69 |
0.001222 |
0.06239 |
b0699 |
ybfA |
-13.19 |
0.016050 |
183 -- 205 |
37 -- 62 |
DUF2517 family protein |
|
_____________182________________________206\n_____________|__________________________|\n5'-AUG...AGAUA____________AAA___________ACUCU...GGA-3'\n______________CAAAAGGGGGAG______AGUAUGGA\n______________|||||::||:||______|:||||||\n______________GUUUUUUCCUUC______UUAUACCU\n3'-UUU...AUUAA____________AUUCUG________CGCGU...ACG-5'\n_____________|__________________________|\n_____________63_________________________36\n |
199 -- 205 |
37 -- 43 |
-21.7 kcal/mol |
3.27833 kcal/mol |
5.2343 kcal/mol |
182 206@LB@ | |@LB@5'-AUG...AGAUA AAA ACUCU...GGA-3'@LB@ CAAAAGGGGGAG AGUAUGGA@LB@ |||||::||:|| |:||||||@LB@ GUUUUUUCCUUC UUAUACCU@LB@3'-UUU...AUUAA AUUCUG CGCGU...ACG-5'@LB@ | |@LB@ 63 36@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -21.7 kcal/mol@LB@Unfolding Energy - mRNA 3.27833 kcal/mol@LB@Unfolding Energy - sRNA 5.2343 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 37 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 37 -- 43@LB@ |
132 |
0.004965 |
0.1313 |
b0876 |
ybjD |
-10.35 |
0.091015 |
20 -- 74 |
49 -- 93 |
putative OLD family ATP-dependent endonuclease; DUF2813 family protein |
|
_____________19______________________________________________________75\n_____________|_______________________________________________________|\n5'-CGU...AUUUA__A___U_____U___AUUU_____UUUU_____ACUUA____C___________UAACG...GGG-3'\n______________UC_UGC_AAUUA_UUG____UGUUG____UGCAG_____UCAG_AAGAGGGAGUA\n______________||_|:|_|||:|_|||____||:|:____|||||_____|||:_||:|||:||||\n______________AG_AUG_UUAGU_AAC____ACGAU____ACGUC_____AGUU_UUUUCCUUCAU\n3'-UUU...GCCGC__C___C_____U_____________________AUUA_________________UCUGU...ACG-5'\n_____________|_______________________________________________________|\n_____________94______________________________________________________48\n |
68 -- 74 |
49 -- 55 |
-28.5607 kcal/mol |
13.348 kcal/mol |
4.86987 kcal/mol |
19 75@LB@ | |@LB@5'-CGU...AUUUA A U U AUUU UUUU ACUUA C UAACG...GGG-3'@LB@ UC UGC AAUUA UUG UGUUG UGCAG UCAG AAGAGGGAGUA@LB@ || |:| |||:| ||| ||:|: ||||| |||: ||:|||:||||@LB@ AG AUG UUAGU AAC ACGAU ACGUC AGUU UUUUCCUUCAU@LB@3'-UUU...GCCGC C C U AUUA UCUGU...ACG-5'@LB@ | |@LB@ 94 48@LB@@LB@@LB@Energy -10.35 kcal/mol@LB@Hybridization Energy -28.5607 kcal/mol@LB@Unfolding Energy - mRNA 13.348 kcal/mol@LB@Unfolding Energy - sRNA 4.86987 kcal/mol@LB@@LB@Position - mRNA 20 -- 74@LB@Position - sRNA 49 -- 93@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 49 -- 55@LB@ |
84 |
0.001972 |
0.08273 |
b0968 |
yccX |
-8.34 |
0.253881 |
183 -- 226 |
2 -- 49 |
weak acylphosphatase |
|
_____________182_________________________________________________227\n_____________|___________________________________________________|\n5'-GGC...CAUUA_______GGA_____A________G_AA__C___________AA_______GGUUU...CCG-3'\n______________AGGAUAA____GAGC_GCAAUGUC_A__GU_______UGCAU__UUGCCUG\n______________|:||:||____||||_||||:|:|_|__|:_______|||||__|::||||\n______________UUCUGUU____CUCG_CGUUGCGG_U__CG_______ACGUA__AGUGGAC\n3'-UUU...CUUCA_______AUAC_____________G_AG__AACUGCA______________G-5'\n_____________|___________________________________________________|\n_____________50__________________________________________________1\n |
220 -- 226 |
2 -- 8 |
-35.2137 kcal/mol |
10.0937 kcal/mol |
16.7804 kcal/mol |
182 227@LB@ | |@LB@5'-GGC...CAUUA GGA A G AA C AA GGUUU...CCG-3'@LB@ AGGAUAA GAGC GCAAUGUC A GU UGCAU UUGCCUG@LB@ |:||:|| |||| ||||:|:| | |: ||||| |::||||@LB@ UUCUGUU CUCG CGUUGCGG U CG ACGUA AGUGGAC@LB@3'-UUU...CUUCA AUAC G AG AACUGCA G-5'@LB@ | |@LB@ 50 1@LB@@LB@@LB@Energy -8.34 kcal/mol@LB@Hybridization Energy -35.2137 kcal/mol@LB@Unfolding Energy - mRNA 10.0937 kcal/mol@LB@Unfolding Energy - sRNA 16.7804 kcal/mol@LB@@LB@Position - mRNA 183 -- 226@LB@Position - sRNA 2 -- 49@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 2 -- 8@LB@ |
174 |
0.007207 |
0.145 |
b1034 |
ycdX |
-9.36 |
0.154134 |
94 -- 120 |
35 -- 63 |
alkaline phosphatase |
|
_____________93_____________________________121\n_____________|______________________________|\n5'-GGC...CCAGC__________________G___C__C____AAGUC...AAC-3'\n______________UCGAAAAAGGG___GAGA_GGU_UG_GGGC\n______________||:|||||||:___:|||_::|_||_|:||\n______________AGUUUUUUCCU___UUCU_UUA_AC_CUCG\n3'-UUU...CAUUA___________UCA____G___U_______CGUUG...ACG-5'\n_____________|______________________________|\n_____________64_____________________________34\n |
98 -- 104 |
53 -- 59 |
-21.9855 kcal/mol |
6.52956 kcal/mol |
6.08557 kcal/mol |
93 121@LB@ | |@LB@5'-GGC...CCAGC G C C AAGUC...AAC-3'@LB@ UCGAAAAAGGG GAGA GGU UG GGGC@LB@ ||:|||||||: :||| ::| || |:||@LB@ AGUUUUUUCCU UUCU UUA AC CUCG@LB@3'-UUU...CAUUA UCA G U CGUUG...ACG-5'@LB@ | |@LB@ 64 34@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -21.9855 kcal/mol@LB@Unfolding Energy - mRNA 6.52956 kcal/mol@LB@Unfolding Energy - sRNA 6.08557 kcal/mol@LB@@LB@Position - mRNA 94 -- 120@LB@Position - sRNA 35 -- 63@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 53 -- 59@LB@ |
194 |
0.008684 |
0.1548 |
b1242 |
ychE |
-7.20 |
0.413978 |
105 -- 113 |
48 -- 56 |
UPF0056 family inner membrane protein |
|
_____________104_______114\n_____________|_________|\n5'-CAU...UAGUU_________AAAAU...GCA-3'\n______________AGGAGGUGA\n______________||||:||:|\n______________UCCUUCAUU\n3'-UUU...UUUUU_________CUGUU...ACG-5'\n_____________|_________|\n_____________57________47\n |
107 -- 113 |
48 -- 54 |
-10.6218 kcal/mol |
2.70901 kcal/mol |
0.718267 kcal/mol |
104 114@LB@ | |@LB@5'-CAU...UAGUU AAAAU...GCA-3'@LB@ AGGAGGUGA@LB@ ||||:||:|@LB@ UCCUUCAUU@LB@3'-UUU...UUUUU CUGUU...ACG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -10.6218 kcal/mol@LB@Unfolding Energy - mRNA 2.70901 kcal/mol@LB@Unfolding Energy - sRNA 0.718267 kcal/mol@LB@@LB@Position - mRNA 105 -- 113@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 48 -- 54@LB@ |
102 |
0.003332 |
0.1114 |
b1279 |
yciS |
-9.50 |
0.143375 |
3 -- 9 |
1 -- 7 |
DUF1049 family inner membrane protein function unknown |
|
_____________2_______10\n_____________|_______|\n_________5'-AC_______GGAAG...UGU-3'\n______________CACCUGC\n______________|||||||\n______________GUGGACG\n3'-UUU...CGUAA_______-5'\n_____________|______|\n_____________8______1\n |
3 -- 9 |
1 -- 7 |
-13.2462 kcal/mol |
1.40693 kcal/mol |
2.34039 kcal/mol |
2 10@LB@ | |@LB@ 5'-AC GGAAG...UGU-3'@LB@ CACCUGC@LB@ |||||||@LB@ GUGGACG@LB@3'-UUU...CGUAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -13.2462 kcal/mol@LB@Unfolding Energy - mRNA 1.40693 kcal/mol@LB@Unfolding Energy - sRNA 2.34039 kcal/mol@LB@@LB@Position - mRNA 3 -- 9@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 1 -- 7@LB@ |
187 |
0.008226 |
0.1545 |
b1446 |
ydcY |
-8.50 |
0.236240 |
3 -- 9 |
2 -- 8 |
DUF2526 family protein |
|
_____________2_______10\n_____________|_______|\n_________5'-UA_______GUUUC...ACG-3'\n______________UCACCUG\n______________|||||||\n______________AGUGGAC\n3'-UUU...ACGUA_______G-5'\n_____________|_______|\n_____________9_______1\n |
3 -- 9 |
2 -- 8 |
-11.529 kcal/mol |
0.673638 kcal/mol |
2.36182 kcal/mol |
2 10@LB@ | |@LB@ 5'-UA GUUUC...ACG-3'@LB@ UCACCUG@LB@ |||||||@LB@ AGUGGAC@LB@3'-UUU...ACGUA G-5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -11.529 kcal/mol@LB@Unfolding Energy - mRNA 0.673638 kcal/mol@LB@Unfolding Energy - sRNA 2.36182 kcal/mol@LB@@LB@Position - mRNA 3 -- 9@LB@Position - sRNA 2 -- 8@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 2 -- 8@LB@ |
112 |
0.003634 |
0.1131 |
b1473 |
yddG |
-8.08 |
0.286569 |
177 -- 226 |
24 -- 55 |
aromatic amino acid exporter |
|
_____________176________________________________________________227\n_____________|__________________________________________________|\n5'-GCG...UUAAC__C___A_______AACA_C____AUGACACGACAAAAA___________AGGGC...CGG-3'\n______________GG_AAG_GAGACAA____G_GAGC_______________GCAACGCUCAU\n______________||_|||_:||||||____|_||||_______________|||||||:|||\n______________CC_UUC_UUCUGUU____C_CUCG_______________CGUUGCGGGUA\n3'-UUU...UUUUU______A_______AUA_________________________________GCGAA...ACG-5'\n_____________|__________________________________________________|\n_____________56_________________________________________________23\n |
216 -- 222 |
28 -- 34 |
-30.4707 kcal/mol |
9.38627 kcal/mol |
13.0079 kcal/mol |
176 227@LB@ | |@LB@5'-GCG...UUAAC C A AACA C AUGACACGACAAAAA AGGGC...CGG-3'@LB@ GG AAG GAGACAA G GAGC GCAACGCUCAU@LB@ || ||| :|||||| | |||| |||||||:|||@LB@ CC UUC UUCUGUU C CUCG CGUUGCGGGUA@LB@3'-UUU...UUUUU A AUA GCGAA...ACG-5'@LB@ | |@LB@ 56 23@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -30.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.38627 kcal/mol@LB@Unfolding Energy - sRNA 13.0079 kcal/mol@LB@@LB@Position - mRNA 177 -- 226@LB@Position - sRNA 24 -- 55@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 28 -- 34@LB@ |
96 |
0.002937 |
0.1078 |
b1539 |
ydfG |
-11.63 |
0.043083 |
159 -- 205 |
42 -- 78 |
NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase |
|
_____________158_____________________________________________206\n_____________|_______________________________________________|\n5'-GAU...AUCCC_________UAUUGACACA_____GCGUU_____AC___________CGUUU...GCC-3'\n______________GUGCUAUGU__________CAAAA_____GAGGA__AGUGAGAUGAU\n______________||||||||:__________|||||_____:||||__|||:|||::||\n______________CACGAUACG__________GUUUU_____UUCCU__UCAUUCUGUUA\n3'-UUU...GUUAA_________UCAUUAA_______________________________UACCU...ACG-5'\n_____________|_______________________________________________|\n_____________79______________________________________________41\n |
199 -- 205 |
42 -- 48 |
-28.6775 kcal/mol |
11.4217 kcal/mol |
5.62659 kcal/mol |
158 206@LB@ | |@LB@5'-GAU...AUCCC UAUUGACACA GCGUU AC CGUUU...GCC-3'@LB@ GUGCUAUGU CAAAA GAGGA AGUGAGAUGAU@LB@ ||||||||: ||||| :|||| |||:|||::||@LB@ CACGAUACG GUUUU UUCCU UCAUUCUGUUA@LB@3'-UUU...GUUAA UCAUUAA UACCU...ACG-5'@LB@ | |@LB@ 79 41@LB@@LB@@LB@Energy -11.63 kcal/mol@LB@Hybridization Energy -28.6775 kcal/mol@LB@Unfolding Energy - mRNA 11.4217 kcal/mol@LB@Unfolding Energy - sRNA 5.62659 kcal/mol@LB@@LB@Position - mRNA 159 -- 205@LB@Position - sRNA 42 -- 78@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 42 -- 48@LB@ |
129 |
0.00462 |
0.126 |
b1795 |
yeaQ |
-13.29 |
0.014930 |
139 -- 150 |
70 -- 81 |
UPF0410 family protein |
|
_____________138__________151\n_____________|____________|\n5'-AUA...CCGAU____________UUUUU...UCC-3'\n______________GUUGUGCUAUGC\n______________:|||||||||||\n______________UAACACGAUACG\n3'-UUU...UUAGU____________UCAUU...ACG-5'\n_____________|____________|\n_____________82___________69\n |
144 -- 150 |
70 -- 76 |
-18.6071 kcal/mol |
3.49189 kcal/mol |
1.8201 kcal/mol |
138 151@LB@ | |@LB@5'-AUA...CCGAU UUUUU...UCC-3'@LB@ GUUGUGCUAUGC@LB@ :|||||||||||@LB@ UAACACGAUACG@LB@3'-UUU...UUAGU UCAUU...ACG-5'@LB@ | |@LB@ 82 69@LB@@LB@@LB@Energy -13.29 kcal/mol@LB@Hybridization Energy -18.6071 kcal/mol@LB@Unfolding Energy - mRNA 3.49189 kcal/mol@LB@Unfolding Energy - sRNA 1.8201 kcal/mol@LB@@LB@Position - mRNA 139 -- 150@LB@Position - sRNA 70 -- 81@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 70 -- 76@LB@ |