| 64 |
0.005005 |
0.2614 |
b3795 |
yifK |
-6.27 |
0.531551 |
193 -- 206 |
51 -- 64 |
putative APC family amino acid transporter |
|
_____________192____________207\n_____________|______________|\n5'-CAA...AACAC_______UA_____GAUAA...GGG-3'\n______________GAGGAUU__UGGCA\n______________||::||:__|||||\n______________CUUUUAG__ACCGU\n3'-UUU...ACAAC_______UC_____UACGU...UUG-5'\n_____________|______________|\n_____________65_____________50\n |
193 -- 199 |
58 -- 64 |
-12.618 kcal/mol |
3.46106 kcal/mol |
2.8882 kcal/mol |
192 207@LB@ | |@LB@5'-CAA...AACAC UA GAUAA...GGG-3'@LB@ GAGGAUU UGGCA@LB@ ||::||: |||||@LB@ CUUUUAG ACCGU@LB@3'-UUU...ACAAC UC UACGU...UUG-5'@LB@ | |@LB@ 65 50@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -12.618 kcal/mol@LB@Unfolding Energy - mRNA 3.46106 kcal/mol@LB@Unfolding Energy - sRNA 2.8882 kcal/mol@LB@@LB@Position - mRNA 193 -- 206@LB@Position - sRNA 51 -- 64@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 58 -- 64@LB@ |
| 163 |
0.01899 |
0.3918 |
b0037 |
caiC |
-9.20 |
0.176089 |
195 -- 204 |
42 -- 51 |
putative crotonobetaine/carnitine-CoA ligase |
|
_____________194________205\n_____________|__________|\n5'-CGG...AUAGA__________AUAUC...GAG-3'\n______________GGUGCAAUGG\n______________::||||||||\n______________UUACGUUACC\n3'-UUU...CACCG__________GGGUU...UUG-5'\n_____________|__________|\n_____________52_________41\n |
198 -- 204 |
42 -- 48 |
-13.9036 kcal/mol |
2.50026 kcal/mol |
2.20704 kcal/mol |
194 205@LB@ | |@LB@5'-CGG...AUAGA AUAUC...GAG-3'@LB@ GGUGCAAUGG@LB@ ::||||||||@LB@ UUACGUUACC@LB@3'-UUU...CACCG GGGUU...UUG-5'@LB@ | |@LB@ 52 41@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -13.9036 kcal/mol@LB@Unfolding Energy - mRNA 2.50026 kcal/mol@LB@Unfolding Energy - sRNA 2.20704 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 42 -- 51@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 165 |
0.01953 |
0.3981 |
b0603 |
ybdO |
-12.89 |
0.027143 |
166 -- 206 |
40 -- 73 |
putative DNA-binding transcriptional regulator |
|
_____________165_________________________________________207\n_____________|___________________________________________|\n5'-UCA...GUGAA_____CA_______AAAAUAUAAC___A_______________AAUCU...CAC-3'\n______________UAUAU__UGGAAGA__________CGG__GUAGUGUA_UGGCC\n______________|||||__|||||:|__________|:|__|:|:||:|_|||||\n______________AUAUA__ACCUUUU__________GUC__CGUUACGU_ACCGG\n3'-UUU...GAAAA_____CA_______A____________AC________U_____GUUGU...UUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________39\n |
195 -- 201 |
46 -- 52 |
-24.6879 kcal/mol |
4.92423 kcal/mol |
6.86861 kcal/mol |
165 207@LB@ | |@LB@5'-UCA...GUGAA CA AAAAUAUAAC A AAUCU...CAC-3'@LB@ UAUAU UGGAAGA CGG GUAGUGUA UGGCC@LB@ ||||| |||||:| |:| |:|:||:| |||||@LB@ AUAUA ACCUUUU GUC CGUUACGU ACCGG@LB@3'-UUU...GAAAA CA A AC U GUUGU...UUG-5'@LB@ | |@LB@ 74 39@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -24.6879 kcal/mol@LB@Unfolding Energy - mRNA 4.92423 kcal/mol@LB@Unfolding Energy - sRNA 6.86861 kcal/mol@LB@@LB@Position - mRNA 166 -- 206@LB@Position - sRNA 40 -- 73@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 101 |
0.009525 |
0.3118 |
b2101 |
yegW |
-12.09 |
0.042153 |
47 -- 73 |
39 -- 66 |
putative DNA-binding transcriptional regulator |
|
_____________46____________________________74\n_____________|_____________________________|\n5'-CGG...GACCG____CAGG___A_____U___________GGUGG...AAA-3'\n______________UGGA____UAG_UGGCA___CAAUGGUCC\n______________||||____:||_|||||___||||||:||\n______________ACCU____GUC_ACCGU___GUUACCGGG\n3'-UUU...AUACA____UUUA_________UAC_________UUGUC...UUG-5'\n_____________|_____________________________|\n_____________67____________________________38\n |
67 -- 73 |
39 -- 45 |
-28.0375 kcal/mol |
9.27172 kcal/mol |
6.67256 kcal/mol |
46 74@LB@ | |@LB@5'-CGG...GACCG CAGG A U GGUGG...AAA-3'@LB@ UGGA UAG UGGCA CAAUGGUCC@LB@ |||| :|| ||||| ||||||:||@LB@ ACCU GUC ACCGU GUUACCGGG@LB@3'-UUU...AUACA UUUA UAC UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -28.0375 kcal/mol@LB@Unfolding Energy - mRNA 9.27172 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 47 -- 73@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 142 |
0.01646 |
0.3828 |
b2248 |
rhmR |
-12.12 |
0.041559 |
199 -- 228 |
39 -- 72 |
putative DNA-binding transcriptional regulator for the rhm operon |
b4299 |
_____________198________________________________229\n_____________|__________________________________|\n5'-UUU...GUCCA________________A______A__UCCC____UGACA...ACA-3'\n______________GUAUGUUGGA__AUCA___GCAA_GU____GCCC\n______________:|||||||||__||||___||||_|:____||||\n______________UAUACAACCU__UAGU___CGUU_CG____CGGG\n3'-UUU...AAAAA__________UU____CAC____A__UUAC____UUGUC...UUG-5'\n_____________|__________________________________|\n_____________73_________________________________38\n |
202 -- 208 |
63 -- 69 |
-27.9384 kcal/mol |
8.52428 kcal/mol |
7.29447 kcal/mol |
198 229@LB@ | |@LB@5'-UUU...GUCCA A A UCCC UGACA...ACA-3'@LB@ GUAUGUUGGA AUCA GCAA GU GCCC@LB@ :||||||||| |||| |||| |: ||||@LB@ UAUACAACCU UAGU CGUU CG CGGG@LB@3'-UUU...AAAAA UU CAC A UUAC UUGUC...UUG-5'@LB@ | |@LB@ 73 38@LB@@LB@@LB@Energy -12.12 kcal/mol@LB@Hybridization Energy -27.9384 kcal/mol@LB@Unfolding Energy - mRNA 8.52428 kcal/mol@LB@Unfolding Energy - sRNA 7.29447 kcal/mol@LB@@LB@Position - mRNA 199 -- 228@LB@Position - sRNA 39 -- 72@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 128 |
0.01375 |
0.3614 |
b1271 |
yciK |
-9.18 |
0.177475 |
2 -- 35 |
4 -- 52 |
putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase |
|
_____________1_________________________________________________36\n_____________|_________________________________________________|\n__________5'-A___C__UU___________UUU________________C__________UAAGC...CAC-3'\n______________CAA_GC__UGGCUC_ACAG_______________ACAA___AGGCAUGU\n______________|||_||__||||:|_||||_______________||||___||||||:|\n______________GUU_CG__ACCGGG_UGUC_______________UGUU___UCCGUAUA\n3'-UUU...UCACC___A__UU______U____UUUUAUUUUAGACAC____AUU________UUG-5'\n_____________|_________________________________________________|\n_____________53________________________________________________3\n |
29 -- 35 |
4 -- 10 |
-28.8633 kcal/mol |
7.6461 kcal/mol |
12.0385 kcal/mol |
1 36@LB@ | |@LB@ 5'-A C UU UUU C UAAGC...CAC-3'@LB@ CAA GC UGGCUC ACAG ACAA AGGCAUGU@LB@ ||| || ||||:| |||| |||| ||||||:|@LB@ GUU CG ACCGGG UGUC UGUU UCCGUAUA@LB@3'-UUU...UCACC A UU U UUUUAUUUUAGACAC AUU UUG-5'@LB@ | |@LB@ 53 3@LB@@LB@@LB@Energy -9.18 kcal/mol@LB@Hybridization Energy -28.8633 kcal/mol@LB@Unfolding Energy - mRNA 7.6461 kcal/mol@LB@Unfolding Energy - sRNA 12.0385 kcal/mol@LB@@LB@Position - mRNA 2 -- 35@LB@Position - sRNA 4 -- 52@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 139 |
0.0159 |
0.3828 |
b2108 |
yehA |
-9.84 |
0.131393 |
50 -- 60 |
55 -- 65 |
putative fimbrial-like adhesin protein |
|
_____________49__________61\n_____________|___________|\n5'-GUU...GGCCA___________UAUUU...UUG-3'\n______________GGGAAGUCAGU\n______________||:||:|||||\n______________CCUUUUAGUCA\n3'-UUU...UACAA___________CCGUU...UUG-5'\n_____________|___________|\n_____________66__________54\n |
54 -- 60 |
55 -- 61 |
-13.8721 kcal/mol |
3.08221 kcal/mol |
0.952476 kcal/mol |
49 61@LB@ | |@LB@5'-GUU...GGCCA UAUUU...UUG-3'@LB@ GGGAAGUCAGU@LB@ ||:||:|||||@LB@ CCUUUUAGUCA@LB@3'-UUU...UACAA CCGUU...UUG-5'@LB@ | |@LB@ 66 54@LB@@LB@@LB@Energy -9.84 kcal/mol@LB@Hybridization Energy -13.8721 kcal/mol@LB@Unfolding Energy - mRNA 3.08221 kcal/mol@LB@Unfolding Energy - sRNA 0.952476 kcal/mol@LB@@LB@Position - mRNA 50 -- 60@LB@Position - sRNA 55 -- 65@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 70 |
0.005852 |
0.2791 |
b3524 |
yhjG |
-5.99 |
0.576071 |
198 -- 212 |
7 -- 18 |
putative inner membrane-anchored periplasmic AsmA family protein |
|
_____________197_____________213\n_____________|_______________|\n5'-UUG...AGCGA_______GCA_____GGCAA...GAC-3'\n______________ACGAUGA___AGGCA\n______________||:||:|___|||||\n______________UGUUAUU___UCCGU\n3'-UUU...GACAC_______________AUAUUG-5'\n_____________|_______________|\n_____________19______________6\n |
198 -- 204 |
12 -- 18 |
-10.9915 kcal/mol |
1.73561 kcal/mol |
3.26755 kcal/mol |
197 213@LB@ | |@LB@5'-UUG...AGCGA GCA GGCAA...GAC-3'@LB@ ACGAUGA AGGCA@LB@ ||:||:| |||||@LB@ UGUUAUU UCCGU@LB@3'-UUU...GACAC AUAUUG-5'@LB@ | |@LB@ 19 6@LB@@LB@@LB@Energy -5.99 kcal/mol@LB@Hybridization Energy -10.9915 kcal/mol@LB@Unfolding Energy - mRNA 1.73561 kcal/mol@LB@Unfolding Energy - sRNA 3.26755 kcal/mol@LB@@LB@Position - mRNA 198 -- 212@LB@Position - sRNA 7 -- 18@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 151 |
0.01786 |
0.3828 |
b0412 |
yajI |
-11.20 |
0.067280 |
41 -- 55 |
41 -- 54 |
putative lipoprotein |
|
_____________40______________56\n_____________|_______________|\n5'-CGA...GAAUG_________UAC___GUCCU...UCA-3'\n______________GGCAAUGCA___GGC\n______________|||||||||___|||\n______________CCGUUACGU___CCG\n3'-UUU...AGUCA_________UA____GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
43 -- 49 |
46 -- 52 |
-19.8433 kcal/mol |
4.75092 kcal/mol |
3.89026 kcal/mol |
40 56@LB@ | |@LB@5'-CGA...GAAUG UAC GUCCU...UCA-3'@LB@ GGCAAUGCA GGC@LB@ ||||||||| |||@LB@ CCGUUACGU CCG@LB@3'-UUU...AGUCA UA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -19.8433 kcal/mol@LB@Unfolding Energy - mRNA 4.75092 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 41 -- 55@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 194 |
0.0246 |
0.4256 |
b0211 |
mltD |
-5.59 |
0.639593 |
30 -- 36 |
59 -- 65 |
putative membrane-bound lytic murein transglycosylase D |
|
_____________29______37\n_____________|_______|\n5'-GAG...AGAAC_______AUUGA...GUC-3'\n______________GGAAGAU\n______________||||:||\n______________CCUUUUA\n3'-UUU...UACAA_______GUCAC...UUG-5'\n_____________|_______|\n_____________66______58\n |
30 -- 36 |
59 -- 65 |
-7.35578 kcal/mol |
0.945124 kcal/mol |
0.81955 kcal/mol |
29 37@LB@ | |@LB@5'-GAG...AGAAC AUUGA...GUC-3'@LB@ GGAAGAU@LB@ ||||:||@LB@ CCUUUUA@LB@3'-UUU...UACAA GUCAC...UUG-5'@LB@ | |@LB@ 66 58@LB@@LB@@LB@Energy -5.59 kcal/mol@LB@Hybridization Energy -7.35578 kcal/mol@LB@Unfolding Energy - mRNA 0.945124 kcal/mol@LB@Unfolding Energy - sRNA 0.81955 kcal/mol@LB@@LB@Position - mRNA 30 -- 36@LB@Position - sRNA 59 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 59 -- 65@LB@ |
