| 119 |
0.006508 |
0.1913 |
b3834 |
ubiJ |
-9.73 |
0.156135 |
145 -- 181 |
28 -- 78 |
aerobic ubiquinone synthesis protein SCP2 family protein |
|
_____________144_________________________________________________182\n_____________|___________________________________________________|\n5'-GCU...AAUCU____G______UUGUGGC_____A___________________________UUCUG...UGG-3'\n______________GACG_CAGGGG_______GCUGC_UCGU______________GGUUAUAAG\n______________:||:_|||||:_______|||||_:|||______________:||||:|||\n______________UUGU_GUCCCU_______CGACG_GGCA______________UCAAUGUUC\n3'-UUU...CGCGG____G______UUAGAAC_____C____UUUAAUAAUACUAC_________CCGUG...GUG-5'\n_____________|___________________________________________________|\n_____________79__________________________________________________27\n |
175 -- 181 |
28 -- 34 |
-33.2852 kcal/mol |
14.1676 kcal/mol |
9.38606 kcal/mol |
144 182@LB@ | |@LB@5'-GCU...AAUCU G UUGUGGC A UUCUG...UGG-3'@LB@ GACG CAGGGG GCUGC UCGU GGUUAUAAG@LB@ :||: |||||: ||||| :||| :||||:|||@LB@ UUGU GUCCCU CGACG GGCA UCAAUGUUC@LB@3'-UUU...CGCGG G UUAGAAC C UUUAAUAAUACUAC CCGUG...GUG-5'@LB@ | |@LB@ 79 27@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -33.2852 kcal/mol@LB@Unfolding Energy - mRNA 14.1676 kcal/mol@LB@Unfolding Energy - sRNA 9.38606 kcal/mol@LB@@LB@Position - mRNA 145 -- 181@LB@Position - sRNA 28 -- 78@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 49 |
0.00252 |
0.1727 |
b3452 |
ugpA |
-14.40 |
0.019328 |
59 -- 78 |
52 -- 70 |
sn-glycerol-3-phosphate ABC transporter permease |
|
_____________58___________________79\n_____________|____________________|\n5'-GAG...AGCGU_______AGUU_________CUUUG...CGG-3'\n______________GGAAAUC____GCUGCGCCG\n______________|||||||____|||||||||\n______________CCUUUAG____CGACGCGGC\n3'-UUU...UGGUC_______AAC__________AUUUA...GUG-5'\n_____________|____________________|\n_____________71___________________51\n |
72 -- 78 |
52 -- 58 |
-27.9409 kcal/mol |
6.69662 kcal/mol |
6.84683 kcal/mol |
58 79@LB@ | |@LB@5'-GAG...AGCGU AGUU CUUUG...CGG-3'@LB@ GGAAAUC GCUGCGCCG@LB@ ||||||| |||||||||@LB@ CCUUUAG CGACGCGGC@LB@3'-UUU...UGGUC AAC AUUUA...GUG-5'@LB@ | |@LB@ 71 51@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -27.9409 kcal/mol@LB@Unfolding Energy - mRNA 6.69662 kcal/mol@LB@Unfolding Energy - sRNA 6.84683 kcal/mol@LB@@LB@Position - mRNA 59 -- 78@LB@Position - sRNA 52 -- 70@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 15 |
0.000767 |
0.1666 |
b2497 |
uraA |
-16.56 |
0.007223 |
161 -- 232 |
28 -- 90 |
uracil permease |
|
_____________160_________________________________________________________________________233\n_____________|___________________________________________________________________________|\n5'-AGC...UUUUU_____AA_____UAU_____AUAAUA___A___U___A__AU_AC________C_____CGG_______GA____ACCGC...UCC-3'\n______________GAGUA__GCGCC___AACAC______CAG_GGA_AAU_CU__G__GCGCCGUG___UAU___GGUGAGU___AAG\n______________||:||__|||||___|||||______|||_|||_|||_||__|__|||||||:___|||___|:|||||___|||\n______________CUUAU__CGCGG___UUGUG______GUC_CCU_UUA_GA__C__CGCGGCAU___AUA___CUACUCA___UUC\n3'-UUU...ACGCG_____GA_________________________________AC_GA________UUA___AUA_______AUG___CCGUG...GUG-5'\n_____________|___________________________________________________________________________|\n_____________91__________________________________________________________________________27\n |
221 -- 227 |
34 -- 40 |
-48.784 kcal/mol |
15.1604 kcal/mol |
17.0677 kcal/mol |
160 233@LB@ | |@LB@5'-AGC...UUUUU AA UAU AUAAUA A U A AU AC C CGG GA ACCGC...UCC-3'@LB@ GAGUA GCGCC AACAC CAG GGA AAU CU G GCGCCGUG UAU GGUGAGU AAG@LB@ ||:|| ||||| ||||| ||| ||| ||| || | |||||||: ||| |:||||| |||@LB@ CUUAU CGCGG UUGUG GUC CCU UUA GA C CGCGGCAU AUA CUACUCA UUC@LB@3'-UUU...ACGCG GA AC GA UUA AUA AUG CCGUG...GUG-5'@LB@ | |@LB@ 91 27@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -48.784 kcal/mol@LB@Unfolding Energy - mRNA 15.1604 kcal/mol@LB@Unfolding Energy - sRNA 17.0677 kcal/mol@LB@@LB@Position - mRNA 161 -- 232@LB@Position - sRNA 28 -- 90@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 57 |
0.002848 |
0.1727 |
b2059 |
wcaA |
-10.75 |
0.100075 |
282 -- 295 |
72 -- 85 |
putative glycosyl transferase |
|
_____________281____________296\n_____________|______________|\n5'-AAC...CGGUU_________G____CAGCA-3'\n______________UUGCGCCAG_ACUA\n______________:|||||||:_||:|\n______________GACGCGGUU_UGGU\n3'-UUU...CUUAU_________G____CCCUU...GUG-5'\n_____________|______________|\n_____________86_____________71\n |
284 -- 290 |
77 -- 83 |
-19.8604 kcal/mol |
1.87274 kcal/mol |
7.23443 kcal/mol |
281 296@LB@ | |@LB@5'-AAC...CGGUU G CAGCA-3'@LB@ UUGCGCCAG ACUA@LB@ :|||||||: ||:|@LB@ GACGCGGUU UGGU@LB@3'-UUU...CUUAU G CCCUU...GUG-5'@LB@ | |@LB@ 86 71@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -19.8604 kcal/mol@LB@Unfolding Energy - mRNA 1.87274 kcal/mol@LB@Unfolding Energy - sRNA 7.23443 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 72 -- 85@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 114 |
0.006011 |
0.1855 |
b0422 |
xseB |
-10.73 |
0.101337 |
104 -- 119 |
73 -- 87 |
exonuclease VII small subunit |
|
_____________103______________120\n_____________|________________|\n5'-CAA...CGCUU________A__U____UUACC...AAG-3'\n______________UGCUGUGC_CA_CACC\n______________|:|||:||_||_||||\n______________AUGACGCG_GU_GUGG\n3'-UUU...CGCUU___________U____UCCCU...GUG-5'\n_____________|________________|\n_____________88_______________72\n |
105 -- 111 |
80 -- 86 |
-20.3088 kcal/mol |
2.628 kcal/mol |
6.95602 kcal/mol |
103 120@LB@ | |@LB@5'-CAA...CGCUU A U UUACC...AAG-3'@LB@ UGCUGUGC CA CACC@LB@ |:|||:|| || ||||@LB@ AUGACGCG GU GUGG@LB@3'-UUU...CGCUU U UCCCU...GUG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -10.73 kcal/mol@LB@Hybridization Energy -20.3088 kcal/mol@LB@Unfolding Energy - mRNA 2.628 kcal/mol@LB@Unfolding Energy - sRNA 6.95602 kcal/mol@LB@@LB@Position - mRNA 104 -- 119@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 199 |
0.0124 |
0.2193 |
b0128 |
yadH |
-9.95 |
0.142385 |
61 -- 79 |
68 -- 88 |
putative ABC transporter permease |
|
_____________60____________________80\n_____________|_____________________|\n5'-UUA...UUGAA_________G___________UCAAC...UCA-3'\n______________GUGCUGCGU_AGCA__GGGGA\n______________:|:|||||:_|:||__:||||\n______________UAUGACGCG_UUGU__UCCCU\n3'-UUU...GCGCU_________G____GG_____UUAGA...GUG-5'\n_____________|_____________________|\n_____________89____________________67\n |
61 -- 67 |
82 -- 88 |
-26.4707 kcal/mol |
9.14335 kcal/mol |
7.38144 kcal/mol |
60 80@LB@ | |@LB@5'-UUA...UUGAA G UCAAC...UCA-3'@LB@ GUGCUGCGU AGCA GGGGA@LB@ :|:|||||: |:|| :||||@LB@ UAUGACGCG UUGU UCCCU@LB@3'-UUU...GCGCU G GG UUAGA...GUG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -9.95 kcal/mol@LB@Hybridization Energy -26.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.14335 kcal/mol@LB@Unfolding Energy - sRNA 7.38144 kcal/mol@LB@@LB@Position - mRNA 61 -- 79@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 24 |
0.001457 |
0.1727 |
b0424 |
yajL |
-16.26 |
0.008266 |
79 -- 97 |
64 -- 86 |
oxidative-stress-resistance chaperone |
|
_____________78______________________98\n_____________|_______________________|\n5'-AGA...CGCGC_______________________GACUA...CCA-3'\n______________GCUGCGCCA_CACU___GAAAUC\n______________:||||||||_|||:___||||||\n______________UGACGCGGU_GUGG___CUUUAG\n3'-UUU...GCUUA_________U____UCC______AACCG...GUG-5'\n_____________|_______________________|\n_____________87______________________63\n |
81 -- 87 |
78 -- 84 |
-26.9283 kcal/mol |
3.28429 kcal/mol |
7.38435 kcal/mol |
78 98@LB@ | |@LB@5'-AGA...CGCGC GACUA...CCA-3'@LB@ GCUGCGCCA CACU GAAAUC@LB@ :|||||||| |||: ||||||@LB@ UGACGCGGU GUGG CUUUAG@LB@3'-UUU...GCUUA U UCC AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -16.26 kcal/mol@LB@Hybridization Energy -26.9283 kcal/mol@LB@Unfolding Energy - mRNA 3.28429 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 79 -- 97@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 78 -- 84@LB@ |
| 58 |
0.002925 |
0.1727 |
b0427 |
yajR |
-11.14 |
0.084219 |
218 -- 238 |
54 -- 78 |
putative transporter |
|
_____________217________________________239\n_____________|__________________________|\n5'-CGU...AAAAU_________U________________GACCU...CGG-3'\n______________GACGCCAGG_GAGA____GGC_GCGC\n______________:||:|||||_||:|____|||_||||\n______________UUGUGGUCC_CUUU____CCG_CGCG\n3'-UUU...CGCGG______________AGAA___A____GCAUU...GUG-5'\n_____________|__________________________|\n_____________79_________________________53\n |
220 -- 226 |
70 -- 76 |
-28.7218 kcal/mol |
8.65047 kcal/mol |
8.92888 kcal/mol |
217 239@LB@ | |@LB@5'-CGU...AAAAU U GACCU...CGG-3'@LB@ GACGCCAGG GAGA GGC GCGC@LB@ :||:||||| ||:| ||| ||||@LB@ UUGUGGUCC CUUU CCG CGCG@LB@3'-UUU...CGCGG AGAA A GCAUU...GUG-5'@LB@ | |@LB@ 79 53@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -28.7218 kcal/mol@LB@Unfolding Energy - mRNA 8.65047 kcal/mol@LB@Unfolding Energy - sRNA 8.92888 kcal/mol@LB@@LB@Position - mRNA 218 -- 238@LB@Position - sRNA 54 -- 78@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 150 |
0.008837 |
0.2059 |
b0453 |
ybaY |
-11.57 |
0.069675 |
268 -- 294 |
71 -- 94 |
outer membrane lipoprotein |
|
_____________267_________________________295\n_____________|___________________________|\n5'-AAG...UAAAA___________CA_A____________CUGCAA-3'\n______________GCGCGGAUAUU__G_CGCCAGCACCGG\n______________|||||:|||:|__|_|||||:||||:|\n______________CGCGCUUAUGA__C_GCGGUUGUGGUC\n3'-UUU...CCCCA___________________________CCUUU...GUG-5'\n_____________|___________________________|\n_____________95__________________________70\n |
283 -- 289 |
76 -- 82 |
-36.9875 kcal/mol |
12.3701 kcal/mol |
13.0144 kcal/mol |
267 295@LB@ | |@LB@5'-AAG...UAAAA CA A CUGCAA-3'@LB@ GCGCGGAUAUU G CGCCAGCACCGG@LB@ |||||:|||:| | |||||:||||:|@LB@ CGCGCUUAUGA C GCGGUUGUGGUC@LB@3'-UUU...CCCCA CCUUU...GUG-5'@LB@ | |@LB@ 95 70@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -36.9875 kcal/mol@LB@Unfolding Energy - mRNA 12.3701 kcal/mol@LB@Unfolding Energy - sRNA 13.0144 kcal/mol@LB@@LB@Position - mRNA 268 -- 294@LB@Position - sRNA 71 -- 94@LB@Position Seed - mRNA 283 -- 289@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 197 |
0.01211 |
0.2164 |
b0495 |
ybbA |
-7.53 |
0.379415 |
88 -- 97 |
1 -- 10 |
putative ABC transporter ATPase |
|
_____________87_________98\n_____________|__________|\n5'-GCC...CAGGC__________UGGCA...UCA-3'\n______________CAGGCCGCGC\n______________||||||||:|\n______________GUCCGGCGUG\n3'-UUU...AAAAA__________-5'\n_____________|_________|\n_____________11________1\n |
91 -- 97 |
1 -- 7 |
-21.6304 kcal/mol |
8.71663 kcal/mol |
5.44172 kcal/mol |
87 98@LB@ | |@LB@5'-GCC...CAGGC UGGCA...UCA-3'@LB@ CAGGCCGCGC@LB@ ||||||||:|@LB@ GUCCGGCGUG@LB@3'-UUU...AAAAA -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -21.6304 kcal/mol@LB@Unfolding Energy - mRNA 8.71663 kcal/mol@LB@Unfolding Energy - sRNA 5.44172 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 1 -- 7@LB@ |
