46 |
0.009803 |
0.5385 |
b1418 |
cybB |
-9.32 |
0.138160 |
281 -- 295 |
73 -- 89 |
cytochrome b561 |
|
_____________280_______________296\n_____________|_________________|\n5'-AAC...GCAAU_________________CUUCC-3'\n______________GGAGUUU_CG_UGGUUU\n______________::||||:_||_|||:||\n______________UUUCAAG_GC_ACCGAA\n3'-CGC...GGCGU_______U__A______AUCAA...AAG-5'\n_____________|_________________|\n_____________90________________72\n |
281 -- 287 |
83 -- 89 |
-12.2046 kcal/mol |
2.36714 kcal/mol |
0.517627 kcal/mol |
280 296@LB@ | |@LB@5'-AAC...GCAAU CUUCC-3'@LB@ GGAGUUU CG UGGUUU@LB@ ::||||: || |||:||@LB@ UUUCAAG GC ACCGAA@LB@3'-CGC...GGCGU U A AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -12.2046 kcal/mol@LB@Unfolding Energy - mRNA 2.36714 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 281 -- 295@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 83 -- 89@LB@ |
131 |
0.02244 |
0.5385 |
b1713 |
pheT |
-10.81 |
0.076409 |
64 -- 80 |
73 -- 89 |
phenylalanine tRNA synthetase beta subunit |
|
_____________63________________81\n_____________|_________________|\n5'-CUG...ACCCG_________UC______CGCCU...ACG-3'\n______________GAAGUUUAC__UGGUUU\n______________:|||||:||__|||:||\n______________UUUCAAGUG__ACCGAA\n3'-CGC...GGCGU_________CA______AUCAA...AAG-5'\n_____________|_________________|\n_____________90________________72\n |
66 -- 72 |
81 -- 87 |
-14.6363 kcal/mol |
3.30516 kcal/mol |
0.517627 kcal/mol |
63 81@LB@ | |@LB@5'-CUG...ACCCG UC CGCCU...ACG-3'@LB@ GAAGUUUAC UGGUUU@LB@ :|||||:|| |||:||@LB@ UUUCAAGUG ACCGAA@LB@3'-CGC...GGCGU CA AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -10.81 kcal/mol@LB@Hybridization Energy -14.6363 kcal/mol@LB@Unfolding Energy - mRNA 3.30516 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 64 -- 80@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 81 -- 87@LB@ |
54 |
0.01077 |
0.5385 |
b1820 |
yobD |
-10.70 |
0.079862 |
85 -- 97 |
73 -- 84 |
UPF0266 family inner membrane protein |
|
_____________84____________98\n_____________|_____________|\n5'-ACC...GUGGA___U_________CUUCG...CCC-3'\n______________UCA_CGUUGGCUU\n______________|||_|||||||||\n______________AGU_GCAACCGAA\n3'-CGC...UUUCA_____________AUCAA...AAG-5'\n_____________|_____________|\n_____________85____________72\n |
91 -- 97 |
73 -- 79 |
-16.3135 kcal/mol |
5.10116 kcal/mol |
0.508835 kcal/mol |
84 98@LB@ | |@LB@5'-ACC...GUGGA U CUUCG...CCC-3'@LB@ UCA CGUUGGCUU@LB@ ||| |||||||||@LB@ AGU GCAACCGAA@LB@3'-CGC...UUUCA AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -16.3135 kcal/mol@LB@Unfolding Energy - mRNA 5.10116 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 85 -- 97@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 73 -- 79@LB@ |
174 |
0.03067 |
0.5559 |
b4005 |
purD |
-11.17 |
0.066076 |
4 -- 22 |
73 -- 90 |
phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase |
|
_____________3___________________23\n_____________|___________________|\n________5'-GUG________CU__A______CUGAC...GUA-3'\n______________AAAGGUUC__CG_UGGCUU\n______________|||:||||__||_||||||\n______________UUUUCAAG__GC_ACCGAA\n3'-CGC...AGGCG________U___A______AUCAA...AAG-5'\n_____________|___________________|\n_____________91__________________72\n |
5 -- 11 |
83 -- 89 |
-16.9563 kcal/mol |
5.26463 kcal/mol |
0.517799 kcal/mol |
3 23@LB@ | |@LB@ 5'-GUG CU A CUGAC...GUA-3'@LB@ AAAGGUUC CG UGGCUU@LB@ |||:|||| || ||||||@LB@ UUUUCAAG GC ACCGAA@LB@3'-CGC...AGGCG U A AUCAA...AAG-5'@LB@ | |@LB@ 91 72@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -16.9563 kcal/mol@LB@Unfolding Energy - mRNA 5.26463 kcal/mol@LB@Unfolding Energy - sRNA 0.517799 kcal/mol@LB@@LB@Position - mRNA 4 -- 22@LB@Position - sRNA 73 -- 90@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 83 -- 89@LB@ |
57 |
0.01133 |
0.5385 |
b0026 |
ileS |
-8.45 |
0.192830 |
289 -- 299 |
74 -- 83 |
isoleucyl-tRNA synthetase |
|
_____________288_________300\n_____________|___________|\n5'-AUG...GCUGG________A__G-3'\n______________CGCGUUGG_CU\n______________|:||||||_||\n______________GUGCAACC_GA\n3'-CGC...UUCAA___________AAUCA...AAG-5'\n_____________|___________|\n_____________84__________73\n |
290 -- 296 |
76 -- 82 |
-13.1796 kcal/mol |
4.23376 kcal/mol |
0.494551 kcal/mol |
288 300@LB@ | |@LB@5'-AUG...GCUGG A G-3'@LB@ CGCGUUGG CU@LB@ |:|||||| ||@LB@ GUGCAACC GA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -13.1796 kcal/mol@LB@Unfolding Energy - mRNA 4.23376 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 289 -- 299@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 76 -- 82@LB@ |
56 |
0.01109 |
0.5385 |
b0425 |
panE |
-9.95 |
0.107741 |
273 -- 289 |
74 -- 89 |
2-dehydropantoate reductase NADPH-specific |
|
_____________272_______________290\n_____________|_________________|\n5'-AUC...GUCAU________G_GC_____GCGCG...CGC-3'\n______________GAAGUUCA_G__UGGCU\n______________:|||||||_|__|||||\n______________UUUCAAGU_C__ACCGA\n3'-CGC...GGCGU________G_A______AAUCA...AAG-5'\n_____________|_________________|\n_____________90________________73\n |
274 -- 280 |
82 -- 88 |
-18.2046 kcal/mol |
7.73441 kcal/mol |
0.517373 kcal/mol |
272 290@LB@ | |@LB@5'-AUC...GUCAU G GC GCGCG...CGC-3'@LB@ GAAGUUCA G UGGCU@LB@ :||||||| | |||||@LB@ UUUCAAGU C ACCGA@LB@3'-CGC...GGCGU G A AAUCA...AAG-5'@LB@ | |@LB@ 90 73@LB@@LB@@LB@Energy -9.95 kcal/mol@LB@Hybridization Energy -18.2046 kcal/mol@LB@Unfolding Energy - mRNA 7.73441 kcal/mol@LB@Unfolding Energy - sRNA 0.517373 kcal/mol@LB@@LB@Position - mRNA 273 -- 289@LB@Position - sRNA 74 -- 89@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 82 -- 88@LB@ |
65 |
0.01282 |
0.5385 |
b0589 |
fepG |
-12.08 |
0.045738 |
8 -- 17 |
74 -- 83 |
iron-enterobactin ABC transporter permease |
|
_____________7__________18\n_____________|__________|\n____5'-CAUAUGG__________GGUGG...CGC-3'\n______________CGCGUUGGCU\n______________|:||||||||\n______________GUGCAACCGA\n3'-CGC...UUCAA__________AAUCA...AAG-5'\n_____________|__________|\n_____________84_________73\n |
11 -- 17 |
74 -- 80 |
-17.1529 kcal/mol |
4.57841 kcal/mol |
0.494551 kcal/mol |
7 18@LB@ | |@LB@ 5'-CAUAUGG GGUGG...CGC-3'@LB@ CGCGUUGGCU@LB@ |:||||||||@LB@ GUGCAACCGA@LB@3'-CGC...UUCAA AAUCA...AAG-5'@LB@ | |@LB@ 84 73@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -17.1529 kcal/mol@LB@Unfolding Energy - mRNA 4.57841 kcal/mol@LB@Unfolding Energy - sRNA 0.494551 kcal/mol@LB@@LB@Position - mRNA 8 -- 17@LB@Position - sRNA 74 -- 83@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 74 -- 80@LB@ |
48 |
0.009918 |
0.5385 |
b0641 |
lptE |
-9.88 |
0.110832 |
177 -- 184 |
74 -- 81 |
LPS assembly OM complex LptDE lipoprotein component |
|
_____________176______185\n_____________|________|\n5'-ACG...CUGGU________AAGCG...UGA-3'\n______________CGUUGGCU\n______________||||||||\n______________GCAACCGA\n3'-CGC...CAAGU________AAUCA...AAG-5'\n_____________|________|\n_____________82_______73\n |
178 -- 184 |
74 -- 80 |
-13.2047 kcal/mol |
2.99134 kcal/mol |
0.332056 kcal/mol |
176 185@LB@ | |@LB@5'-ACG...CUGGU AAGCG...UGA-3'@LB@ CGUUGGCU@LB@ ||||||||@LB@ GCAACCGA@LB@3'-CGC...CAAGU AAUCA...AAG-5'@LB@ | |@LB@ 82 73@LB@@LB@@LB@Energy -9.88 kcal/mol@LB@Hybridization Energy -13.2047 kcal/mol@LB@Unfolding Energy - mRNA 2.99134 kcal/mol@LB@Unfolding Energy - sRNA 0.332056 kcal/mol@LB@@LB@Position - mRNA 177 -- 184@LB@Position - sRNA 74 -- 81@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 74 -- 80@LB@ |
50 |
0.0104 |
0.5385 |
b0661 |
miaB |
-10.15 |
0.099644 |
35 -- 45 |
74 -- 85 |
tRNA-i(6)A37 methylthiotransferase |
|
_____________34___________46\n_____________|____________|\n5'-CGC...GCAAU____________GAUUU...AAC-3'\n______________UUC_CGUUGGUU\n______________|||_||||||:|\n______________AAG_GCAACCGA\n3'-CGC...UUUUC___U________AAUCA...AAG-5'\n_____________|____________|\n_____________86___________73\n |
39 -- 45 |
74 -- 80 |
-13.4892 kcal/mol |
2.82751 kcal/mol |
0.512001 kcal/mol |
34 46@LB@ | |@LB@5'-CGC...GCAAU GAUUU...AAC-3'@LB@ UUC CGUUGGUU@LB@ ||| ||||||:|@LB@ AAG GCAACCGA@LB@3'-CGC...UUUUC U AAUCA...AAG-5'@LB@ | |@LB@ 86 73@LB@@LB@@LB@Energy -10.15 kcal/mol@LB@Hybridization Energy -13.4892 kcal/mol@LB@Unfolding Energy - mRNA 2.82751 kcal/mol@LB@Unfolding Energy - sRNA 0.512001 kcal/mol@LB@@LB@Position - mRNA 35 -- 45@LB@Position - sRNA 74 -- 85@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 74 -- 80@LB@ |
184 |
0.03259 |
0.5559 |
b0811 |
glnH |
-9.61 |
0.123139 |
215 -- 230 |
74 -- 90 |
glutamine transporter subunit |
|
_____________214________________231\n_____________|__________________|\n5'-AUC...GUAUU_______U__________GCACU...CCG-3'\n______________AAAAGUU_CAC__UGGCU\n______________|||||||_|||__|||||\n______________UUUUCAA_GUG__ACCGA\n3'-CGC...AGGCG___________CA_____AAUCA...AAG-5'\n_____________|__________________|\n_____________91_________________73\n |
215 -- 221 |
84 -- 90 |
-14.2101 kcal/mol |
4.07847 kcal/mol |
0.517587 kcal/mol |
214 231@LB@ | |@LB@5'-AUC...GUAUU U GCACU...CCG-3'@LB@ AAAAGUU CAC UGGCU@LB@ ||||||| ||| |||||@LB@ UUUUCAA GUG ACCGA@LB@3'-CGC...AGGCG CA AAUCA...AAG-5'@LB@ | |@LB@ 91 73@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -14.2101 kcal/mol@LB@Unfolding Energy - mRNA 4.07847 kcal/mol@LB@Unfolding Energy - sRNA 0.517587 kcal/mol@LB@@LB@Position - mRNA 215 -- 230@LB@Position - sRNA 74 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 84 -- 90@LB@ |