10 |
0.0001005 |
0.03239 |
b1260 |
trpA |
-10.26 |
0.013526 |
184 -- 203 |
5 -- 22 |
tryptophan synthase alpha subunit |
|
_____________183__________________204\n_____________|____________________|\n5'-GCC...UGAAA____GAG_____________GAACG...CAU-3'\n______________GCAC___GGGAAAUCUGAUG\n______________:|||___:||||||||||||\n______________UGUG___UCCUUUAGACUAC\n3'-UUU...AGCAA____G_______________ACAA-5'\n_____________|____________________|\n_____________23___________________4\n |
192 -- 198 |
10 -- 16 |
-23.1901 kcal/mol |
5.35202 kcal/mol |
7.57357 kcal/mol |
183 204@LB@ | |@LB@5'-GCC...UGAAA GAG GAACG...CAU-3'@LB@ GCAC GGGAAAUCUGAUG@LB@ :||| :||||||||||||@LB@ UGUG UCCUUUAGACUAC@LB@3'-UUU...AGCAA G ACAA-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -23.1901 kcal/mol@LB@Unfolding Energy - mRNA 5.35202 kcal/mol@LB@Unfolding Energy - sRNA 7.57357 kcal/mol@LB@@LB@Position - mRNA 184 -- 203@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 10 -- 16@LB@ |
79 |
0.005218 |
0.2128 |
b1264 |
trpE |
-7.84 |
0.066605 |
225 -- 250 |
34 -- 59 |
component I of anthranilate synthase |
|
_____________224__________________________251\n_____________|____________________________|\n5'-UGU...CUCUC_________AACCU______________UCGCG...CGG-3'\n______________GAAC_UGCU_____GCGA_AGGCGCUUA\n______________:|||_||||_____||:|_|:||:||||\n______________UUUG_ACGA_____CGUU_UUCGUGAAU\n3'-UUU...CCUAC____A____AUU______C_________UUUUU...CAA-5'\n_____________|____________________________|\n_____________60___________________________33\n |
244 -- 250 |
34 -- 40 |
-20.2106 kcal/mol |
6.10702 kcal/mol |
6.26371 kcal/mol |
224 251@LB@ | |@LB@5'-UGU...CUCUC AACCU UCGCG...CGG-3'@LB@ GAAC UGCU GCGA AGGCGCUUA@LB@ :||| |||| ||:| |:||:||||@LB@ UUUG ACGA CGUU UUCGUGAAU@LB@3'-UUU...CCUAC A AUU C UUUUU...CAA-5'@LB@ | |@LB@ 60 33@LB@@LB@@LB@Energy -7.84 kcal/mol@LB@Hybridization Energy -20.2106 kcal/mol@LB@Unfolding Energy - mRNA 6.10702 kcal/mol@LB@Unfolding Energy - sRNA 6.26371 kcal/mol@LB@@LB@Position - mRNA 225 -- 250@LB@Position - sRNA 34 -- 59@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 34 -- 40@LB@ |
64 |
0.003339 |
0.1645 |
b3166 |
truB |
-7.27 |
0.093914 |
187 -- 199 |
36 -- 48 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________186___________200\n_____________|_____________|\n5'-GGC...ACGAC_________G___AAUGA...AAC-3'\n______________AGCAAGGAG_ACU\n______________||||||:||_|||\n______________UCGUUCUUC_UGA\n3'-UUU...CGAAU_________G___AUUUU...CAA-5'\n_____________|_____________|\n_____________49____________35\n |
189 -- 195 |
40 -- 46 |
-16.8762 kcal/mol |
3.76451 kcal/mol |
5.83861 kcal/mol |
186 200@LB@ | |@LB@5'-GGC...ACGAC G AAUGA...AAC-3'@LB@ AGCAAGGAG ACU@LB@ ||||||:|| |||@LB@ UCGUUCUUC UGA@LB@3'-UUU...CGAAU G AUUUU...CAA-5'@LB@ | |@LB@ 49 35@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -16.8762 kcal/mol@LB@Unfolding Energy - mRNA 3.76451 kcal/mol@LB@Unfolding Energy - sRNA 5.83861 kcal/mol@LB@@LB@Position - mRNA 187 -- 199@LB@Position - sRNA 36 -- 48@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 40 -- 46@LB@ |
91 |
0.006547 |
0.2317 |
b1323 |
tyrR |
-8.26 |
0.051378 |
202 -- 222 |
3 -- 23 |
aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
|
_____________201___________________223\n_____________|_____________________|\n5'-UCG...UCCCA______U________UU____AAGAC...UUG-3'\n______________UGCGUC_GGAAGUCU__UGUG\n______________|:|::|_||||:|||__||||\n______________AUGUGG_CCUUUAGA__ACAC\n3'-UUU...AAGCA______U________CU____AA-5'\n_____________|_____________________|\n_____________24____________________2\n |
209 -- 215 |
10 -- 16 |
-19.6247 kcal/mol |
3.79223 kcal/mol |
7.5769 kcal/mol |
201 223@LB@ | |@LB@5'-UCG...UCCCA U UU AAGAC...UUG-3'@LB@ UGCGUC GGAAGUCU UGUG@LB@ |:|::| ||||:||| ||||@LB@ AUGUGG CCUUUAGA ACAC@LB@3'-UUU...AAGCA U CU AA-5'@LB@ | |@LB@ 24 2@LB@@LB@@LB@Energy -8.26 kcal/mol@LB@Hybridization Energy -19.6247 kcal/mol@LB@Unfolding Energy - mRNA 3.79223 kcal/mol@LB@Unfolding Energy - sRNA 7.5769 kcal/mol@LB@@LB@Position - mRNA 202 -- 222@LB@Position - sRNA 3 -- 23@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 10 -- 16@LB@ |
39 |
0.00159 |
0.1292 |
b1637 |
tyrS |
-8.51 |
0.043578 |
178 -- 203 |
5 -- 27 |
tyrosyl-tRNA synthetase |
|
_____________177________________________204\n_____________|__________________________|\n5'-CAU...UGCAG_________A__U_______U_____GCAAG...CGA-3'\n______________UCGUUAUAU_CA_GGAGAUU_UGAUG\n______________||||||:|:_||_|||:||:_|||||\n______________AGCAAUGUG_GU_CCUUUAG_ACUAC\n3'-UUU...UUUUA__________________________ACAA-5'\n_____________|__________________________|\n_____________28_________________________4\n |
191 -- 197 |
10 -- 16 |
-22.7194 kcal/mol |
5.60368 kcal/mol |
8.60118 kcal/mol |
177 204@LB@ | |@LB@5'-CAU...UGCAG A U U GCAAG...CGA-3'@LB@ UCGUUAUAU CA GGAGAUU UGAUG@LB@ ||||||:|: || |||:||: |||||@LB@ AGCAAUGUG GU CCUUUAG ACUAC@LB@3'-UUU...UUUUA ACAA-5'@LB@ | |@LB@ 28 4@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -22.7194 kcal/mol@LB@Unfolding Energy - mRNA 5.60368 kcal/mol@LB@Unfolding Energy - sRNA 8.60118 kcal/mol@LB@@LB@Position - mRNA 178 -- 203@LB@Position - sRNA 5 -- 27@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 10 -- 16@LB@ |
181 |
0.0215 |
0.3768 |
b3843 |
ubiD |
-7.81 |
0.067872 |
2 -- 28 |
14 -- 40 |
3-octaprenyl-4-hydroxybenzoate decarboxylase |
|
_____________1____________________________29\n_____________|____________________________|\n__________5'-C_______CAGUACA___AA_________UUGCA...UGG-3'\n______________GCGCUUG________GU__AUACCAGGA\n______________||:|||:________||__|:|||||||\n______________CGUGAAU________CA__UGUGGUCCU\n3'-UUU...UUCUU_______UUUUUAAG__A__________UUAGA...CAA-5'\n_____________|____________________________|\n_____________41___________________________13\n |
22 -- 28 |
14 -- 20 |
-21.9915 kcal/mol |
4.97788 kcal/mol |
9.20436 kcal/mol |
1 29@LB@ | |@LB@ 5'-C CAGUACA AA UUGCA...UGG-3'@LB@ GCGCUUG GU AUACCAGGA@LB@ ||:|||: || |:|||||||@LB@ CGUGAAU CA UGUGGUCCU@LB@3'-UUU...UUCUU UUUUUAAG A UUAGA...CAA-5'@LB@ | |@LB@ 41 13@LB@@LB@@LB@Energy -7.81 kcal/mol@LB@Hybridization Energy -21.9915 kcal/mol@LB@Unfolding Energy - mRNA 4.97788 kcal/mol@LB@Unfolding Energy - sRNA 9.20436 kcal/mol@LB@@LB@Position - mRNA 2 -- 28@LB@Position - sRNA 14 -- 40@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 14 -- 20@LB@ |
159 |
0.01739 |
0.3504 |
b2426 |
ucpA |
-8.50 |
0.043854 |
215 -- 229 |
36 -- 49 |
furfural resistance protein putative short-chain oxidoreductase |
|
_____________214_____________230\n_____________|_______________|\n5'-GUG...CUCAC________C______GAUUA...UAA-3'\n______________GGGCAAGA_AGCACU\n______________::||||||_||||||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
216 -- 222 |
42 -- 48 |
-19.0239 kcal/mol |
4.4828 kcal/mol |
6.03645 kcal/mol |
214 230@LB@ | |@LB@5'-GUG...CUCAC C GAUUA...UAA-3'@LB@ GGGCAAGA AGCACU@LB@ ::|||||| ||||||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -19.0239 kcal/mol@LB@Unfolding Energy - mRNA 4.4828 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 215 -- 229@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 42 -- 48@LB@ |
14 |
0.0002995 |
0.06692 |
b4195 |
ulaC |
-9.74 |
0.019405 |
182 -- 212 |
24 -- 54 |
L-ascorbate-specific enzyme IIA component of PTS |
|
_____________181_______________________________213\n_____________|_________________________________|\n5'-GCG...CAGGA___G__________C____CAU_______A___GAUUC...UGG-3'\n______________UGU__AAGUAAGGA_GCGC____GAAAUU_CGU\n______________||:__|||:|||:|_||:|____:|||||_|||\n______________ACG__UUCGUUCUU_CGUG____UUUUAA_GCA\n3'-UUU...UUUGA___AA______________AAUU__________AUGUG...CAA-5'\n_____________|_________________________________|\n_____________55________________________________23\n |
187 -- 193 |
42 -- 48 |
-22.0137 kcal/mol |
6.00518 kcal/mol |
6.26866 kcal/mol |
181 213@LB@ | |@LB@5'-GCG...CAGGA G C CAU A GAUUC...UGG-3'@LB@ UGU AAGUAAGGA GCGC GAAAUU CGU@LB@ ||: |||:|||:| ||:| :||||| |||@LB@ ACG UUCGUUCUU CGUG UUUUAA GCA@LB@3'-UUU...UUUGA AA AAUU AUGUG...CAA-5'@LB@ | |@LB@ 55 23@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -22.0137 kcal/mol@LB@Unfolding Energy - mRNA 6.00518 kcal/mol@LB@Unfolding Energy - sRNA 6.26866 kcal/mol@LB@@LB@Position - mRNA 182 -- 212@LB@Position - sRNA 24 -- 54@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 42 -- 48@LB@ |
149 |
0.01515 |
0.3274 |
b4196 |
ulaD |
-9.50 |
0.022893 |
140 -- 153 |
36 -- 49 |
3-keto-L-gulonate 6-phosphate decarboxylase |
|
_____________139____________154\n_____________|______________|\n5'-CGA...GUACC______________GGAUC...AAG-3'\n______________GAGCAGGAAGUACU\n______________:||||:||||:|||\n______________UUCGUUCUUCGUGA\n3'-UUU...ACGAA______________AUUUU...CAA-5'\n_____________|______________|\n_____________50_____________35\n |
147 -- 153 |
36 -- 42 |
-21.0071 kcal/mol |
5.47534 kcal/mol |
6.03645 kcal/mol |
139 154@LB@ | |@LB@5'-CGA...GUACC GGAUC...AAG-3'@LB@ GAGCAGGAAGUACU@LB@ :||||:||||:|||@LB@ UUCGUUCUUCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -21.0071 kcal/mol@LB@Unfolding Energy - mRNA 5.47534 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 140 -- 153@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 36 -- 42@LB@ |
171 |
0.01957 |
0.3668 |
b2498 |
upp |
-5.84 |
0.210430 |
244 -- 265 |
42 -- 61 |
uracil phosphoribosyltransferase |
|
_____________243____________________266\n_____________|______________________|\n5'-GGC...CAAGC_______GA___G_________UAUCA...CCG-3'\n______________UGGGACU__UGC_UGAGCAAGA\n______________||::|||__|||_|:|||||||\n______________ACUUUGA__ACG_AUUCGUUCU\n3'-UUU...GCCCU____________A_________UCGUG...CAA-5'\n_____________|______________________|\n_____________62_____________________41\n |
259 -- 265 |
42 -- 48 |
-21.1169 kcal/mol |
8.03919 kcal/mol |
7.23689 kcal/mol |
243 266@LB@ | |@LB@5'-GGC...CAAGC GA G UAUCA...CCG-3'@LB@ UGGGACU UGC UGAGCAAGA@LB@ ||::||| ||| |:|||||||@LB@ ACUUUGA ACG AUUCGUUCU@LB@3'-UUU...GCCCU A UCGUG...CAA-5'@LB@ | |@LB@ 62 41@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -21.1169 kcal/mol@LB@Unfolding Energy - mRNA 8.03919 kcal/mol@LB@Unfolding Energy - sRNA 7.23689 kcal/mol@LB@@LB@Position - mRNA 244 -- 265@LB@Position - sRNA 42 -- 61@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 42 -- 48@LB@ |