134 |
0.005847 |
0.146 |
b0065 |
yabI |
-9.48 |
0.206647 |
266 -- 290 |
24 -- 46 |
DedA family inner membrane protein |
|
_____________265_______________________291\n_____________|_________________________|\n5'-UGA...GUGUU_____CC_______AGUC_______CUGGU...GUU-3'\n______________GGUGG__UUUCUGG____GCUGGCG\n______________|||||__||:||||____|||:||:\n______________CCACC__AAGGACC____CGAUCGU\n3'-UUU...UUCCU______________AUGU_______AAAAU...UCG-5'\n_____________|_________________________|\n_____________47________________________23\n |
284 -- 290 |
24 -- 30 |
-26.6068 kcal/mol |
12.5692 kcal/mol |
4.55813 kcal/mol |
265 291@LB@ | |@LB@5'-UGA...GUGUU CC AGUC CUGGU...GUU-3'@LB@ GGUGG UUUCUGG GCUGGCG@LB@ ||||| ||:|||| |||:||:@LB@ CCACC AAGGACC CGAUCGU@LB@3'-UUU...UUCCU AUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -9.48 kcal/mol@LB@Hybridization Energy -26.6068 kcal/mol@LB@Unfolding Energy - mRNA 12.5692 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 266 -- 290@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 24 -- 30@LB@ |
123 |
0.005173 |
0.1413 |
b0839 |
dacC |
-12.36 |
0.054489 |
29 -- 38 |
24 -- 33 |
D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a |
|
_____________28_________39\n_____________|__________|\n5'-AUG...AAGCA__________AAAAA...AAG-3'\n______________ACAGCUGGCA\n______________||||||:|||\n______________UGUCGAUCGU\n3'-UUU...GACCA__________AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
32 -- 38 |
24 -- 30 |
-17.0494 kcal/mol |
3.2632 kcal/mol |
1.42716 kcal/mol |
28 39@LB@ | |@LB@5'-AUG...AAGCA AAAAA...AAG-3'@LB@ ACAGCUGGCA@LB@ ||||||:|||@LB@ UGUCGAUCGU@LB@3'-UUU...GACCA AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -12.36 kcal/mol@LB@Hybridization Energy -17.0494 kcal/mol@LB@Unfolding Energy - mRNA 3.2632 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 29 -- 38@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 24 -- 30@LB@ |
41 |
0.0008276 |
0.06626 |
b1218 |
chaC |
-8.54 |
0.293650 |
119 -- 139 |
24 -- 45 |
cation transport regulator |
|
_____________118____________________140\n_____________|______________________|\n5'-AUA...CGUUA________AAAAUG________AAAAU...CGC-3'\n______________GUGGUUUC______AGC_AGUA\n______________||||||:|______|||_||:|\n______________CACCAAGG______UCG_UCGU\n3'-UUU...UCCUC________ACCAUG___A____AAAAU...UCG-5'\n_____________|______________________|\n_____________46_____________________23\n |
120 -- 126 |
38 -- 44 |
-17.6586 kcal/mol |
4.55792 kcal/mol |
4.55794 kcal/mol |
118 140@LB@ | |@LB@5'-AUA...CGUUA AAAAUG AAAAU...CGC-3'@LB@ GUGGUUUC AGC AGUA@LB@ ||||||:| ||| ||:|@LB@ CACCAAGG UCG UCGU@LB@3'-UUU...UCCUC ACCAUG A AAAAU...UCG-5'@LB@ | |@LB@ 46 23@LB@@LB@@LB@Energy -8.54 kcal/mol@LB@Hybridization Energy -17.6586 kcal/mol@LB@Unfolding Energy - mRNA 4.55792 kcal/mol@LB@Unfolding Energy - sRNA 4.55794 kcal/mol@LB@@LB@Position - mRNA 119 -- 139@LB@Position - sRNA 24 -- 45@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 38 -- 44@LB@ |
37 |
0.0006972 |
0.06333 |
b1594 |
mlc |
-9.54 |
0.201866 |
190 -- 226 |
24 -- 50 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________189___________________________________227\n_____________|_____________________________________|\n5'-AAA...AUAUA____GUAUGC_______G___AAAAC____CUG____CAUUG...GUA-3'\n______________GGGA______GGUGGUU_CUG_____CAGC___GGCA\n______________:|||______|||||||_|||_____||||___:|||\n______________UCCU______CCACCAA_GAC_____GUCG___UCGU\n3'-UUU...CCGAU_________________G___CAU______A______AAAAU...UCG-5'\n_____________|_____________________________________|\n_____________51____________________________________23\n |
200 -- 206 |
40 -- 46 |
-27.1319 kcal/mol |
12.9802 kcal/mol |
4.6134 kcal/mol |
189 227@LB@ | |@LB@5'-AAA...AUAUA GUAUGC G AAAAC CUG CAUUG...GUA-3'@LB@ GGGA GGUGGUU CUG CAGC GGCA@LB@ :||| ||||||| ||| |||| :|||@LB@ UCCU CCACCAA GAC GUCG UCGU@LB@3'-UUU...CCGAU G CAU A AAAAU...UCG-5'@LB@ | |@LB@ 51 23@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -27.1319 kcal/mol@LB@Unfolding Energy - mRNA 12.9802 kcal/mol@LB@Unfolding Energy - sRNA 4.6134 kcal/mol@LB@@LB@Position - mRNA 190 -- 226@LB@Position - sRNA 24 -- 50@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
141 |
0.006623 |
0.1579 |
b1992 |
cobS |
-16.13 |
0.004945 |
167 -- 192 |
24 -- 49 |
cobalamin synthase |
|
_____________166_________________________193\n_____________|___________________________|\n5'-GAG...AGUAU__CU_________G_____UGG_____AAAAU...GUA-3'\n______________GG__GGUGGUUUC_GGUAU____AGUA\n______________||__|||||||:|_||||:____||:|\n______________CC__CCACCAAGG_CCAUG____UCGU\n3'-UUU...CGAUU__U__________A_____UCGA____AAAAU...UCG-5'\n_____________|___________________________|\n_____________50__________________________23\n |
173 -- 179 |
38 -- 44 |
-26.3933 kcal/mol |
5.70356 kcal/mol |
4.5591 kcal/mol |
166 193@LB@ | |@LB@5'-GAG...AGUAU CU G UGG AAAAU...GUA-3'@LB@ GG GGUGGUUUC GGUAU AGUA@LB@ || |||||||:| ||||: ||:|@LB@ CC CCACCAAGG CCAUG UCGU@LB@3'-UUU...CGAUU U A UCGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -16.13 kcal/mol@LB@Hybridization Energy -26.3933 kcal/mol@LB@Unfolding Energy - mRNA 5.70356 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 167 -- 192@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 38 -- 44@LB@ |
71 |
0.001933 |
0.09081 |
b2044 |
wcaL |
-10.40 |
0.140507 |
12 -- 21 |
24 -- 33 |
putative glycosyl transferase |
|
_____________11_________22\n_____________|__________|\n5'-GGG...AUGCA________G_CUACC...AGA-3'\n______________GCAGCUGG_A\n______________:|||||:|_|\n______________UGUCGAUC_U\n3'-UUU...GACCA________G_AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
13 -- 19 |
26 -- 32 |
-13.1871 kcal/mol |
1.35791 kcal/mol |
1.42716 kcal/mol |
11 22@LB@ | |@LB@5'-GGG...AUGCA G CUACC...AGA-3'@LB@ GCAGCUGG A@LB@ :|||||:| |@LB@ UGUCGAUC U@LB@3'-UUU...GACCA G AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -10.40 kcal/mol@LB@Hybridization Energy -13.1871 kcal/mol@LB@Unfolding Energy - mRNA 1.35791 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 12 -- 21@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 26 -- 32@LB@ |
20 |
0.0001678 |
0.0282 |
b2056 |
wcaD |
-17.66 |
0.001373 |
77 -- 104 |
24 -- 48 |
putative colanic acid polymerase |
|
_____________76___________________________105\n_____________|____________________________|\n5'-GCC...AAGAA______CUGCAA____________A___AACCG...UCA-3'\n______________GAGGUG______CUGGUGCAGUUA_GCA\n______________||||||______|||||:|||:||_|||\n______________CUCCAC______GACCAUGUCGAU_CGU\n3'-UUU...GAUUC______CAAG__________________AAAAU...UCG-5'\n_____________|____________________________|\n_____________49___________________________23\n |
94 -- 100 |
27 -- 33 |
-32.1729 kcal/mol |
9.95006 kcal/mol |
4.55899 kcal/mol |
76 105@LB@ | |@LB@5'-GCC...AAGAA CUGCAA A AACCG...UCA-3'@LB@ GAGGUG CUGGUGCAGUUA GCA@LB@ |||||| |||||:|||:|| |||@LB@ CUCCAC GACCAUGUCGAU CGU@LB@3'-UUU...GAUUC CAAG AAAAU...UCG-5'@LB@ | |@LB@ 49 23@LB@@LB@@LB@Energy -17.66 kcal/mol@LB@Hybridization Energy -32.1729 kcal/mol@LB@Unfolding Energy - mRNA 9.95006 kcal/mol@LB@Unfolding Energy - sRNA 4.55899 kcal/mol@LB@@LB@Position - mRNA 77 -- 104@LB@Position - sRNA 24 -- 48@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 27 -- 33@LB@ |
30 |
0.0004774 |
0.05348 |
b2148 |
mglC |
-7.69 |
0.389595 |
275 -- 281 |
24 -- 30 |
methyl-galactoside transporter subunit |
|
_____________274_____282\n_____________|_______|\n5'-AUC...GUUUU_______AUUAU...ACC-3'\n______________GCUGGCG\n______________|||:||:\n______________CGAUCGU\n3'-UUU...CAUGU_______AAAAU...UCG-5'\n_____________|_______|\n_____________31______23\n |
275 -- 281 |
24 -- 30 |
-10.2126 kcal/mol |
1.14582 kcal/mol |
1.37559 kcal/mol |
274 282@LB@ | |@LB@5'-AUC...GUUUU AUUAU...ACC-3'@LB@ GCUGGCG@LB@ |||:||:@LB@ CGAUCGU@LB@3'-UUU...CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 31 23@LB@@LB@@LB@Energy -7.69 kcal/mol@LB@Hybridization Energy -10.2126 kcal/mol@LB@Unfolding Energy - mRNA 1.14582 kcal/mol@LB@Unfolding Energy - sRNA 1.37559 kcal/mol@LB@@LB@Position - mRNA 275 -- 281@LB@Position - sRNA 24 -- 30@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 24 -- 30@LB@ |
132 |
0.005751 |
0.146 |
b2294 |
yfbU |
-8.39 |
0.309344 |
3 -- 25 |
24 -- 50 |
UPF0304 family protein |
|
_____________2______________________________26\n_____________|______________________________|\n_________5'-GC____________________GGU_______CCCGU...AAA-3'\n______________AGGAG______UCUGG_ACA___GUUGGCA\n______________|||||______:||||_|||___|:|:|||\n______________UCCUC______GGACC_UGU___CGAUCGU\n3'-UUU...CCGAU_____CACCAA_____A_____________AAAAU...UCG-5'\n_____________|______________________________|\n_____________51_____________________________23\n |
19 -- 25 |
24 -- 30 |
-20.5947 kcal/mol |
7.58762 kcal/mol |
4.6134 kcal/mol |
2 26@LB@ | |@LB@ 5'-GC GGU CCCGU...AAA-3'@LB@ AGGAG UCUGG ACA GUUGGCA@LB@ ||||| :|||| ||| |:|:|||@LB@ UCCUC GGACC UGU CGAUCGU@LB@3'-UUU...CCGAU CACCAA A AAAAU...UCG-5'@LB@ | |@LB@ 51 23@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -20.5947 kcal/mol@LB@Unfolding Energy - mRNA 7.58762 kcal/mol@LB@Unfolding Energy - sRNA 4.6134 kcal/mol@LB@@LB@Position - mRNA 3 -- 25@LB@Position - sRNA 24 -- 50@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 24 -- 30@LB@ |
198 |
0.01161 |
0.1971 |
b2712 |
hypF |
-10.23 |
0.151482 |
281 -- 290 |
24 -- 33 |
carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein |
|
_____________280________291\n_____________|__________|\n5'-GAA...GUCUG__________CAGCA...UAA-3'\n______________GCAGCUGGCA\n______________:|||||:|||\n______________UGUCGAUCGU\n3'-UUU...GACCA__________AAAAU...UCG-5'\n_____________|__________|\n_____________34_________23\n |
284 -- 290 |
24 -- 30 |
-16.4359 kcal/mol |
4.77953 kcal/mol |
1.42716 kcal/mol |
280 291@LB@ | |@LB@5'-GAA...GUCUG CAGCA...UAA-3'@LB@ GCAGCUGGCA@LB@ :|||||:|||@LB@ UGUCGAUCGU@LB@3'-UUU...GACCA AAAAU...UCG-5'@LB@ | |@LB@ 34 23@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -16.4359 kcal/mol@LB@Unfolding Energy - mRNA 4.77953 kcal/mol@LB@Unfolding Energy - sRNA 1.42716 kcal/mol@LB@@LB@Position - mRNA 281 -- 290@LB@Position - sRNA 24 -- 33@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 24 -- 30@LB@ |