99 |
0.00311 |
0.1096 |
b2801 |
fucP |
-13.12 |
0.004165 |
162 -- 172 |
46 -- 56 |
L-fucose transporter |
|
_____________161_________173\n_____________|___________|\n5'-AUG...CAUAA___________CUUAA...CAC-3'\n______________CCGAUUACGUG\n______________|||||||||||\n______________GGCUAAUGCAC\n3'-AUU...GUUUA___________UUCAU...AUG-5'\n_____________|___________|\n_____________57__________45\n |
166 -- 172 |
46 -- 52 |
-17.4041 kcal/mol |
2.44124 kcal/mol |
1.86194 kcal/mol |
161 173@LB@ | |@LB@5'-AUG...CAUAA CUUAA...CAC-3'@LB@ CCGAUUACGUG@LB@ |||||||||||@LB@ GGCUAAUGCAC@LB@3'-AUU...GUUUA UUCAU...AUG-5'@LB@ | |@LB@ 57 45@LB@@LB@@LB@Energy -13.12 kcal/mol@LB@Hybridization Energy -17.4041 kcal/mol@LB@Unfolding Energy - mRNA 2.44124 kcal/mol@LB@Unfolding Energy - sRNA 1.86194 kcal/mol@LB@@LB@Position - mRNA 162 -- 172@LB@Position - sRNA 46 -- 56@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 46 -- 52@LB@ |
111 |
0.003555 |
0.1127 |
b2938 |
speA |
-9.18 |
0.077057 |
36 -- 48 |
46 -- 58 |
biosynthetic arginine decarboxylase PLP-binding |
|
_____________35____________49\n_____________|_____________|\n5'-GUU...CUUAC_____________CUUAA...GCA-3'\n______________GUUCGGUUAUGUG\n______________:|:||:|||:|||\n______________UAGGCUAAUGCAC\n3'-AUU...CGGUU_____________UUCAU...AUG-5'\n_____________|_____________|\n_____________59____________45\n |
42 -- 48 |
46 -- 52 |
-14.853 kcal/mol |
3.8258 kcal/mol |
1.8625 kcal/mol |
35 49@LB@ | |@LB@5'-GUU...CUUAC CUUAA...GCA-3'@LB@ GUUCGGUUAUGUG@LB@ :|:||:|||:|||@LB@ UAGGCUAAUGCAC@LB@3'-AUU...CGGUU UUCAU...AUG-5'@LB@ | |@LB@ 59 45@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -14.853 kcal/mol@LB@Unfolding Energy - mRNA 3.8258 kcal/mol@LB@Unfolding Energy - sRNA 1.8625 kcal/mol@LB@@LB@Position - mRNA 36 -- 48@LB@Position - sRNA 46 -- 58@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 46 -- 52@LB@ |
39 |
0.0004396 |
0.03766 |
b3669 |
uhpA |
-8.50 |
0.116685 |
77 -- 96 |
47 -- 66 |
response regulator in two-component regulatory system wtih UhpB |
|
_____________76___________________97\n_____________|____________________|\n5'-UCA...CGUAA______C_______CG____UUAAC...UUG-3'\n______________UCAGUC_GAUCCGA__AUGU\n______________||||:|_:||||||__|:||\n______________AGUCGG_UUAGGCU__UGCA\n3'-AUU...UUAUA______U_______AA____CUUCA...AUG-5'\n_____________|____________________|\n_____________67___________________46\n |
84 -- 90 |
53 -- 59 |
-21.6061 kcal/mol |
5.63687 kcal/mol |
7.4916 kcal/mol |
76 97@LB@ | |@LB@5'-UCA...CGUAA C CG UUAAC...UUG-3'@LB@ UCAGUC GAUCCGA AUGU@LB@ ||||:| :|||||| |:||@LB@ AGUCGG UUAGGCU UGCA@LB@3'-AUU...UUAUA U AA CUUCA...AUG-5'@LB@ | |@LB@ 67 46@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -21.6061 kcal/mol@LB@Unfolding Energy - mRNA 5.63687 kcal/mol@LB@Unfolding Energy - sRNA 7.4916 kcal/mol@LB@@LB@Position - mRNA 77 -- 96@LB@Position - sRNA 47 -- 66@LB@Position Seed - mRNA 84 -- 90@LB@Position Seed - sRNA 53 -- 59@LB@ |
107 |
0.003396 |
0.1101 |
b3871 |
typA |
-9.79 |
0.052081 |
283 -- 294 |
47 -- 59 |
GTP-binding protein |
|
_____________282___________295\n_____________|_____________|\n5'-UGC...CCAAC_____________UCGACU-3'\n______________AAUCCGGU_ACGU\n______________||||||:|_||||\n______________UUAGGCUA_UGCA\n3'-AUU...UCGGU________A____CUUCA...AUG-5'\n_____________|_____________|\n_____________60____________46\n |
284 -- 290 |
52 -- 58 |
-13.0383 kcal/mol |
1.68034 kcal/mol |
1.56852 kcal/mol |
282 295@LB@ | |@LB@5'-UGC...CCAAC UCGACU-3'@LB@ AAUCCGGU ACGU@LB@ ||||||:| ||||@LB@ UUAGGCUA UGCA@LB@3'-AUU...UCGGU A CUUCA...AUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -9.79 kcal/mol@LB@Hybridization Energy -13.0383 kcal/mol@LB@Unfolding Energy - mRNA 1.68034 kcal/mol@LB@Unfolding Energy - sRNA 1.56852 kcal/mol@LB@@LB@Position - mRNA 283 -- 294@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 52 -- 58@LB@ |
26 |
0.0002109 |
0.02687 |
b4122 |
fumB |
-13.50 |
0.002989 |
276 -- 286 |
47 -- 57 |
anaerobic class I fumarate hydratase (fumarase B) |
b1612 |
_____________275_________287\n_____________|___________|\n5'-UCC...UCACU___________UAGCG...ACU-3'\n______________UCCGAUUACGU\n______________|||||||||||\n______________AGGCUAAUGCA\n3'-AUU...GGUUU___________CUUCA...AUG-5'\n_____________|___________|\n_____________58__________46\n |
280 -- 286 |
47 -- 53 |
-16.5827 kcal/mol |
1.51899 kcal/mol |
1.56839 kcal/mol |
275 287@LB@ | |@LB@5'-UCC...UCACU UAGCG...ACU-3'@LB@ UCCGAUUACGU@LB@ |||||||||||@LB@ AGGCUAAUGCA@LB@3'-AUU...GGUUU CUUCA...AUG-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -16.5827 kcal/mol@LB@Unfolding Energy - mRNA 1.51899 kcal/mol@LB@Unfolding Energy - sRNA 1.56839 kcal/mol@LB@@LB@Position - mRNA 276 -- 286@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 47 -- 53@LB@ |
100 |
0.003115 |
0.1096 |
b0353 |
mhpT |
-8.28 |
0.132596 |
137 -- 146 |
48 -- 57 |
3-hydroxyphenylpropionic transporter |
|
_____________136________147\n_____________|__________|\n5'-CGG...AUAGU__________CGGCU...CGG-3'\n______________UCUGAUUACG\n______________||:|||||||\n______________AGGCUAAUGC\n3'-AUU...GGUUU__________ACUUC...AUG-5'\n_____________|__________|\n_____________58_________47\n |
140 -- 146 |
48 -- 54 |
-13.4725 kcal/mol |
3.61374 kcal/mol |
1.55976 kcal/mol |
136 147@LB@ | |@LB@5'-CGG...AUAGU CGGCU...CGG-3'@LB@ UCUGAUUACG@LB@ ||:|||||||@LB@ AGGCUAAUGC@LB@3'-AUU...GGUUU ACUUC...AUG-5'@LB@ | |@LB@ 58 47@LB@@LB@@LB@Energy -8.28 kcal/mol@LB@Hybridization Energy -13.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.61374 kcal/mol@LB@Unfolding Energy - sRNA 1.55976 kcal/mol@LB@@LB@Position - mRNA 137 -- 146@LB@Position - sRNA 48 -- 57@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 48 -- 54@LB@ |
163 |
0.006545 |
0.1413 |
b0532 |
sfmD |
-7.71 |
0.181786 |
104 -- 132 |
48 -- 76 |
putative outer membrane export usher protein |
b3144 b4317 b0940 |
_____________103____________________________133\n_____________|______________________________|\n5'-UCA...GGAAA______________A___UUAA________GUUCA...GCU-3'\n______________GCUGAAAU_UUCAG_CCG____UGAUUAUG\n______________|||:||||_|||||_||:____:|||||:|\n______________CGAUUUUA_AAGUC_GGU____GCUAAUGC\n3'-AUU...CCCGC________U_________UUAG________ACUUC...AUG-5'\n_____________|______________________________|\n_____________77_____________________________47\n |
126 -- 132 |
48 -- 54 |
-23.9612 kcal/mol |
8.59534 kcal/mol |
7.67378 kcal/mol |
103 133@LB@ | |@LB@5'-UCA...GGAAA A UUAA GUUCA...GCU-3'@LB@ GCUGAAAU UUCAG CCG UGAUUAUG@LB@ |||:|||| ||||| ||: :|||||:|@LB@ CGAUUUUA AAGUC GGU GCUAAUGC@LB@3'-AUU...CCCGC U UUAG ACUUC...AUG-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -7.71 kcal/mol@LB@Hybridization Energy -23.9612 kcal/mol@LB@Unfolding Energy - mRNA 8.59534 kcal/mol@LB@Unfolding Energy - sRNA 7.67378 kcal/mol@LB@@LB@Position - mRNA 104 -- 132@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 48 -- 54@LB@ |
106 |
0.003365 |
0.1101 |
b0955 |
ycbZ |
-10.52 |
0.031644 |
269 -- 288 |
48 -- 66 |
putative peptidase |
|
_____________268__________________289\n_____________|____________________|\n5'-UUG...UUUGC_______C_________A__AAAAC...CUU-3'\n______________UCAGCCA_AUUUGAUUG_CG\n______________|||||||_||::||||:_||\n______________AGUCGGU_UAGGCUAAU_GC\n3'-AUU...UUAUA_______U____________ACUUC...AUG-5'\n_____________|____________________|\n_____________67___________________47\n |
279 -- 285 |
50 -- 56 |
-21.5915 kcal/mol |
3.60671 kcal/mol |
7.48271 kcal/mol |
268 289@LB@ | |@LB@5'-UUG...UUUGC C A AAAAC...CUU-3'@LB@ UCAGCCA AUUUGAUUG CG@LB@ ||||||| ||::||||: ||@LB@ AGUCGGU UAGGCUAAU GC@LB@3'-AUU...UUAUA U ACUUC...AUG-5'@LB@ | |@LB@ 67 47@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -21.5915 kcal/mol@LB@Unfolding Energy - mRNA 3.60671 kcal/mol@LB@Unfolding Energy - sRNA 7.48271 kcal/mol@LB@@LB@Position - mRNA 269 -- 288@LB@Position - sRNA 48 -- 66@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 50 -- 56@LB@ |
108 |
0.003398 |
0.1101 |
b0973 |
hyaB |
-11.40 |
0.016694 |
267 -- 275 |
48 -- 56 |
hydrogenase 1 large subunit |
|
_____________266_______276\n_____________|_________|\n5'-GGU...UCGAC_________CGCAU...GCG-3'\n______________CCGAUUACG\n______________|||||||||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
269 -- 275 |
48 -- 54 |
-14.3171 kcal/mol |
1.33562 kcal/mol |
1.55919 kcal/mol |
266 276@LB@ | |@LB@5'-GGU...UCGAC CGCAU...GCG-3'@LB@ CCGAUUACG@LB@ |||||||||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -14.3171 kcal/mol@LB@Unfolding Energy - mRNA 1.33562 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 267 -- 275@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 48 -- 54@LB@ |
24 |
0.0002009 |
0.02687 |
b1487 |
ddpA |
-9.43 |
0.065911 |
261 -- 269 |
48 -- 56 |
D D-dipeptide ABC transporter periplasmic binding protein |
|
_____________260_______270\n_____________|_________|\n5'-UCA...AUUUC_________CACGC...UGA-3'\n______________CCGGUUGCG\n______________|||:||:||\n______________GGCUAAUGC\n3'-AUU...GUUUA_________ACUUC...AUG-5'\n_____________|_________|\n_____________57________47\n |
263 -- 269 |
48 -- 54 |
-13.2683 kcal/mol |
2.26031 kcal/mol |
1.55919 kcal/mol |
260 270@LB@ | |@LB@5'-UCA...AUUUC CACGC...UGA-3'@LB@ CCGGUUGCG@LB@ |||:||:||@LB@ GGCUAAUGC@LB@3'-AUU...GUUUA ACUUC...AUG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -13.2683 kcal/mol@LB@Unfolding Energy - mRNA 2.26031 kcal/mol@LB@Unfolding Energy - sRNA 1.55919 kcal/mol@LB@@LB@Position - mRNA 261 -- 269@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 48 -- 54@LB@ |