| 93 |
0.004254 |
0.1596 |
stm0408 |
secF |
-18.22 |
0.034847 |
7 -- 64 |
39 -- 91 |
protein-export membrane protein SecF |
|
_____________6______________________________________65\n_____________|______________________________________|\n5'-CUU...GCACA_G__U____UGUUG______UA________________AGUCU...UGC-3'\n______________G_AA_ACAC_____AACAAC__AAC__CACGGCCGUAA\n______________|_||_||||_____||||||__|||__|||::||||||\n______________C_UU_UGUG_____UUGUUG__UUG__GUGUUGGCAUU\n3'-UUU...GUUAA_G__________________UG___UA___________CGGUU...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________38\n |
238 -- 244 |
59 -- 65 |
-26.2573 kcal/mol |
3.95572 kcal/mol |
10.1648 kcal/mol |
6 65@LB@ | |@LB@5'-CUU...GCACA G U UGUUG UA AGUCU...UGC-3'@LB@ G AA ACAC AACAAC AAC CACGGCCGUAA@LB@ | || |||| |||||| ||| |||::||||||@LB@ C UU UGUG UUGUUG UUG GUGUUGGCAUU@LB@3'-UUU...GUUAA G UG UA CGGUU...UCA-5'@LB@ | |@LB@ 92 38@LB@@LB@@LB@Energy -18.22 kcal/mol@LB@Hybridization Energy -26.2573 kcal/mol@LB@Unfolding Energy - mRNA 3.95572 kcal/mol@LB@Unfolding Energy - sRNA 10.1648 kcal/mol@LB@@LB@Position - mRNA 7 -- 64@LB@Position - sRNA 39 -- 91@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 140 |
0.007169 |
0.182 |
stm3126 |
N/A |
-18.02 |
0.037639 |
66 -- 114 |
39 -- 91 |
putative amino acid transporter |
|
_____________65_______________________________115\n_____________|________________________________|\n5'-AUU...GCGCA______G______U___________UU_____UAUCC...UGA-3'\n______________UGCGGG_ACGGCG_CACAACGUUAU__ACCGU\n______________|||:::_||::|:_||||||:|:|:__|||||\n______________ACGUUU_UGUUGU_GUGUUGUAGUG__UGGCA\n3'-UUU...GGUUA______G______U___________U______UUCGG...UCA-5'\n_____________|________________________________|\n_____________92_______________________________38\n |
82 -- 88 |
69 -- 75 |
-33.8851 kcal/mol |
10.4253 kcal/mol |
9.42541 kcal/mol |
65 115@LB@ | |@LB@5'-AUU...GCGCA G U UU UAUCC...UGA-3'@LB@ UGCGGG ACGGCG CACAACGUUAU ACCGU@LB@ |||::: ||::|: ||||||:|:|: |||||@LB@ ACGUUU UGUUGU GUGUUGUAGUG UGGCA@LB@3'-UUU...GGUUA G U U UUCGG...UCA-5'@LB@ | |@LB@ 92 38@LB@@LB@@LB@Energy -18.02 kcal/mol@LB@Hybridization Energy -33.8851 kcal/mol@LB@Unfolding Energy - mRNA 10.4253 kcal/mol@LB@Unfolding Energy - sRNA 9.42541 kcal/mol@LB@@LB@Position - mRNA 66 -- 114@LB@Position - sRNA 39 -- 91@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 125 |
0.006333 |
0.1774 |
stm3094 |
yggJ |
-12.37 |
0.297521 |
35 -- 55 |
69 -- 89 |
putative cytoplasmic protein |
|
_____________34____________________56\n_____________|_____________________|\n5'-GCG...GCCAA__________UUUU_______UGGGA...AGA-3'\n______________CAAACGCAGC____UAACGUC\n______________|||||:||:|____:|||:||\n______________GUUUGUGUUG____GUUGUAG\n3'-UUU...UUAAC__________UUGU_______UGUUG...UCA-5'\n_____________|_____________________|\n_____________90____________________68\n |
49 -- 55 |
69 -- 75 |
-19.7914 kcal/mol |
1.34113 kcal/mol |
4.32311 kcal/mol |
34 56@LB@ | |@LB@5'-GCG...GCCAA UUUU UGGGA...AGA-3'@LB@ CAAACGCAGC UAACGUC@LB@ |||||:||:| :|||:||@LB@ GUUUGUGUUG GUUGUAG@LB@3'-UUU...UUAAC UUGU UGUUG...UCA-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -19.7914 kcal/mol@LB@Unfolding Energy - mRNA 1.34113 kcal/mol@LB@Unfolding Energy - sRNA 4.32311 kcal/mol@LB@@LB@Position - mRNA 35 -- 55@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 69 -- 75@LB@ |
| 34 |
0.001111 |
0.1164 |
stm2746 |
N/A |
-14.94 |
0.120804 |
53 -- 101 |
36 -- 90 |
putative excinuclease ATPase subunit |
stm4494 stm3753 |
_____________52_____________________102\n_____________|______________________|\n5'-GGA...UUGAA____UA_________U______UCAAG...AUG-3'\n______________GCAA__ACAACAACG__ACAUU\n______________||||__||||||||:__||||:\n______________CGUU__UGUUGUUGU__UGUAG\n3'-UUU...GUUAA____UG_________GU_____UGUUG...UCA-5'\n_____________|______________________|\n_____________91_____________________35\n |
61 -- 67 |
76 -- 82 |
-20.4267 kcal/mol |
3.3222 kcal/mol |
4.33922 kcal/mol |
52 102@LB@ | |@LB@5'-GGA...UUGAA UA U UCAAG...AUG-3'@LB@ GCAA ACAACAACG ACAUU@LB@ |||| ||||||||: ||||:@LB@ CGUU UGUUGUUGU UGUAG@LB@3'-UUU...GUUAA UG GU UGUUG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -14.94 kcal/mol@LB@Hybridization Energy -20.4267 kcal/mol@LB@Unfolding Energy - mRNA 3.3222 kcal/mol@LB@Unfolding Energy - sRNA 4.33922 kcal/mol@LB@@LB@Position - mRNA 53 -- 101@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 76 -- 82@LB@ |
| 123 |
0.006073 |
0.1758 |
stm4355 |
yjeS |
-17.69 |
0.042665 |
80 -- 140 |
31 -- 90 |
putative Fe-S protein |
|
_____________79______________________________141\n_____________|_______________________________|\n_______5'-CGUU______________C________________AGUGU...UUA-3'\n______________GUUGC___CAUGAC_ACACAACA_C_CAGCC\n______________:||||___||::||_||||||||_|_||:||\n______________UAACG___GUGUUG_UGUGUUGU_G_GUUGG\n3'-UUU...CUGGU_____UUU______U________A_U_____CAUUC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________30\n |
18 -- 24 |
71 -- 77 |
-27.2663 kcal/mol |
5.13395 kcal/mol |
8.62086 kcal/mol |
79 141@LB@ | |@LB@ 5'-CGUU C AGUGU...UUA-3'@LB@ GUUGC CAUGAC ACACAACA C CAGCC@LB@ :|||| ||::|| |||||||| | ||:||@LB@ UAACG GUGUUG UGUGUUGU G GUUGG@LB@3'-UUU...CUGGU UUU U A U CAUUC...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -27.2663 kcal/mol@LB@Unfolding Energy - mRNA 5.13395 kcal/mol@LB@Unfolding Energy - sRNA 8.62086 kcal/mol@LB@@LB@Position - mRNA 80 -- 140@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 144 |
0.00736 |
0.182 |
stm4559 |
yjjG |
-11.80 |
0.356804 |
189 -- 218 |
128 -- 159 |
putative haloacid dehalogenase-like hydrolase |
|
_____________188_________________________________219\n_____________|___________________________________|\n5'-UUG...AUAAA_G_____A____U__________________CU__AUUUU...UCA-3'\n______________A_AGGCA_GGUG_AAUG_AU__GAAGUGGGA__GG\n______________|_||:||_|||:_||||_|:__||||||::|__||\n______________U_UCUGU_CCAU_UUAC_UG__CUUCACUUU__CC\n3'-UUU...AUACC_G_____C_________A__UC_________UU__CAUCA...UCA-5'\n_____________|___________________________________|\n_____________160_________________________________127\n |
208 -- 214 |
132 -- 138 |
-24.694 kcal/mol |
5.33554 kcal/mol |
7.83417 kcal/mol |
188 219@LB@ | |@LB@5'-UUG...AUAAA G A U CU AUUUU...UCA-3'@LB@ A AGGCA GGUG AAUG AU GAAGUGGGA GG@LB@ | ||:|| |||: |||| |: ||||||::| ||@LB@ U UCUGU CCAU UUAC UG CUUCACUUU CC@LB@3'-UUU...AUACC G C A UC UU CAUCA...UCA-5'@LB@ | |@LB@ 160 127@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -24.694 kcal/mol@LB@Unfolding Energy - mRNA 5.33554 kcal/mol@LB@Unfolding Energy - sRNA 7.83417 kcal/mol@LB@@LB@Position - mRNA 189 -- 218@LB@Position - sRNA 128 -- 159@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 132 -- 138@LB@ |
| 51 |
0.001912 |
0.1324 |
stm2692 |
N/A |
-10.31 |
0.546971 |
162 -- 173 |
130 -- 141 |
putative HlyD family secretion protein |
|
_____________161__________174\n_____________|____________|\n5'-GUU...CCGUC____________AUGAA...CGU-3'\n______________GGGAGUGGAAAA\n______________||:||||:||||\n______________CCUUCACUUUUU\n3'-UUU...CAUGU____________CCCAU...UCA-5'\n_____________|____________|\n_____________142__________129\n |
166 -- 172 |
131 -- 137 |
-15.3652 kcal/mol |
2.02429 kcal/mol |
2.83702 kcal/mol |
161 174@LB@ | |@LB@5'-GUU...CCGUC AUGAA...CGU-3'@LB@ GGGAGUGGAAAA@LB@ ||:||||:||||@LB@ CCUUCACUUUUU@LB@3'-UUU...CAUGU CCCAU...UCA-5'@LB@ | |@LB@ 142 129@LB@@LB@@LB@Energy -10.31 kcal/mol@LB@Hybridization Energy -15.3652 kcal/mol@LB@Unfolding Energy - mRNA 2.02429 kcal/mol@LB@Unfolding Energy - sRNA 2.83702 kcal/mol@LB@@LB@Position - mRNA 162 -- 173@LB@Position - sRNA 130 -- 141@LB@Position Seed - mRNA 166 -- 172@LB@Position Seed - sRNA 131 -- 137@LB@ |
| 32 |
0.001017 |
0.1132 |
stm1874 |
N/A |
-30.35 |
0.000300 |
5 -- 53 |
36 -- 83 |
putative inner membrane protein |
|
_____________4__________________________________________________54\n_____________|__________________________________________________|\n_______5'-GGUU___________C______U____CUC________________A_______CCGGC...CCG-3'\n______________CAGCGGCGCAA_CAUUAC_GGCC___AG_CAAGAGCUCAUCA_AACGCGC\n______________||:|::|:|||_|||:||_::||___||_|||:|||:|||||_|||:|||\n______________GUUGUUGUGUU_GUAGUG_UUGG___UC_GUUUUCGGGUAGU_UUGUGCG\n3'-UUU...UUUGU_______________________CAU__G_____________C_______UAAGG...UCA-5'\n_____________|__________________________________________________|\n_____________84_________________________________________________35\n |
47 -- 53 |
36 -- 42 |
-54.7325 kcal/mol |
11.1988 kcal/mol |
22.0738 kcal/mol |
4 54@LB@ | |@LB@ 5'-GGUU C U CUC A CCGGC...CCG-3'@LB@ CAGCGGCGCAA CAUUAC GGCC AG CAAGAGCUCAUCA AACGCGC@LB@ ||:|::|:||| |||:|| ::|| || |||:|||:||||| |||:|||@LB@ GUUGUUGUGUU GUAGUG UUGG UC GUUUUCGGGUAGU UUGUGCG@LB@3'-UUU...UUUGU CAU G C UAAGG...UCA-5'@LB@ | |@LB@ 84 35@LB@@LB@@LB@Energy -30.35 kcal/mol@LB@Hybridization Energy -54.7325 kcal/mol@LB@Unfolding Energy - mRNA 11.1988 kcal/mol@LB@Unfolding Energy - sRNA 22.0738 kcal/mol@LB@@LB@Position - mRNA 5 -- 53@LB@Position - sRNA 36 -- 83@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 164 |
0.008796 |
0.191 |
stm2932 |
ygbE |
-13.54 |
0.199482 |
240 -- 279 |
44 -- 82 |
putative inner membrane protein |
|
_____________239________________280\n_____________|__________________|\n5'-CGC...GCGUA__________________UUUCA...CCA-3'\n______________AUAGC__CAUAACAUUAC\n______________|:|:|__||:|||||:||\n______________UGUUG__GUGUUGUAGUG\n3'-UUU...GUUUG_____UU___________UUGGC...UCA-5'\n_____________|__________________|\n_____________83_________________43\n |
250 -- 256 |
67 -- 73 |
-14.8194 kcal/mol |
1.59581 kcal/mol |
5.25507 kcal/mol |
239 280@LB@ | |@LB@5'-CGC...GCGUA UUUCA...CCA-3'@LB@ AUAGC CAUAACAUUAC@LB@ |:|:| ||:|||||:||@LB@ UGUUG GUGUUGUAGUG@LB@3'-UUU...GUUUG UU UUGGC...UCA-5'@LB@ | |@LB@ 83 43@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -14.8194 kcal/mol@LB@Unfolding Energy - mRNA 1.59581 kcal/mol@LB@Unfolding Energy - sRNA 5.25507 kcal/mol@LB@@LB@Position - mRNA 240 -- 279@LB@Position - sRNA 44 -- 82@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 54 |
0.002071 |
0.1363 |
stm1429 |
ydhB |
-17.23 |
0.050879 |
3 -- 45 |
36 -- 79 |
putative LysR family transcriptional regulator |
|
_____________2___________________________________46\n_____________|___________________________________|\n5'-CAA...UAUCA________UU__CGCA___________________UUACG...UCA-3'\n______________GACAGACA__GU____GAGUGU__AGGGAGUGAAA\n______________||||||||__||____:|:|||__|||:|||||||\n______________CUGUCUGU__CA____UUUACA__UCCUUCACUUU\n3'-UUU...GAUAC________CC____________UG___________UUCCC...UCA-5'\n_____________|___________________________________|\n_____________80__________________________________35\n |
136 -- 142 |
132 -- 138 |
-30.0385 kcal/mol |
9.87391 kcal/mol |
6.0649 kcal/mol |
2 46@LB@ | |@LB@5'-CAA...UAUCA UU CGCA UUACG...UCA-3'@LB@ GACAGACA GU GAGUGU AGGGAGUGAAA@LB@ |||||||| || :|:||| |||:|||||||@LB@ CUGUCUGU CA UUUACA UCCUUCACUUU@LB@3'-UUU...GAUAC CC UG UUCCC...UCA-5'@LB@ | |@LB@ 80 35@LB@@LB@@LB@Energy -17.23 kcal/mol@LB@Hybridization Energy -30.0385 kcal/mol@LB@Unfolding Energy - mRNA 9.87391 kcal/mol@LB@Unfolding Energy - sRNA 6.0649 kcal/mol@LB@@LB@Position - mRNA 3 -- 45@LB@Position - sRNA 36 -- 79@LB@Position Seed - mRNA 136 -- 142@LB@Position Seed - sRNA 132 -- 138@LB@ |
