173 |
0.007186 |
0.145 |
b3554 |
yiaF |
-10.99 |
0.063148 |
166 -- 198 |
46 -- 94 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________165_______________________________________________199\n_____________|_________________________________________________|\n5'-AAU...GUGUC________CU__UU___G_______________________________AAAUG...AGC-3'\n______________GUUGUGCG__UU__UUG_GU_______________GAAAGG_AGUAAGA\n______________||:||:||__|:__|||_|:_______________:|||||_|||||||\n______________CAGCAUGC__AG__AAC_CG_______________UUUUCC_UCAUUCU\n3'-UUU...AGCCG________UU__UU___A__AUACGUCAUUAAGUU______U_______GUUAU...ACG-5'\n_____________|_________________________________________________|\n_____________95________________________________________________45\n |
192 -- 198 |
46 -- 52 |
-24.2986 kcal/mol |
7.73667 kcal/mol |
5.5768 kcal/mol |
165 199@LB@ | |@LB@5'-AAU...GUGUC CU UU G AAAUG...AGC-3'@LB@ GUUGUGCG UU UUG GU GAAAGG AGUAAGA@LB@ ||:||:|| |: ||| |: :||||| |||||||@LB@ CAGCAUGC AG AAC CG UUUUCC UCAUUCU@LB@3'-UUU...AGCCG UU UU A AUACGUCAUUAAGUU U GUUAU...ACG-5'@LB@ | |@LB@ 95 45@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -24.2986 kcal/mol@LB@Unfolding Energy - mRNA 7.73667 kcal/mol@LB@Unfolding Energy - sRNA 5.5768 kcal/mol@LB@@LB@Position - mRNA 166 -- 198@LB@Position - sRNA 46 -- 94@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 46 -- 52@LB@ |
188 |
0.008258 |
0.1545 |
b3803 |
hemX |
-8.31 |
0.258101 |
280 -- 297 |
46 -- 62 |
putative uroporphyrinogen III methyltransferase |
|
_____________279________________298\n_____________|__________________|\n5'-AAA...CGCAA_______AAA________ACA-3'\n______________CAGAAAA___GAGUAAGA\n______________||:||||___:|||||||\n______________GUUUUUU___UUCAUUCU\n3'-UUU...AUUAA_______CC_________GUUAU...ACG-5'\n_____________|__________________|\n_____________63_________________45\n |
291 -- 297 |
46 -- 52 |
-11.8819 kcal/mol |
0.215347 kcal/mol |
3.36135 kcal/mol |
279 298@LB@ | |@LB@5'-AAA...CGCAA AAA ACA-3'@LB@ CAGAAAA GAGUAAGA@LB@ ||:|||| :|||||||@LB@ GUUUUUU UUCAUUCU@LB@3'-UUU...AUUAA CC GUUAU...ACG-5'@LB@ | |@LB@ 63 45@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -11.8819 kcal/mol@LB@Unfolding Energy - mRNA 0.215347 kcal/mol@LB@Unfolding Energy - sRNA 3.36135 kcal/mol@LB@@LB@Position - mRNA 280 -- 297@LB@Position - sRNA 46 -- 62@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 46 -- 52@LB@ |
161 |
0.006314 |
0.1377 |
b4099 |
phnI |
-7.36 |
0.387929 |
194 -- 228 |
46 -- 79 |
ribophosphonate triphosphate synthase complex putative catalytic subunit |
|
_____________193__________________________________229\n_____________|____________________________________|\n5'-AGC...GGAGG______G_____C__UGC___U_________C____AGGCG...GCG-3'\n______________UGUGCU_AUGUA_GU____CG_GAAAGGGGG_GAGA\n______________||||||_|||:|_||____|:_:|||||::|_:|||\n______________ACACGA_UACGU_CA____GU_UUUUCCUUC_UUCU\n3'-UUU...AGUUA_______________UUAA__U_________A____GUUAU...ACG-5'\n_____________|____________________________________|\n_____________80___________________________________45\n |
217 -- 223 |
51 -- 57 |
-26.8268 kcal/mol |
14.1464 kcal/mol |
5.32077 kcal/mol |
193 229@LB@ | |@LB@5'-AGC...GGAGG G C UGC U C AGGCG...GCG-3'@LB@ UGUGCU AUGUA GU CG GAAAGGGGG GAGA@LB@ |||||| |||:| || |: :|||||::| :|||@LB@ ACACGA UACGU CA GU UUUUCCUUC UUCU@LB@3'-UUU...AGUUA UUAA U A GUUAU...ACG-5'@LB@ | |@LB@ 80 45@LB@@LB@@LB@Energy -7.36 kcal/mol@LB@Hybridization Energy -26.8268 kcal/mol@LB@Unfolding Energy - mRNA 14.1464 kcal/mol@LB@Unfolding Energy - sRNA 5.32077 kcal/mol@LB@@LB@Position - mRNA 194 -- 228@LB@Position - sRNA 46 -- 79@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 51 -- 57@LB@ |
142 |
0.005444 |
0.1351 |
b3950 |
frwB |
-10.99 |
0.063119 |
13 -- 50 |
47 -- 86 |
putative enzyme IIB component of PTS |
b3899 |
_____________12__________________________________________51\n_____________|___________________________________________|\n5'-GCA...GGGGU____U__________C__________________C___C____UUAUA...GGG-3'\n______________GGUC_GAUUGUGCUG__CGGUGGUU____GAAGG_AAG_UGGG\n______________::||_:||||||||:__|:||::||____:||||_|||_|::|\n______________UUAG_UUAACACGAU__GUCAUUAA____UUUCC_UUC_AUUC\n3'-UUU...CAUGC_______________AC________GUUU______________UGUUA...ACG-5'\n_____________|___________________________________________|\n_____________87__________________________________________46\n |
30 -- 36 |
63 -- 69 |
-27.1662 kcal/mol |
11.4404 kcal/mol |
4.74035 kcal/mol |
12 51@LB@ | |@LB@5'-GCA...GGGGU U C C C UUAUA...GGG-3'@LB@ GGUC GAUUGUGCUG CGGUGGUU GAAGG AAG UGGG@LB@ ::|| :||||||||: |:||::|| :|||| ||| |::|@LB@ UUAG UUAACACGAU GUCAUUAA UUUCC UUC AUUC@LB@3'-UUU...CAUGC AC GUUU UGUUA...ACG-5'@LB@ | |@LB@ 87 46@LB@@LB@@LB@Energy -10.99 kcal/mol@LB@Hybridization Energy -27.1662 kcal/mol@LB@Unfolding Energy - mRNA 11.4404 kcal/mol@LB@Unfolding Energy - sRNA 4.74035 kcal/mol@LB@@LB@Position - mRNA 13 -- 50@LB@Position - sRNA 47 -- 86@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 63 -- 69@LB@ |
130 |
0.00465 |
0.126 |
b2916 |
argP |
-9.43 |
0.148863 |
238 -- 266 |
47 -- 73 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________237___________________________267\n_____________|_____________________________|\n5'-GGC...ACUGG__________ACG____C_____UU____CGCGC...CAG-3'\n______________AUGCGGUGAU___UGAA_GAGGA__UGAG\n______________||||:||:||___::||_:||||__|:||\n______________UACGUCAUUA___GUUU_UUCCU__AUUC\n3'-UUU...CACGA__________A______U_____UC____UGUUA...ACG-5'\n_____________|_____________________________|\n_____________74____________________________46\n |
240 -- 246 |
65 -- 71 |
-19.9139 kcal/mol |
5.97985 kcal/mol |
4.50495 kcal/mol |
237 267@LB@ | |@LB@5'-GGC...ACUGG ACG C UU CGCGC...CAG-3'@LB@ AUGCGGUGAU UGAA GAGGA UGAG@LB@ ||||:||:|| ::|| :|||| |:||@LB@ UACGUCAUUA GUUU UUCCU AUUC@LB@3'-UUU...CACGA A U UC UGUUA...ACG-5'@LB@ | |@LB@ 74 46@LB@@LB@@LB@Energy -9.43 kcal/mol@LB@Hybridization Energy -19.9139 kcal/mol@LB@Unfolding Energy - mRNA 5.97985 kcal/mol@LB@Unfolding Energy - sRNA 4.50495 kcal/mol@LB@@LB@Position - mRNA 238 -- 266@LB@Position - sRNA 47 -- 73@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 65 -- 71@LB@ |
9 |
1.504e-05 |
0.005627 |
b1189 |
dadA |
-11.44 |
0.048458 |
195 -- 226 |
48 -- 78 |
D-amino acid dehydrogenase |
|
_____________194_______________________________227\n_____________|_________________________________|\n5'-CCG...UCGGA__G_______G___UG____UACU_________UGUGG...CGG-3'\n______________GU_GCUAUGC_AGU___UCA____GGGAAGUGG\n______________||_|||||||_|||___|||____:||||||::\n______________CA_CGAUACG_UCA___AGU____UCCUUCAUU\n3'-UUU...GUUAA______________UUA___UUUU_________CUGUU...ACG-5'\n_____________|_________________________________|\n_____________79________________________________47\n |
220 -- 226 |
48 -- 54 |
-26.7579 kcal/mol |
10.7545 kcal/mol |
4.57065 kcal/mol |
194 227@LB@ | |@LB@5'-CCG...UCGGA G G UG UACU UGUGG...CGG-3'@LB@ GU GCUAUGC AGU UCA GGGAAGUGG@LB@ || ||||||| ||| ||| :||||||::@LB@ CA CGAUACG UCA AGU UCCUUCAUU@LB@3'-UUU...GUUAA UUA UUUU CUGUU...ACG-5'@LB@ | |@LB@ 79 47@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -26.7579 kcal/mol@LB@Unfolding Energy - mRNA 10.7545 kcal/mol@LB@Unfolding Energy - sRNA 4.57065 kcal/mol@LB@@LB@Position - mRNA 195 -- 226@LB@Position - sRNA 48 -- 78@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 48 -- 54@LB@ |
110 |
0.003505 |
0.1114 |
b4111 |
proP |
-11.30 |
0.052648 |
186 -- 222 |
48 -- 93 |
proline/glycine betaine transporter |
|
_____________185________________________________________________223\n_____________|__________________________________________________|\n5'-CAC...CCAAC_________GA_____________U________________AAAA_____AACCG...GUA-3'\n______________UC_UGCGAG__AA____GCUAUGC_________GAAAAGGA____AGUAA\n______________||_|:|||:__||____|||||||_________:|||||||____|||||\n______________AG_AUGCUU__UU____CGAUACG_________UUUUUCCU____UCAUU\n3'-UUU...GCCGC__C______AG__AACA_______UCAUUAAGU_________________CUGUU...ACG-5'\n_____________|__________________________________________________|\n_____________94_________________________________________________47\n |
198 -- 204 |
70 -- 76 |
-22.6159 kcal/mol |
6.45165 kcal/mol |
4.87071 kcal/mol |
185 223@LB@ | |@LB@5'-CAC...CCAAC GA U AAAA AACCG...GUA-3'@LB@ UC UGCGAG AA GCUAUGC GAAAAGGA AGUAA@LB@ || |:|||: || ||||||| :||||||| |||||@LB@ AG AUGCUU UU CGAUACG UUUUUCCU UCAUU@LB@3'-UUU...GCCGC C AG AACA UCAUUAAGU CUGUU...ACG-5'@LB@ | |@LB@ 94 47@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -22.6159 kcal/mol@LB@Unfolding Energy - mRNA 6.45165 kcal/mol@LB@Unfolding Energy - sRNA 4.87071 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 48 -- 93@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 70 -- 76@LB@ |
76 |
0.001842 |
0.08273 |
b1717 |
rpmI |
-9.61 |
0.135308 |
218 -- 256 |
48 -- 92 |
50S ribosomal subunit protein L35 |
|
_____________217___________________________________________257\n_____________|_____________________________________________|\n5'-GCG...AAGAC_____________GC_____A___C____________ACC_____AGGUG...UGA-3'\n______________CGUACG___CGGU__UGCUA_GCG____UUCAAAAAA___GGUAA\n______________||||||___|::|__|||||_||:____|||||||||___:||||\n______________GCAUGC___GUUA__ACGAU_CGU____AAGUUUUUU___UCAUU\n3'-UUU...CCGCA______UUA____AC_____A___CAUU_________CCU_____CUGUU...ACG-5'\n_____________|_____________________________________________|\n_____________93____________________________________________47\n |
242 -- 248 |
56 -- 62 |
-26.2826 kcal/mol |
11.8203 kcal/mol |
4.85131 kcal/mol |
217 257@LB@ | |@LB@5'-GCG...AAGAC GC A C ACC AGGUG...UGA-3'@LB@ CGUACG CGGU UGCUA GCG UUCAAAAAA GGUAA@LB@ |||||| |::| ||||| ||: ||||||||| :||||@LB@ GCAUGC GUUA ACGAU CGU AAGUUUUUU UCAUU@LB@3'-UUU...CCGCA UUA AC A CAUU CCU CUGUU...ACG-5'@LB@ | |@LB@ 93 47@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -26.2826 kcal/mol@LB@Unfolding Energy - mRNA 11.8203 kcal/mol@LB@Unfolding Energy - sRNA 4.85131 kcal/mol@LB@@LB@Position - mRNA 218 -- 256@LB@Position - sRNA 48 -- 92@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 56 -- 62@LB@ |
49 |
0.0005476 |
0.03937 |
b2432 |
yfeY |
-8.84 |
0.200409 |
189 -- 199 |
48 -- 58 |
RpoE-regulated lipoprotein |
|
_____________188_________200\n_____________|___________|\n5'-GCU...UAACC___________CAUGA...ACU-3'\n______________AAAGGAAGUGA\n______________|||||||||:|\n______________UUUCCUUCAUU\n3'-UUU...AGUUU___________CUGUU...ACG-5'\n_____________|___________|\n_____________59__________47\n |
193 -- 199 |
48 -- 54 |
-12.8959 kcal/mol |
3.31176 kcal/mol |
0.745549 kcal/mol |
188 200@LB@ | |@LB@5'-GCU...UAACC CAUGA...ACU-3'@LB@ AAAGGAAGUGA@LB@ |||||||||:|@LB@ UUUCCUUCAUU@LB@3'-UUU...AGUUU CUGUU...ACG-5'@LB@ | |@LB@ 59 47@LB@@LB@@LB@Energy -8.84 kcal/mol@LB@Hybridization Energy -12.8959 kcal/mol@LB@Unfolding Energy - mRNA 3.31176 kcal/mol@LB@Unfolding Energy - sRNA 0.745549 kcal/mol@LB@@LB@Position - mRNA 189 -- 199@LB@Position - sRNA 48 -- 58@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 48 -- 54@LB@ |
194 |
0.008684 |
0.1548 |
b1242 |
ychE |
-7.20 |
0.413978 |
105 -- 113 |
48 -- 56 |
UPF0056 family inner membrane protein |
|
_____________104_______114\n_____________|_________|\n5'-CAU...UAGUU_________AAAAU...GCA-3'\n______________AGGAGGUGA\n______________||||:||:|\n______________UCCUUCAUU\n3'-UUU...UUUUU_________CUGUU...ACG-5'\n_____________|_________|\n_____________57________47\n |
107 -- 113 |
48 -- 54 |
-10.6218 kcal/mol |
2.70901 kcal/mol |
0.718267 kcal/mol |
104 114@LB@ | |@LB@5'-CAU...UAGUU AAAAU...GCA-3'@LB@ AGGAGGUGA@LB@ ||||:||:|@LB@ UCCUUCAUU@LB@3'-UUU...UUUUU CUGUU...ACG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -10.6218 kcal/mol@LB@Unfolding Energy - mRNA 2.70901 kcal/mol@LB@Unfolding Energy - sRNA 0.718267 kcal/mol@LB@@LB@Position - mRNA 105 -- 113@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 48 -- 54@LB@ |