173 |
0.02087 |
0.4033 |
b2239 |
glpQ |
-12.95 |
0.026326 |
256 -- 274 |
41 -- 66 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________255________________________275\n_____________|__________________________|\n5'-CGG...AGUCA__________________________GGCGG...UCA-3'\n______________UGGGAA_______GCAGUGCAAUGGC\n______________|||:||_______|||:|||||||||\n______________ACCUUU_______CGUUACGUUACCG\n3'-UUU...AUACA______UAGUCAC_____________GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
268 -- 274 |
41 -- 47 |
-26.6029 kcal/mol |
7.82977 kcal/mol |
5.82355 kcal/mol |
255 275@LB@ | |@LB@5'-CGG...AGUCA GGCGG...UCA-3'@LB@ UGGGAA GCAGUGCAAUGGC@LB@ |||:|| |||:|||||||||@LB@ ACCUUU CGUUACGUUACCG@LB@3'-UUU...AUACA UAGUCAC GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -26.6029 kcal/mol@LB@Unfolding Energy - mRNA 7.82977 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 256 -- 274@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 41 -- 47@LB@ |
124 |
0.01277 |
0.3462 |
b2812 |
tcdA |
-10.63 |
0.089790 |
208 -- 228 |
41 -- 66 |
tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
|
_____________207________________________229\n_____________|__________________________|\n5'-GUG...GUCUG___U______________________GUCAG...UUU-3'\n______________UGG__AAUUAGUG___AUGC_AUGGC\n______________|||__|||:||||___||||_|||||\n______________ACC__UUAGUCAC___UACG_UACCG\n3'-UUU...AUACA___UU________CGU____U_____GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
213 -- 219 |
54 -- 60 |
-21.2123 kcal/mol |
4.76037 kcal/mol |
5.82355 kcal/mol |
207 229@LB@ | |@LB@5'-GUG...GUCUG U GUCAG...UUU-3'@LB@ UGG AAUUAGUG AUGC AUGGC@LB@ ||| |||:|||| |||| |||||@LB@ ACC UUAGUCAC UACG UACCG@LB@3'-UUU...AUACA UU CGU U GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -21.2123 kcal/mol@LB@Unfolding Energy - mRNA 4.76037 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 208 -- 228@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 54 -- 60@LB@ |
195 |
0.02483 |
0.4256 |
b2905 |
gcvT |
-11.07 |
0.071827 |
75 -- 92 |
41 -- 59 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________74__________________93\n_____________|___________________|\n5'-CUG...CUGUU_____________UCA___AAAAG...AAA-3'\n______________UCGGUGGUAA_GU___GGC\n______________||:||||:||_|:___|||\n______________AGUCACCGUU_CG___CCG\n3'-UUU...CUUUU__________A__UUA___GGUUG...UUG-5'\n_____________|___________________|\n_____________60__________________40\n |
78 -- 84 |
50 -- 56 |
-19.3336 kcal/mol |
3.99003 kcal/mol |
4.26967 kcal/mol |
74 93@LB@ | |@LB@5'-CUG...CUGUU UCA AAAAG...AAA-3'@LB@ UCGGUGGUAA GU GGC@LB@ ||:||||:|| |: |||@LB@ AGUCACCGUU CG CCG@LB@3'-UUU...CUUUU A UUA GGUUG...UUG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -19.3336 kcal/mol@LB@Unfolding Energy - mRNA 3.99003 kcal/mol@LB@Unfolding Energy - sRNA 4.26967 kcal/mol@LB@@LB@Position - mRNA 75 -- 92@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 50 -- 56@LB@ |
46 |
0.003168 |
0.2306 |
b3066 |
dnaG |
-7.10 |
0.407270 |
188 -- 205 |
41 -- 63 |
DNA primase |
|
_____________187_____________________206\n_____________|_______________________|\n5'-ACC...UGCUA____________CU_________UGGAC...GCA-3'\n______________AAAAUCGG_GGC______AUGGC\n______________||||||:|_|||______|||||\n______________UUUUAGUC_CCG______UACCG\n3'-UUU...CAACC________A___UUACGU_____GGUUG...UUG-5'\n_____________|_______________________|\n_____________64______________________40\n |
189 -- 195 |
56 -- 62 |
-16.4791 kcal/mol |
5.10709 kcal/mol |
4.27657 kcal/mol |
187 206@LB@ | |@LB@5'-ACC...UGCUA CU UGGAC...GCA-3'@LB@ AAAAUCGG GGC AUGGC@LB@ ||||||:| ||| |||||@LB@ UUUUAGUC CCG UACCG@LB@3'-UUU...CAACC A UUACGU GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -16.4791 kcal/mol@LB@Unfolding Energy - mRNA 5.10709 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 56 -- 62@LB@ |
197 |
0.02537 |
0.4256 |
b3317 |
rplB |
-11.01 |
0.074049 |
182 -- 205 |
41 -- 62 |
50S ribosomal subunit protein L2 |
|
_____________181______________________206\n_____________|________________________|\n5'-GCA...UGAGU_______AG_A_____A_______AGUUG...UGC-3'\n______________AAGUCGG__G_GUAAU_CAAUGGC\n______________||:||:|__|_|:|||_|||||||\n______________UUUAGUC__C_CGUUA_GUUACCG\n3'-UUU...AACCU_______A________C_______GGUUG...UUG-5'\n_____________|________________________|\n_____________63_______________________40\n |
199 -- 205 |
41 -- 47 |
-19.8959 kcal/mol |
4.6063 kcal/mol |
4.27585 kcal/mol |
181 206@LB@ | |@LB@5'-GCA...UGAGU AG A A AGUUG...UGC-3'@LB@ AAGUCGG G GUAAU CAAUGGC@LB@ ||:||:| | |:||| |||||||@LB@ UUUAGUC C CGUUA GUUACCG@LB@3'-UUU...AACCU A C GGUUG...UUG-5'@LB@ | |@LB@ 63 40@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -19.8959 kcal/mol@LB@Unfolding Energy - mRNA 4.6063 kcal/mol@LB@Unfolding Energy - sRNA 4.27585 kcal/mol@LB@@LB@Position - mRNA 182 -- 205@LB@Position - sRNA 41 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
91 |
0.007817 |
0.2889 |
b3380 |
yhfW |
-10.82 |
0.081759 |
179 -- 205 |
41 -- 67 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________178_________________________206\n_____________|___________________________|\n5'-CUC...CAGUC_______C__UC___G__C________GCGAU...GUG-3'\n______________UUGGAAA_UC__UGG_GG_GUAAUGGC\n______________|||||||_||__|||_::_|:||||||\n______________AACCUUU_AG__ACC_UU_CGUUACCG\n3'-UUU...UAUAC_______U__UC___G__A________GGUUG...UUG-5'\n_____________|___________________________|\n_____________68__________________________40\n |
199 -- 205 |
41 -- 47 |
-26.7792 kcal/mol |
10.1319 kcal/mol |
5.83043 kcal/mol |
178 206@LB@ | |@LB@5'-CUC...CAGUC C UC G C GCGAU...GUG-3'@LB@ UUGGAAA UC UGG GG GUAAUGGC@LB@ ||||||| || ||| :: |:||||||@LB@ AACCUUU AG ACC UU CGUUACCG@LB@3'-UUU...UAUAC U UC G A GGUUG...UUG-5'@LB@ | |@LB@ 68 40@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -26.7792 kcal/mol@LB@Unfolding Energy - mRNA 10.1319 kcal/mol@LB@Unfolding Energy - sRNA 5.83043 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 41 -- 67@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
36 |
0.002273 |
0.2088 |
b4138 |
dcuA |
-11.14 |
0.069498 |
259 -- 284 |
41 -- 65 |
C4-dicarboxylate antiporter |
|
_____________258__________________________285\n_____________|____________________________|\n5'-AAC...AUUGG_______A___AUU___UU_________GGAUU...UGG-3'\n______________GGGGAAU_GGU___GGU__UGCA__GGC\n______________||::|||_:||___||:__||||__|||\n______________CCUUUUA_UCA___CCG__ACGU__CCG\n3'-UUU...UACAA_______G_________UU____UA___GGUUG...UUG-5'\n_____________|____________________________|\n_____________66___________________________40\n |
259 -- 265 |
59 -- 65 |
-20.3442 kcal/mol |
3.39574 kcal/mol |
5.80973 kcal/mol |
258 285@LB@ | |@LB@5'-AAC...AUUGG A AUU UU GGAUU...UGG-3'@LB@ GGGGAAU GGU GGU UGCA GGC@LB@ ||::||| :|| ||: |||| |||@LB@ CCUUUUA UCA CCG ACGU CCG@LB@3'-UUU...UACAA G UU UA GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -20.3442 kcal/mol@LB@Unfolding Energy - mRNA 3.39574 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 59 -- 65@LB@ |
85 |
0.007532 |
0.2889 |
b4252 |
tabA |
-7.64 |
0.334848 |
14 -- 22 |
41 -- 49 |
biofilm modulator regulated by toxins; DUF386 family protein cupin superfamily protein |
|
_____________13________23\n_____________|_________|\n5'-UCU...ACAGC_________GGGGG...CAA-3'\n______________UGCAAUGGC\n______________|||||||||\n______________ACGUUACCG\n3'-UUU...CCGUU_________GGUUG...UUG-5'\n_____________|_________|\n_____________50________40\n |
16 -- 22 |
41 -- 47 |
-14.0816 kcal/mol |
4.16801 kcal/mol |
2.27678 kcal/mol |
13 23@LB@ | |@LB@5'-UCU...ACAGC GGGGG...CAA-3'@LB@ UGCAAUGGC@LB@ |||||||||@LB@ ACGUUACCG@LB@3'-UUU...CCGUU GGUUG...UUG-5'@LB@ | |@LB@ 50 40@LB@@LB@@LB@Energy -7.64 kcal/mol@LB@Hybridization Energy -14.0816 kcal/mol@LB@Unfolding Energy - mRNA 4.16801 kcal/mol@LB@Unfolding Energy - sRNA 2.27678 kcal/mol@LB@@LB@Position - mRNA 14 -- 22@LB@Position - sRNA 41 -- 49@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 41 -- 47@LB@ |
3 |
3.498e-05 |
0.03921 |
b4255 |
rraB |
-13.36 |
0.020838 |
142 -- 156 |
41 -- 54 |
protein inhibitor of RNase E |
|
_____________141_____________157\n_____________|_______________|\n5'-GAG...GUGGA_______U_______GUGUG...CCA-3'\n______________GGCAAUG_CAGUGGU\n______________|||||||_||:|||:\n______________CCGUUAC_GUUACCG\n3'-UUU...AGUCA_______________GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
150 -- 156 |
41 -- 47 |
-21.65 kcal/mol |
4.39843 kcal/mol |
3.89026 kcal/mol |
141 157@LB@ | |@LB@5'-GAG...GUGGA U GUGUG...CCA-3'@LB@ GGCAAUG CAGUGGU@LB@ ||||||| ||:|||:@LB@ CCGUUAC GUUACCG@LB@3'-UUU...AGUCA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -21.65 kcal/mol@LB@Unfolding Energy - mRNA 4.39843 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 142 -- 156@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 41 -- 47@LB@ |
100 |
0.009417 |
0.3118 |
b4363 |
yjjB |
-11.70 |
0.052026 |
267 -- 280 |
41 -- 54 |
DUF3815 family inner membrane protein |
|
_____________266____________281\n_____________|______________|\n5'-ACU...CGGUC___UU_________GUUCA...GGG-3'\n______________GGC__UGCGAUGGU\n______________|||__|||:||||:\n______________CCG__ACGUUACCG\n3'-UUU...AGUCA___UU_________GGUUG...UUG-5'\n_____________|______________|\n_____________55_____________40\n |
274 -- 280 |
41 -- 47 |
-20.909 kcal/mol |
5.32115 kcal/mol |
3.89026 kcal/mol |
266 281@LB@ | |@LB@5'-ACU...CGGUC UU GUUCA...GGG-3'@LB@ GGC UGCGAUGGU@LB@ ||| |||:||||:@LB@ CCG ACGUUACCG@LB@3'-UUU...AGUCA UU GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -11.70 kcal/mol@LB@Hybridization Energy -20.909 kcal/mol@LB@Unfolding Energy - mRNA 5.32115 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 267 -- 280@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 41 -- 47@LB@ |