding Energy - mRNA 4.1913 kcal/mol@LB@Unfolding Energy - sRNA 5.23944 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
153 |
0.016 |
0.3359 |
b2167 |
fruA |
-4.10 |
0.476180 |
191 -- 199 |
37 -- 45 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________190_______200\n_____________|_________|\n5'-CGC...AGCAG_________AAUGA...AAA-3'\n______________GAGAGGCAU\n______________:|||:|||:\n______________UUCUUCGUG\n3'-UUU...AUUCG_________AAUUU...CAA-5'\n_____________|_________|\n_____________46________36\n |
193 -- 199 |
37 -- 43 |
-10.9543 kcal/mol |
1.97714 kcal/mol |
4.8783 kcal/mol |
190 200@LB@ | |@LB@5'-CGC...AGCAG AAUGA...AAA-3'@LB@ GAGAGGCAU@LB@ :|||:|||:@LB@ UUCUUCGUG@LB@3'-UUU...AUUCG AAUUU...CAA-5'@LB@ | |@LB@ 46 36@LB@@LB@@LB@Energy -4.10 kcal/mol@LB@Hybridization Energy -10.9543 kcal/mol@LB@Unfolding Energy - mRNA 1.97714 kcal/mol@LB@Unfolding Energy - sRNA 4.8783 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 37 -- 45@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 37 -- 43@LB@ |
152 |
0.01589 |
0.3359 |
b3428 |
glgP |
-3.42 |
0.610648 |
252 -- 258 |
36 -- 42 |
glycogen phosphorylase |
|
_____________251_____259\n_____________|_______|\n5'-CCA...CUCUU_______CUAUC...CGG-3'\n______________AAGCACU\n______________|||||||\n______________UUCGUGA\n3'-UUU...CGUUC_______AUUUU...CAA-5'\n_____________|_______|\n_____________43______35\n |
252 -- 258 |
36 -- 42 |
-8.34293 kcal/mol |
3.32239 kcal/mol |
1.60154 kcal/mol |
251 259@LB@ | |@LB@5'-CCA...CUCUU CUAUC...CGG-3'@LB@ AAGCACU@LB@ |||||||@LB@ UUCGUGA@LB@3'-UUU...CGUUC AUUUU...CAA-5'@LB@ | |@LB@ 43 35@LB@@LB@@LB@Energy -3.42 kcal/mol@LB@Hybridization Energy -8.34293 kcal/mol@LB@Unfolding Energy - mRNA 3.32239 kcal/mol@LB@Unfolding Energy - sRNA 1.60154 kcal/mol@LB@@LB@Position - mRNA 252 -- 258@LB@Position - sRNA 36 -- 42@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 36 -- 42@LB@ |
154 |
0.01606 |
0.3359 |
b2587 |
kgtP |
-4.55 |
0.394910 |
6 -- 12 |
52 -- 58 |
alpha-ketoglutarate transporter |
|
_____________5_______13\n_____________|_______|\n______5'-UCCCC_______CCACU...UCG-3'\n______________AACUUGC\n______________|||||||\n______________UUGAACG\n3'-UUU...CUACU_______AAUUC...CAA-5'\n_____________|_______|\n_____________59______51\n |
6 -- 12 |
52 -- 58 |
-7.82918 kcal/mol |
0.15004 kcal/mol |
3.13411 kcal/mol |
5 13@LB@ | |@LB@ 5'-UCCCC CCACU...UCG-3'@LB@ AACUUGC@LB@ |||||||@LB@ UUGAACG@LB@3'-UUU...CUACU AAUUC...CAA-5'@LB@ | |@LB@ 59 51@LB@@LB@@LB@Energy -4.55 kcal/mol@LB@Hybridization Energy -7.82918 kcal/mol@LB@Unfolding Energy - mRNA 0.15004 kcal/mol@LB@Unfolding Energy - sRNA 3.13411 kcal/mol@LB@@LB@Position - mRNA 6 -- 12@LB@Position - sRNA 52 -- 58@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 52 -- 58@LB@ |
155 |
0.01672 |
0.3455 |
b1686 |
menI |
-4.77 |
0.356790 |
227 -- 235 |
36 -- 44 |
1 4-dihydroxy-2-naphthoyl-CoA hydrolase |
|
_____________226_______236\n_____________|_________|\n5'-GGC...ACCCU_________GAAUG...AUG-3'\n______________GGAAGCACU\n______________:||||||||\n______________UCUUCGUGA\n3'-UUU...UUCGU_________AUUUU...CAA-5'\n_____________|_________|\n_____________45________35\n |
229 -- 235 |
36 -- 42 |
-13.4239 kcal/mol |
4.1512 kcal/mol |
4.5009 kcal/mol |
226 236@LB@ | |@LB@5'-GGC...ACCCU GAAUG...AUG-3'@LB@ GGAAGCACU@LB@ :||||||||@LB@ UCUUCGUGA@LB@3'-UUU...UUCGU AUUUU...CAA-5'@LB@ | |@LB@ 45 35@LB@@LB@@LB@Energy -4.77 kcal/mol@LB@Hybridization Energy -13.4239 kcal/mol@LB@Unfolding Energy - mRNA 4.1512 kcal/mol@LB@Unfolding Energy - sRNA 4.5009 kcal/mol@LB@@LB@Position - mRNA 227 -- 235@LB@Position - sRNA 36 -- 44@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 36 -- 42@LB@ |
156 |
0.01673 |
0.3455 |
b0740 |
tolB |
-6.75 |
0.127692 |
202 -- 229 |
33 -- 61 |
periplasmic protein |
|
_____________201____________________________230\n_____________|______________________________|\n5'-UCC...UAUGA______AG__A_________U_________UUUUC...CCG-3'\n______________UGAAGC__GC_UUA__CGAG_AGCAUUUGG\n______________||||:|__||_|||__|:||_||||:||::\n______________ACUUUG__CG_AAU__GUUC_UCGUGAAUU\n3'-UUU...GCCCU______AA______UC____U_________UUUUA...CAA-5'\n_____________|______________________________|\n_____________62_____________________________32\n |
222 -- 228 |
34 -- 40 |
-20.0945 kcal/mol |
5.97693 kcal/mol |
7.37029 kcal/mol |
201 230@LB@ | |@LB@5'-UCC...UAUGA AG A U UUUUC...CCG-3'@LB@ UGAAGC GC UUA CGAG AGCAUUUGG@LB@ ||||:| || ||| |:|| ||||:||::@LB@ ACUUUG CG AAU GUUC UCGUGAAUU@LB@3'-UUU...GCCCU AA UC U UUUUA...CAA-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -20.0945 kcal/mol@LB@Unfolding Energy - mRNA 5.97693 kcal/mol@LB@Unfolding Energy - sRNA 7.37029 kcal/mol@LB@@LB@Position - mRNA 202 -- 229@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 34 -- 40@LB@ |
157 |
0.01701 |
0.3489 |
b3856 |
mobB |
-4.94 |
0.329991 |
189 -- 197 |
52 -- 60 |
molybdopterin-guanine dinucleotide biosynthesis protein B |
|
_____________188_______198\n_____________|_________|\n5'-GUG...CCAGA_________CCGAU...CCA-3'\n______________GGAGCUUGC\n______________|:|:|||||\n______________CUUUGAACG\n3'-UUU...CCCUA_________AAUUC...CAA-5'\n_____________|_________|\n_____________61________51\n |
191 -- 197 |
52 -- 58 |
-10.6989 kcal/mol |
2.59286 kcal/mol |
3.16562 kcal/mol |
188 198@LB@ | |@LB@5'-GUG...CCAGA CCGAU...CCA-3'@LB@ GGAGCUUGC@LB@ |:|:|||||@LB@ CUUUGAACG@LB@3'-UUU...CCCUA AAUUC...CAA-5'@LB@ | |@LB@ 61 51@LB@@LB@@LB@Energy -4.94 kcal/mol@LB@Hybridization Energy -10.6989 kcal/mol@LB@Unfolding Energy - mRNA 2.59286 kcal/mol@LB@Unfolding Energy - sRNA 3.16562 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 52 -- 60@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 52 -- 58@LB@ |
161 |
0.01751 |
0.3504 |
b3394 |
hofN |
-4.92 |
0.333288 |
275 -- 286 |
18 -- 29 |
DNA catabolic putative fimbrial assembly protein |
|
_____________274__________287\n_____________|____________|\n5'-UGG...CUGAU____________UCUGC...CCG-3'\n______________GUUCGUUGCGCC\n______________:||||||:|:||\n______________UAAGCAAUGUGG\n3'-UUU...UUUUU____________UCCUU...CAA-5'\n_____________|____________|\n_____________30___________17\n |
275 -- 281 |
23 -- 29 |
-17.9024 kcal/mol |
4.53191 kcal/mol |
8.4513 kcal/mol |
274 287@LB@ | |@LB@5'-UGG...CUGAU UCUGC...CCG-3'@LB@ GUUCGUUGCGCC@LB@ :||||||:|:||@LB@ UAAGCAAUGUGG@LB@3'-UUU...UUUUU UCCUU...CAA-5'@LB@ | |@LB@ 30 17@LB@@LB@@LB@Energy -4.92 kcal/mol@LB@Hybridization Energy -17.9024 kcal/mol@LB@Unfolding Energy - mRNA 4.53191 kcal/mol@LB@Unfolding Energy - sRNA 8.4513 kcal/mol@LB@@LB@Position - mRNA 275 -- 286@LB@Position - sRNA 18 -- 29@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 23 -- 29@LB@ |
158 |
0.01725 |
0.3504 |
b3857 |
mobA |
-11.09 |
0.007545 |
184 -- 212 |
5 -- 35 |
molybdopterin-guanine dinucleotide synthase |
|
_____________183_____________________________213\n_____________|_______________________________|\n5'-UCC...CACAA_______GG___________U__________ACGAC...AAC-3'\n______________UAAAAGA__CG__AUAUCGG_GAAUCUGAUG\n______________|||||:|__||__|:|:|:|_:|||||||||\n______________AUUUUUU__GC__UGUGGUC_UUUAGACUAC\n3'-UUU...CGUGA_______AA__AA_______C__________ACAA-5'\n_____________|_______________________________|\n_____________36______________________________4\n |
184 -- 190 |
29 -- 35 |
-25.0811 kcal/mol |
5.24608 kcal/mol |
8.74745 kcal/mol |
183 213@LB@ | |@LB@5'-UCC...CACAA GG U ACGAC...AAC-3'@LB@ UAAAAGA CG AUAUCGG GAAUCUGAUG@LB@ |||||:| || |:|:|:| :|||||||||@LB@ AUUUUUU GC UGUGGUC UUUAGACUAC@LB@3'-UUU...CGUGA AA AA C ACAA-5'@LB@ | |@LB@ 36 4@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -25.0811 kcal/mol@LB@Unfolding Energy - mRNA 5.24608 kcal/mol@LB@Unfolding Energy - sRNA 8.74745 kcal/mol@LB@@LB@Position - mRNA 184 -- 212@LB@Position - sRNA 5 -- 35@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 29 -- 35@LB@ |