88 |
0.005527 |
0.2147 |
b3525 |
yhjH |
-13.65 |
0.056862 |
190 -- 212 |
5 -- 23 |
cyclic-di-GMP phosphodiesterase FlhDC-regulated |
|
_____________189_____________________213\n_____________|_______________________|\n5'-UUA...ACACA_______UUU__UGAU_______GUUAU...CCU-3'\n______________GGACAUC___GA____AAGGCAG\n______________|||||||___||____||:||||\n______________CCUGUAG___CU____UUUCGUC\n3'-UUU...UUACC_______UUU_____________ACCG-5'\n_____________|_______________________|\n_____________24______________________4\n |
206 -- 212 |
5 -- 11 |
-19.0549 kcal/mol |
3.83037 kcal/mol |
1.57523 kcal/mol |
189 213@LB@ | |@LB@5'-UUA...ACACA UUU UGAU GUUAU...CCU-3'@LB@ GGACAUC GA AAGGCAG@LB@ ||||||| || ||:||||@LB@ CCUGUAG CU UUUCGUC@LB@3'-UUU...UUACC UUU ACCG-5'@LB@ | |@LB@ 24 4@LB@@LB@@LB@Energy -13.65 kcal/mol@LB@Hybridization Energy -19.0549 kcal/mol@LB@Unfolding Energy - mRNA 3.83037 kcal/mol@LB@Unfolding Energy - sRNA 1.57523 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 5 -- 23@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 5 -- 11@LB@ |
125 |
0.009022 |
0.2491 |
b0658 |
ybeX |
-16.01 |
0.015431 |
14 -- 34 |
5 -- 21 |
putative ion transport |
|
_____________13____________________35\n_____________|_____________________|\n5'-UUA...CGAUC__________UGAC_______AAGAA...ACC-3'\n______________ACAUCGAAGA____GAAGCAG\n______________|||||:||||____:||||||\n______________UGUAGUUUCU____UUUCGUC\n3'-UUU...ACCCC_____________________ACCG-5'\n_____________|_____________________|\n_____________22____________________4\n |
28 -- 34 |
5 -- 11 |
-20.2475 kcal/mol |
2.73159 kcal/mol |
1.5073 kcal/mol |
13 35@LB@ | |@LB@5'-UUA...CGAUC UGAC AAGAA...ACC-3'@LB@ ACAUCGAAGA GAAGCAG@LB@ |||||:|||| :||||||@LB@ UGUAGUUUCU UUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -16.01 kcal/mol@LB@Hybridization Energy -20.2475 kcal/mol@LB@Unfolding Energy - mRNA 2.73159 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 14 -- 34@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 5 -- 11@LB@ |
135 |
0.009724 |
0.2504 |
b1387 |
paaZ |
-12.57 |
0.095542 |
174 -- 198 |
5 -- 30 |
oxepin-CoA hydrolase and 3-oxo-5 6-dehydrosuberyl-CoA semialdehyde dehydrogenase |
|
_____________173_________________________199\n_____________|___________________________|\n5'-UAA...CAACA______U_AA_____U___________CGAUG...AAG-3'\n______________GAAAUG_G__ACAUC___GGAGAGUAG\n______________:|||||_|__|||||___|:|:||:||\n______________UUUUAC_C__UGUAG___CUUUUCGUC\n3'-UUU...AGGUG________CC_____UUU_________ACCG-5'\n_____________|___________________________|\n_____________31__________________________4\n |
192 -- 198 |
5 -- 11 |
-19.0129 kcal/mol |
3.93627 kcal/mol |
2.50278 kcal/mol |
173 199@LB@ | |@LB@5'-UAA...CAACA U AA U CGAUG...AAG-3'@LB@ GAAAUG G ACAUC GGAGAGUAG@LB@ :||||| | ||||| |:|:||:||@LB@ UUUUAC C UGUAG CUUUUCGUC@LB@3'-UUU...AGGUG CC UUU ACCG-5'@LB@ | |@LB@ 31 4@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -19.0129 kcal/mol@LB@Unfolding Energy - mRNA 3.93627 kcal/mol@LB@Unfolding Energy - sRNA 2.50278 kcal/mol@LB@@LB@Position - mRNA 174 -- 198@LB@Position - sRNA 5 -- 30@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
142 |
0.01047 |
0.2504 |
b3998 |
nfi |
-11.68 |
0.142276 |
34 -- 51 |
5 -- 21 |
endonuclease V; deoxyinosine 3' endonuclease |
|
_____________33_________________52\n_____________|__________________|\n5'-UGG...UGCCC_________A________CGACU...GAG-3'\n______________GCAUUGAAG_AGAAGUAG\n______________:|||::|||_|:|||:||\n______________UGUAGUUUC_UUUUCGUC\n3'-UUU...ACCCC__________________ACCG-5'\n_____________|__________________|\n_____________22_________________4\n |
45 -- 51 |
5 -- 11 |
-17.0993 kcal/mol |
3.91468 kcal/mol |
1.5073 kcal/mol |
33 52@LB@ | |@LB@5'-UGG...UGCCC A CGACU...GAG-3'@LB@ GCAUUGAAG AGAAGUAG@LB@ :|||::||| |:|||:||@LB@ UGUAGUUUC UUUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -11.68 kcal/mol@LB@Hybridization Energy -17.0993 kcal/mol@LB@Unfolding Energy - mRNA 3.91468 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 34 -- 51@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 5 -- 11@LB@ |
175 |
0.01275 |
0.2504 |
b3057 |
bacA |
-10.43 |
0.234919 |
238 -- 261 |
5 -- 26 |
undecaprenyl pyrophosphate phosphatase |
|
_____________237______________________262\n_____________|________________________|\n5'-UUC...AAUAU____U_UG_________UU_A___AAUUU...UUG-3'\n______________UGGG_G__GUCGAAGGA__G_CAG\n______________||||_|__:||:|||:|__|_|||\n______________ACCC_C__UAGUUUCUU__C_GUC\n3'-UUU...GUUUU______UG_________UU_____ACCG-5'\n_____________|________________________|\n_____________27_______________________4\n |
248 -- 254 |
11 -- 17 |
-20.3624 kcal/mol |
7.43347 kcal/mol |
2.50108 kcal/mol |
237 262@LB@ | |@LB@5'-UUC...AAUAU U UG UU A AAUUU...UUG-3'@LB@ UGGG G GUCGAAGGA G CAG@LB@ |||| | :||:|||:| | |||@LB@ ACCC C UAGUUUCUU C GUC@LB@3'-UUU...GUUUU UG UU ACCG-5'@LB@ | |@LB@ 27 4@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -20.3624 kcal/mol@LB@Unfolding Energy - mRNA 7.43347 kcal/mol@LB@Unfolding Energy - sRNA 2.50108 kcal/mol@LB@@LB@Position - mRNA 238 -- 261@LB@Position - sRNA 5 -- 26@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 11 -- 17@LB@ |
177 |
0.01288 |
0.2504 |
b3455 |
livG |
-10.61 |
0.218983 |
178 -- 198 |
5 -- 24 |
branched-chain amino acid ABC transporter ATPase |
|
_____________177___________________199\n_____________|_____________________|\n5'-AUG...AAAAC__C___GCG____________GCAUG...UCG-3'\n______________GG_GCA___AAAGGAGAGCAG\n______________||_:||___||||:|:|||||\n______________CC_UGU___UUUCUUUUCGUC\n3'-UUU...UUUAC__C___AG_____________ACCG-5'\n_____________|_____________________|\n_____________25____________________4\n |
192 -- 198 |
5 -- 11 |
-19.5574 kcal/mol |
6.51739 kcal/mol |
2.42705 kcal/mol |
177 199@LB@ | |@LB@5'-AUG...AAAAC C GCG GCAUG...UCG-3'@LB@ GG GCA AAAGGAGAGCAG@LB@ || :|| ||||:|:|||||@LB@ CC UGU UUUCUUUUCGUC@LB@3'-UUU...UUUAC C AG ACCG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -19.5574 kcal/mol@LB@Unfolding Energy - mRNA 6.51739 kcal/mol@LB@Unfolding Energy - sRNA 2.42705 kcal/mol@LB@@LB@Position - mRNA 178 -- 198@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
11 |
0.0003708 |
0.1087 |
b4201 |
priB |
-14.90 |
0.029310 |
176 -- 193 |
6 -- 26 |
primosomal protein N |
|
_____________175___________________194\n_____________|_____________________|\n5'-AGG...GAAGC__________U__________AUUUC...AUC-3'\n______________UGGGGAU_UC___GAAGAGUA\n______________||||||:_||___|||:||:|\n______________ACCCCUG_AG___CUUUUCGU\n3'-UUU...GUUUU_______U__UUU________CACCG-5'\n_____________|_____________________|\n_____________27____________________5\n |
187 -- 193 |
6 -- 12 |
-19.0189 kcal/mol |
3.41067 kcal/mol |
0.706421 kcal/mol |
175 194@LB@ | |@LB@5'-AGG...GAAGC U AUUUC...AUC-3'@LB@ UGGGGAU UC GAAGAGUA@LB@ ||||||: || |||:||:|@LB@ ACCCCUG AG CUUUUCGU@LB@3'-UUU...GUUUU U UUU CACCG-5'@LB@ | |@LB@ 27 5@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -19.0189 kcal/mol@LB@Unfolding Energy - mRNA 3.41067 kcal/mol@LB@Unfolding Energy - sRNA 0.706421 kcal/mol@LB@@LB@Position - mRNA 176 -- 193@LB@Position - sRNA 6 -- 26@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 6 -- 12@LB@ |
30 |
0.001442 |
0.1635 |
b3458 |
livK |
-12.84 |
0.084462 |
180 -- 215 |
6 -- 33 |
leucine transporter subunit |
|
_____________179___________________________________216\n_____________|_____________________________________|\n5'-UGU...AACAU______________UUUUGACU__G___C____U___AAAAC...CGA-3'\n______________CAC_GAAUGGGGAU________AU_AAA_GGAA_GCG\n______________|||_:||||||||:________||_|||_|:||_||:\n______________GUG_UUUACCCCUG________UA_UUU_CUUU_CGU\n3'-UUU...CCGAG___U____________________G________U___CACCG-5'\n_____________|_____________________________________|\n_____________34____________________________________5\n |
186 -- 192 |
20 -- 26 |
-21.4141 kcal/mol |
5.49822 kcal/mol |
3.07787 kcal/mol |
179 216@LB@ | |@LB@5'-UGU...AACAU UUUUGACU G C U AAAAC...CGA-3'@LB@ CAC GAAUGGGGAU AU AAA GGAA GCG@LB@ ||| :||||||||: || ||| |:|| ||:@LB@ GUG UUUACCCCUG UA UUU CUUU CGU@LB@3'-UUU...CCGAG U G U CACCG-5'@LB@ | |@LB@ 34 5@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -21.4141 kcal/mol@LB@Unfolding Energy - mRNA 5.49822 kcal/mol@LB@Unfolding Energy - sRNA 3.07787 kcal/mol@LB@@LB@Position - mRNA 180 -- 215@LB@Position - sRNA 6 -- 33@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 20 -- 26@LB@ |
32 |
0.001499 |
0.1635 |
b0661 |
miaB |
-12.88 |
0.082685 |
213 -- 250 |
6 -- 36 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________212____________________________________251\n_____________|______________________________________|\n5'-CGC...AAAAA_______UU_AAACC_____C_______U___C_____CGAUU...AAC-3'\n______________CUCCAUA__A_____UGGGG_UGUCAGA_GAA_GAGUA\n______________|||||:|__|_____|||||_::|||:|_|||_:||:|\n______________GAGGUGU__U_____ACCCC_GUAGUUU_CUU_UUCGU\n3'-UUU...UACCC_______UU___________U_________________CACCG-5'\n_____________|______________________________________|\n_____________37_____________________________________5\n |
234 -- 240 |
14 -- 20 |
-26.1374 kcal/mol |
6.57825 kcal/mol |
6.67617 kcal/mol |
212 251@LB@ | |@LB@5'-CGC...AAAAA UU AAACC C U C CGAUU...AAC-3'@LB@ CUCCAUA A UGGGG UGUCAGA GAA GAGUA@LB@ |||||:| | ||||| ::|||:| ||| :||:|@LB@ GAGGUGU U ACCCC GUAGUUU CUU UUCGU@LB@3'-UUU...UACCC UU U CACCG-5'@LB@ | |@LB@ 37 5@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -26.1374 kcal/mol@LB@Unfolding Energy - mRNA 6.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.67617 kcal/mol@LB@@LB@Position - mRNA 213 -- 250@LB@Position - sRNA 6 -- 36@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 14 -- 20@LB@ |
72 |
0.004007 |
0.1953 |
b2175 |
mepS |
-13.55 |
0.059767 |
177 -- 194 |
6 -- 23 |
murein DD-endopeptidase space-maker hydrolase mutational suppressor of prc thermosensitivity outer membrane lipoprotein weak murein LD-carboxypeptidase |
|
_____________176________________195\n_____________|__________________|\n5'-CAA...GUUAA____U__________A__AACAA...CAA-3'\n______________GGAC_UCAAGGGAAA_CA\n______________||||_||||:|:|||_||\n______________CCUG_AGUUUCUUUU_GU\n3'-UUU...UUACC____U__________C__CACCG-5'\n_____________|__________________|\n_____________24_________________5\n |
185 -- 191 |
9 -- 15 |
-17.1277 kcal/mol |
2.97845 kcal/mol |
0.599171 kcal/mol |
176 195@LB@ | |@LB@5'-CAA...GUUAA U A AACAA...CAA-3'@LB@ GGAC UCAAGGGAAA CA@LB@ |||| ||||:|:||| ||@LB@ CCUG AGUUUCUUUU GU@LB@3'-UUU...UUACC U C CACCG-5'@LB@ | |@LB@ 24 5@LB@@LB@@LB@Energy -13.55 kcal/mol@LB@Hybridization Energy -17.1277 kcal/mol@LB@Unfolding Energy - mRNA 2.97845 kcal/mol@LB@Unfolding Energy - sRNA 0.599171 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 6 -- 23@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 9 -- 15@LB@ |