42 |
0.001686 |
0.1293 |
b2733 |
mutS |
-6.21 |
0.172669 |
203 -- 222 |
25 -- 42 |
methyl-directed mismatch repair protein |
|
_____________202__________________223\n_____________|____________________|\n5'-GAU...CCCAU______AA_________U__ACGCC...UGG-3'\n______________GAGUGC__UAGAAAAUU_CG\n______________:||::|__||:||||||_||\n______________UUCGUG__AUUUUUUAA_GC\n3'-UUU...CGUUC______A_____________AAUGU...CAA-5'\n_____________|____________________|\n_____________43___________________24\n |
213 -- 219 |
27 -- 33 |
-10.4027 kcal/mol |
2.54535 kcal/mol |
1.64855 kcal/mol |
202 223@LB@ | |@LB@5'-GAU...CCCAU AA U ACGCC...UGG-3'@LB@ GAGUGC UAGAAAAUU CG@LB@ :||::| ||:|||||| ||@LB@ UUCGUG AUUUUUUAA GC@LB@3'-UUU...CGUUC A AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -6.21 kcal/mol@LB@Hybridization Energy -10.4027 kcal/mol@LB@Unfolding Energy - mRNA 2.54535 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 203 -- 222@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 27 -- 33@LB@ |
113 |
0.009602 |
0.2693 |
b3237 |
argR |
-14.05 |
0.000763 |
205 -- 250 |
27 -- 60 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________204_____________________________________________251\n_____________|_______________________________________________|\n5'-ACA...UAUGC______CG____________AGAACUAGUUAA___________C___ACUUA...UGC-3'\n______________GAAGCU__GC_UAAGCAAGA____________AGCAUUUAAAG_AUU\n______________|||:||__||_|||||||||____________||||:|||||:_|||\n______________CUUUGA__CG_AUUCGUUCU____________UCGUGAAUUUU_UAA\n3'-UUU...CCCUA______A___A________________________________U___GCAAU...CAA-5'\n_____________|_______________________________________________|\n_____________61______________________________________________26\n |
238 -- 244 |
33 -- 39 |
-28.1986 kcal/mol |
7.87477 kcal/mol |
6.27096 kcal/mol |
204 251@LB@ | |@LB@5'-ACA...UAUGC CG AGAACUAGUUAA C ACUUA...UGC-3'@LB@ GAAGCU GC UAAGCAAGA AGCAUUUAAAG AUU@LB@ |||:|| || ||||||||| ||||:|||||: |||@LB@ CUUUGA CG AUUCGUUCU UCGUGAAUUUU UAA@LB@3'-UUU...CCCUA A A U GCAAU...CAA-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -28.1986 kcal/mol@LB@Unfolding Energy - mRNA 7.87477 kcal/mol@LB@Unfolding Energy - sRNA 6.27096 kcal/mol@LB@@LB@Position - mRNA 205 -- 250@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
145 |
0.01456 |
0.3231 |
b1529 |
marC |
-5.50 |
0.250589 |
206 -- 227 |
39 -- 59 |
UPF0056 family inner membrane protein |
|
_____________205____________________228\n_____________|______________________|\n5'-UGG...AUGUU__________A______UU___CUGGG...GCA-3'\n______________AGAUUUGUUU_AAGCAA__GGC\n______________|:|:|||:||_||||||__:||\n______________UUUGAACGAA_UUCGUU__UCG\n3'-UUU...CCUAC_________________CU___UGAAU...CAA-5'\n_____________|______________________|\n_____________60_____________________38\n |
207 -- 213 |
52 -- 58 |
-17.1508 kcal/mol |
5.49588 kcal/mol |
6.15149 kcal/mol |
205 228@LB@ | |@LB@5'-UGG...AUGUU A UU CUGGG...GCA-3'@LB@ AGAUUUGUUU AAGCAA GGC@LB@ |:|:|||:|| |||||| :||@LB@ UUUGAACGAA UUCGUU UCG@LB@3'-UUU...CCUAC CU UGAAU...CAA-5'@LB@ | |@LB@ 60 38@LB@@LB@@LB@Energy -5.50 kcal/mol@LB@Hybridization Energy -17.1508 kcal/mol@LB@Unfolding Energy - mRNA 5.49588 kcal/mol@LB@Unfolding Energy - sRNA 6.15149 kcal/mol@LB@@LB@Position - mRNA 206 -- 227@LB@Position - sRNA 39 -- 59@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 52 -- 58@LB@ |
52 |
0.002466 |
0.1527 |
b3527 |
yhjJ |
-8.40 |
0.046956 |
207 -- 220 |
25 -- 41 |
putative periplasmic M16 family chaperone |
|
_____________206_______________221\n_____________|_________________|\n5'-CUC...UGCAG_________________ACUUU...GGC-3'\n______________GGCAC___AAAAAUUCG\n______________:||||___|||||||||\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
214 -- 220 |
25 -- 31 |
-13.4116 kcal/mol |
3.36563 kcal/mol |
1.64839 kcal/mol |
206 221@LB@ | |@LB@5'-CUC...UGCAG ACUUU...GGC-3'@LB@ GGCAC AAAAAUUCG@LB@ :|||| |||||||||@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -13.4116 kcal/mol@LB@Unfolding Energy - mRNA 3.36563 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 207 -- 220@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 25 -- 31@LB@ |
173 |
0.01972 |
0.3669 |
b3426 |
glpD |
-5.91 |
0.203159 |
207 -- 224 |
3 -- 20 |
sn-glycerol-3-phosphate dehydrogenase aerobic FAD/NAD(P)-binding |
|
_____________206_________________225\n_____________|___________________|\n5'-AAC...UGGAA____A_________U____AUAGG...AGG-3'\n______________ACCA__AGAUCUGA_UGUG\n______________||||__|:||||||_||||\n______________UGGU__UUUAGACU_ACAC\n3'-UUU...CAAUG____CC_____________AA-5'\n_____________|___________________|\n_____________21__________________2\n |
213 -- 219 |
7 -- 13 |
-16.1802 kcal/mol |
2.74973 kcal/mol |
7.52321 kcal/mol |
206 225@LB@ | |@LB@5'-AAC...UGGAA A U AUAGG...AGG-3'@LB@ ACCA AGAUCUGA UGUG@LB@ |||| |:|||||| ||||@LB@ UGGU UUUAGACU ACAC@LB@3'-UUU...CAAUG CC AA-5'@LB@ | |@LB@ 21 2@LB@@LB@@LB@Energy -5.91 kcal/mol@LB@Hybridization Energy -16.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.74973 kcal/mol@LB@Unfolding Energy - sRNA 7.52321 kcal/mol@LB@@LB@Position - mRNA 207 -- 224@LB@Position - sRNA 3 -- 20@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 7 -- 13@LB@ |
112 |
0.009574 |
0.2693 |
b2494 |
bepA |
-6.13 |
0.179960 |
208 -- 220 |
29 -- 41 |
OM protein maintenance and assembly metalloprotease and chaperone periplasmic |
|
_____________207___________221\n_____________|_____________|\n5'-UGA...GUUCA____G________AAACC...UGC-3'\n______________GGCA_UUGAAAAA\n______________:|||_||:|||||\n______________UCGU_AAUUUUUU\n3'-UUU...GUUCU____G________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
214 -- 220 |
29 -- 35 |
-11.3192 kcal/mol |
3.5632 kcal/mol |
1.62306 kcal/mol |
207 221@LB@ | |@LB@5'-UGA...GUUCA G AAACC...UGC-3'@LB@ GGCA UUGAAAAA@LB@ :||| ||:|||||@LB@ UCGU AAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -6.13 kcal/mol@LB@Hybridization Energy -11.3192 kcal/mol@LB@Unfolding Energy - mRNA 3.5632 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 208 -- 220@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 29 -- 35@LB@ |
194 |
0.02335 |
0.3864 |
b4182 |
yjfJ |
-9.08 |
0.030148 |
209 -- 238 |
10 -- 37 |
PspA/IM30 family protein |
|
_____________208____________________________239\n_____________|______________________________|\n5'-GAA...GGAAU____________AU______UG________GUUUA...AGC-3'\n______________UUUAAAAAGUUU__UUACGC__GGGAAAUC\n______________:|||||||:||:__||||:|__:|||||||\n______________GAAUUUUUUAAG__AAUGUG__UCCUUUAG\n3'-UUU...UUCGU____________C_______G_________ACUAC...CAA-5'\n_____________|______________________________|\n_____________38_____________________________9\n |
232 -- 238 |
10 -- 16 |
-23.4786 kcal/mol |
5.49388 kcal/mol |
8.90309 kcal/mol |
208 239@LB@ | |@LB@5'-GAA...GGAAU AU UG GUUUA...AGC-3'@LB@ UUUAAAAAGUUU UUACGC GGGAAAUC@LB@ :|||||||:||: ||||:| :|||||||@LB@ GAAUUUUUUAAG AAUGUG UCCUUUAG@LB@3'-UUU...UUCGU C G ACUAC...CAA-5'@LB@ | |@LB@ 38 9@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -23.4786 kcal/mol@LB@Unfolding Energy - mRNA 5.49388 kcal/mol@LB@Unfolding Energy - sRNA 8.90309 kcal/mol@LB@@LB@Position - mRNA 209 -- 238@LB@Position - sRNA 10 -- 37@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 10 -- 16@LB@ |
121 |
0.01057 |
0.2813 |
b0452 |
tesB |
-8.75 |
0.037433 |
210 -- 223 |
26 -- 40 |
acyl-CoA thioesterase 2 |
|
_____________209_____________224\n_____________|_______________|\n5'-CAA...GUCAG_______________ACUGA...AGG-3'\n______________GCGC_UAAAAAAUUU\n______________||:|_|||||||||:\n______________CGUG_AUUUUUUAAG\n3'-UUU...UUCUU____A__________CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
217 -- 223 |
26 -- 32 |
-10.9054 kcal/mol |
0.50684 kcal/mol |
1.64811 kcal/mol |
209 224@LB@ | |@LB@5'-CAA...GUCAG ACUGA...AGG-3'@LB@ GCGC UAAAAAAUUU@LB@ ||:| |||||||||:@LB@ CGUG AUUUUUUAAG@LB@3'-UUU...UUCUU A CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -10.9054 kcal/mol@LB@Unfolding Energy - mRNA 0.50684 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 26 -- 32@LB@ |
6 |
4.032e-05 |
0.02042 |
b0889 |
lrp |
-10.51 |
0.011361 |
210 -- 221 |
37 -- 48 |
leucine-responsive global transcriptional regulator |
|
_____________209__________222\n_____________|____________|\n5'-GUG...UAGAU____________CCUGG...AGC-3'\n______________AGCAAGAAGCGC\n______________||||||||||:|\n______________UCGUUCUUCGUG\n3'-UUU...CGAAU____________AAUUU...CAA-5'\n_____________|____________|\n_____________49___________36\n |
215 -- 221 |
37 -- 43 |
-19.5953 kcal/mol |
3.24674 kcal/mol |
5.83483 kcal/mol |
209 222@LB@ | |@LB@5'-GUG...UAGAU CCUGG...AGC-3'@LB@ AGCAAGAAGCGC@LB@ ||||||||||:|@LB@ UCGUUCUUCGUG@LB@3'-UUU...CGAAU AAUUU...CAA-5'@LB@ | |@LB@ 49 36@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -19.5953 kcal/mol@LB@Unfolding Energy - mRNA 3.24674 kcal/mol@LB@Unfolding Energy - sRNA 5.83483 kcal/mol@LB@@LB@Position - mRNA 210 -- 221@LB@Position - sRNA 37 -- 48@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 37 -- 43@LB@ |
29 |
0.000834 |
0.09021 |
b2798 |
ygdG |
-11.41 |
0.005967 |
211 -- 245 |
24 -- 57 |
Ssb-binding protein misidentified as ExoIX |
|
_____________210_________________________________246\n_____________|___________________________________|\n5'-CCA...UGUUC_________UUGUC__U_____GAAUCUU______CGCAU...UCG-3'\n______________AUUUGCUUA_____GA_GCACU_______AUUCGU\n______________|:|||||||_____||_|||||_______||||||\n______________UGAACGAAU_____CU_CGUGA_______UAAGCA\n3'-UUU...UACUU_________UCGUU__U_____AUUUUU_______AUGUG...CAA-5'\n_____________|___________________________________|\n_____________58__________________________________23\n |
213 -- 219 |
49 -- 55 |
-23.2646 kcal/mol |
5.57825 kcal/mol |
6.27607 kcal/mol |
210 246@LB@ | |@LB@5'-CCA...UGUUC UUGUC U GAAUCUU CGCAU...UCG-3'@LB@ AUUUGCUUA GA GCACU AUUCGU@LB@ |:||||||| || ||||| ||||||@LB@ UGAACGAAU CU CGUGA UAAGCA@LB@3'-UUU...UACUU UCGUU U AUUUUU AUGUG...CAA-5'@LB@ | |@LB@ 58 23@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -23.2646 kcal/mol@LB@Unfolding Energy - mRNA 5.57825 kcal/mol@LB@Unfolding Energy - sRNA 6.27607 kcal/mol@LB@@LB@Position - mRNA 211 -- 245@LB@Position - sRNA 24 -- 57@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 49 -- 55@LB@ |