194 |
0.02335 |
0.3864 |
b4182 |
yjfJ |
-9.08 |
0.030148 |
209 -- 238 |
10 -- 37 |
PspA/IM30 family protein |
|
_____________208____________________________239\n_____________|______________________________|\n5'-GAA...GGAAU____________AU______UG________GUUUA...AGC-3'\n______________UUUAAAAAGUUU__UUACGC__GGGAAAUC\n______________:|||||||:||:__||||:|__:|||||||\n______________GAAUUUUUUAAG__AAUGUG__UCCUUUAG\n3'-UUU...UUCGU____________C_______G_________ACUAC...CAA-5'\n_____________|______________________________|\n_____________38_____________________________9\n |
232 -- 238 |
10 -- 16 |
-23.4786 kcal/mol |
5.49388 kcal/mol |
8.90309 kcal/mol |
208 239@LB@ | |@LB@5'-GAA...GGAAU AU UG GUUUA...AGC-3'@LB@ UUUAAAAAGUUU UUACGC GGGAAAUC@LB@ :|||||||:||: ||||:| :|||||||@LB@ GAAUUUUUUAAG AAUGUG UCCUUUAG@LB@3'-UUU...UUCGU C G ACUAC...CAA-5'@LB@ | |@LB@ 38 9@LB@@LB@@LB@Energy -9.08 kcal/mol@LB@Hybridization Energy -23.4786 kcal/mol@LB@Unfolding Energy - mRNA 5.49388 kcal/mol@LB@Unfolding Energy - sRNA 8.90309 kcal/mol@LB@@LB@Position - mRNA 209 -- 238@LB@Position - sRNA 10 -- 37@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 10 -- 16@LB@ |
176 |
0.02022 |
0.37 |
b0495 |
ybbA |
-5.55 |
0.244939 |
212 -- 247 |
24 -- 59 |
putative ABC transporter ATPase |
|
_____________211___________________________________248\n_____________|_____________________________________|\n5'-GCC...GCGGA____A_____G____UCAUCAU___________C___CGGUC...UCA-3'\n______________AAAC_UUGUU_AAGU________CUUAAGAAGU_CGU\n______________||||_|||:|_|||:________|||||:||:|_|||\n______________UUUG_AACGA_UUCG________GAAUUUUUUA_GCA\n3'-UUU...CCUAC__________A____UUCUUCGU__________A___AUGUG...CAA-5'\n_____________|_____________________________________|\n_____________60____________________________________23\n |
235 -- 241 |
30 -- 36 |
-18.4731 kcal/mol |
6.64875 kcal/mol |
6.27609 kcal/mol |
211 248@LB@ | |@LB@5'-GCC...GCGGA A G UCAUCAU C CGGUC...UCA-3'@LB@ AAAC UUGUU AAGU CUUAAGAAGU CGU@LB@ |||| |||:| |||: |||||:||:| |||@LB@ UUUG AACGA UUCG GAAUUUUUUA GCA@LB@3'-UUU...CCUAC A UUCUUCGU A AUGUG...CAA-5'@LB@ | |@LB@ 60 23@LB@@LB@@LB@Energy -5.55 kcal/mol@LB@Hybridization Energy -18.4731 kcal/mol@LB@Unfolding Energy - mRNA 6.64875 kcal/mol@LB@Unfolding Energy - sRNA 6.27609 kcal/mol@LB@@LB@Position - mRNA 212 -- 247@LB@Position - sRNA 24 -- 59@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 30 -- 36@LB@ |
7 |
4.438e-05 |
0.02042 |
b0794 |
ybhF |
-10.77 |
0.009494 |
150 -- 165 |
11 -- 26 |
putative ABC transporter ATPase |
|
_____________149______________166\n_____________|________________|\n5'-UAC...UGAUG________________GCCAG...GUU-3'\n______________CGUUACGCCAGGGAAU\n______________||||||:|||||:|||\n______________GCAAUGUGGUCCUUUA\n3'-UUU...UUUAA________________GACUA...CAA-5'\n_____________|________________|\n_____________27_______________10\n |
157 -- 163 |
13 -- 19 |
-25.1629 kcal/mol |
6.0475 kcal/mol |
8.34814 kcal/mol |
149 166@LB@ | |@LB@5'-UAC...UGAUG GCCAG...GUU-3'@LB@ CGUUACGCCAGGGAAU@LB@ ||||||:|||||:|||@LB@ GCAAUGUGGUCCUUUA@LB@3'-UUU...UUUAA GACUA...CAA-5'@LB@ | |@LB@ 27 10@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -25.1629 kcal/mol@LB@Unfolding Energy - mRNA 6.0475 kcal/mol@LB@Unfolding Energy - sRNA 8.34814 kcal/mol@LB@@LB@Position - mRNA 150 -- 165@LB@Position - sRNA 11 -- 26@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 13 -- 19@LB@ |
33 |
0.001071 |
0.1045 |
b2058 |
wcaB |
-10.41 |
0.012241 |
46 -- 64 |
25 -- 42 |
putative acyl transferase |
|
_____________45__________________65\n_____________|___________________|\n5'-ACC...ACCGC______AA___C_______ACCGC...AGA-3'\n______________AAGCAC__AGA_AAAUUCG\n______________||||||__|:|_|||||||\n______________UUCGUG__UUU_UUUAAGC\n3'-UUU...CGUUC______AA___________AAUGU...CAA-5'\n_____________|___________________|\n_____________43__________________24\n |
58 -- 64 |
25 -- 31 |
-12.8013 kcal/mol |
0.745291 kcal/mol |
1.64855 kcal/mol |
45 65@LB@ | |@LB@5'-ACC...ACCGC AA C ACCGC...AGA-3'@LB@ AAGCAC AGA AAAUUCG@LB@ |||||| |:| |||||||@LB@ UUCGUG UUU UUUAAGC@LB@3'-UUU...CGUUC AA AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -12.8013 kcal/mol@LB@Unfolding Energy - mRNA 0.745291 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 46 -- 64@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 25 -- 31@LB@ |
170 |
0.01916 |
0.363 |
b1202 |
ycgV |
-6.78 |
0.125661 |
82 -- 88 |
39 -- 45 |
putative adhesin |
b2647 |
_____________81______89\n_____________|_______|\n5'-ACU...UCUCU_______UCAUC...UUG-3'\n______________GAGAAGC\n______________:||||||\n______________UUCUUCG\n3'-UUU...AUUCG_______UGAAU...CAA-5'\n_____________|_______|\n_____________46______38\n |
82 -- 88 |
39 -- 45 |
-7.60605 kcal/mol |
0.31609 kcal/mol |
0.514773 kcal/mol |
81 89@LB@ | |@LB@5'-ACU...UCUCU UCAUC...UUG-3'@LB@ GAGAAGC@LB@ :||||||@LB@ UUCUUCG@LB@3'-UUU...AUUCG UGAAU...CAA-5'@LB@ | |@LB@ 46 38@LB@@LB@@LB@Energy -6.78 kcal/mol@LB@Hybridization Energy -7.60605 kcal/mol@LB@Unfolding Energy - mRNA 0.31609 kcal/mol@LB@Unfolding Energy - sRNA 0.514773 kcal/mol@LB@@LB@Position - mRNA 82 -- 88@LB@Position - sRNA 39 -- 45@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 39 -- 45@LB@ |
84 |
0.005596 |
0.2146 |
b4065 |
yjcE |
-5.39 |
0.265673 |
197 -- 210 |
9 -- 22 |
putative cation/proton antiporter |
|
_____________196____________211\n_____________|______________|\n5'-UAU...AGGGA____AU________UCUUC...UGC-3'\n______________ACGC__GGAAAUCU\n______________||:|__||||||||\n______________UGUG__CCUUUAGA\n3'-UUU...AGCAA____GU________CUACACAA-5'\n_____________|______________|\n_____________23_____________8\n |
203 -- 209 |
10 -- 16 |
-15.8377 kcal/mol |
2.89158 kcal/mol |
7.5588 kcal/mol |
196 211@LB@ | |@LB@5'-UAU...AGGGA AU UCUUC...UGC-3'@LB@ ACGC GGAAAUCU@LB@ ||:| ||||||||@LB@ UGUG CCUUUAGA@LB@3'-UUU...AGCAA GU CUACACAA-5'@LB@ | |@LB@ 23 8@LB@@LB@@LB@Energy -5.39 kcal/mol@LB@Hybridization Energy -15.8377 kcal/mol@LB@Unfolding Energy - mRNA 2.89158 kcal/mol@LB@Unfolding Energy - sRNA 7.5588 kcal/mol@LB@@LB@Position - mRNA 197 -- 210@LB@Position - sRNA 9 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 10 -- 16@LB@ |
59 |
0.003153 |
0.1645 |
b1220 |
ychO |
-8.71 |
0.038404 |
242 -- 262 |
37 -- 56 |
putative invasin |
|
_____________241___________________263\n_____________|_____________________|\n5'-UCA...UUACU________U______C_____AGCUA...CAA-3'\n______________CUUGCUUG_AGCAGG_GGUAC\n______________|||||||:_||||:|_:|:||\n______________GAACGAAU_UCGUUC_UCGUG\n3'-UUU...ACUUU_______________U_____AAUUU...CAA-5'\n_____________|_____________________|\n_____________57____________________36\n |
242 -- 248 |
50 -- 56 |
-24.8668 kcal/mol |
9.95535 kcal/mol |
6.20049 kcal/mol |
241 263@LB@ | |@LB@5'-UCA...UUACU U C AGCUA...CAA-3'@LB@ CUUGCUUG AGCAGG GGUAC@LB@ |||||||: ||||:| :|:||@LB@ GAACGAAU UCGUUC UCGUG@LB@3'-UUU...ACUUU U AAUUU...CAA-5'@LB@ | |@LB@ 57 36@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -24.8668 kcal/mol@LB@Unfolding Energy - mRNA 9.95535 kcal/mol@LB@Unfolding Energy - sRNA 6.20049 kcal/mol@LB@@LB@Position - mRNA 242 -- 262@LB@Position - sRNA 37 -- 56@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 50 -- 56@LB@ |
160 |
0.01746 |
0.3504 |
b4542 |
yohO |
-11.65 |
0.004993 |
133 -- 150 |
23 -- 41 |
putative membrane protein |
|
_____________132_________________151\n_____________|___________________|\n5'-UCG...CACUC_________U_________AACAA...GUG-3'\n______________GGCAUUUAA__GAUUCGUU\n______________:|||:||||__:|||||||\n______________UCGUGAAUU__UUAAGCAA\n3'-UUU...GUUCU_________UU________UGUGG...CAA-5'\n_____________|___________________|\n_____________42__________________22\n |
144 -- 150 |
23 -- 29 |
-16.4387 kcal/mol |
3.13759 kcal/mol |
1.64896 kcal/mol |
132 151@LB@ | |@LB@5'-UCG...CACUC U AACAA...GUG-3'@LB@ GGCAUUUAA GAUUCGUU@LB@ :|||:|||| :|||||||@LB@ UCGUGAAUU UUAAGCAA@LB@3'-UUU...GUUCU UU UGUGG...CAA-5'@LB@ | |@LB@ 42 22@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -16.4387 kcal/mol@LB@Unfolding Energy - mRNA 3.13759 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 133 -- 150@LB@Position - sRNA 23 -- 41@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 23 -- 29@LB@ |
52 |
0.002466 |
0.1527 |
b3527 |
yhjJ |
-8.40 |
0.046956 |
207 -- 220 |
25 -- 41 |
putative periplasmic M16 family chaperone |
|
_____________206_______________221\n_____________|_________________|\n5'-CUC...UGCAG_________________ACUUU...GGC-3'\n______________GGCAC___AAAAAUUCG\n______________:||||___|||||||||\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
214 -- 220 |
25 -- 31 |
-13.4116 kcal/mol |
3.36563 kcal/mol |
1.64839 kcal/mol |
206 221@LB@ | |@LB@5'-CUC...UGCAG ACUUU...GGC-3'@LB@ GGCAC AAAAAUUCG@LB@ :|||| |||||||||@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -13.4116 kcal/mol@LB@Unfolding Energy - mRNA 3.36563 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 207 -- 220@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 25 -- 31@LB@ |
144 |
0.01453 |
0.3231 |
b3614 |
yibQ |
-4.49 |
0.404320 |
261 -- 267 |
34 -- 40 |
putative polysaccharide deacetylase |
|
_____________260_____268\n_____________|_______|\n5'-UGG...CCCCC_______CUGGC...UUG-3'\n______________GUACUUG\n______________|:||||:\n______________CGUGAAU\n3'-UUU...UUCUU_______UUUUU...CAA-5'\n_____________|_______|\n_____________41______33\n |
261 -- 267 |
34 -- 40 |
-7.10274 kcal/mol |
0.998159 kcal/mol |
1.61352 kcal/mol |
260 268@LB@ | |@LB@5'-UGG...CCCCC CUGGC...UUG-3'@LB@ GUACUUG@LB@ |:||||:@LB@ CGUGAAU@LB@3'-UUU...UUCUU UUUUU...CAA-5'@LB@ | |@LB@ 41 33@LB@@LB@@LB@Energy -4.49 kcal/mol@LB@Hybridization Energy -7.10274 kcal/mol@LB@Unfolding Energy - mRNA 0.998159 kcal/mol@LB@Unfolding Energy - sRNA 1.61352 kcal/mol@LB@@LB@Position - mRNA 261 -- 267@LB@Position - sRNA 34 -- 40@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 34 -- 40@LB@ |