137 |
0.006825 |
0.1774 |
stm1196 |
acpP |
-14.14 |
0.161333 |
197 -- 223 |
36 -- 60 |
acyl carrier protein |
|
_____________196___________________________________________224\n_____________|_____________________________________________|\n5'-ACU...AGAAC_______GAAA_____C____A____CU__GCGUUAA________AAGUA...UGG-3'\n______________GCGUUAA____AUUAU_GGCG_ACAG__GG_______GCAGGAAG\n______________:|:||||____|:|||_|:|:_||||__||_______:|||||||\n______________UGUAAUU____UGAUA_CUGU_UGUC__CC_______UGUCCUUC\n3'-UUU...CACGA_______AG_______C____C________AUUUACA________ACUUU...UCA-5'\n_____________|_____________________________________________|\n_____________61____________________________________________35\n |
258 -- 264 |
137 -- 143 |
-28.6095 kcal/mol |
10.3633 kcal/mol |
7.13805 kcal/mol |
196 224@LB@ | |@LB@5'-ACU...AGAAC GAAA C A CU GCGUUAA AAGUA...UGG-3'@LB@ GCGUUAA AUUAU GGCG ACAG GG GCAGGAAG@LB@ :|:|||| |:||| |:|: |||| || :|||||||@LB@ UGUAAUU UGAUA CUGU UGUC CC UGUCCUUC@LB@3'-UUU...CACGA AG C C AUUUACA ACUUU...UCA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -14.14 kcal/mol@LB@Hybridization Energy -28.6095 kcal/mol@LB@Unfolding Energy - mRNA 10.3633 kcal/mol@LB@Unfolding Energy - sRNA 7.13805 kcal/mol@LB@@LB@Position - mRNA 197 -- 223@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 137 -- 143@LB@ |
196 |
0.01089 |
0.197 |
stm3904 |
ilvD |
-14.14 |
0.161583 |
237 -- 253 |
179 -- 194 |
dihydroxy-acid dehydratase |
|
_____________236___________254\n_____________|_____________|\n5'-CGA...UGAAG___AA________AGUAA...GCA-3'\n______________GGA__AGAUGGGG\n______________|||__|||::|||\n______________CCU__UCUGUCCC\n3'-UUU...UGAUA___G_________AUUUA...UCA-5'\n_____________|_____________|\n_____________195___________178\n |
182 -- 188 |
152 -- 158 |
-15.6614 kcal/mol |
1.17371 kcal/mol |
3.10307 kcal/mol |
236 254@LB@ | |@LB@5'-CGA...UGAAG AA AGUAA...GCA-3'@LB@ GGA AGAUGGGG@LB@ ||| |||::|||@LB@ CCU UCUGUCCC@LB@3'-UUU...UGAUA G AUUUA...UCA-5'@LB@ | |@LB@ 195 178@LB@@LB@@LB@Energy -14.14 kcal/mol@LB@Hybridization Energy -15.6614 kcal/mol@LB@Unfolding Energy - mRNA 1.17371 kcal/mol@LB@Unfolding Energy - sRNA 3.10307 kcal/mol@LB@@LB@Position - mRNA 237 -- 253@LB@Position - sRNA 179 -- 194@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 152 -- 158@LB@ |
71 |
0.003339 |
0.1596 |
stm0105 |
yabI |
-14.10 |
0.163814 |
151 -- 168 |
141 -- 162 |
similar to E. coli orf hypothetical protein (AAC73176.1); Blastp hit to AAC73176.1 (254 aa) 89% identity in aa 1 - 253 |
|
_____________150____________________169\n_____________|______________________|\n5'-UGA...ACGAA__G___________________AAUCC...GGU-3'\n______________GG_GGACGGGGUAA____GCAG\n______________|:_:|||:||||||____:|||\n______________CU_UCUGUCCCAUU____UGUC\n3'-UUU...GAUAC__G___________UACA____CUUCA...UCA-5'\n_____________|______________________|\n_____________163____________________140\n |
158 -- 164 |
149 -- 155 |
-23.8591 kcal/mol |
5.26969 kcal/mol |
3.68511 kcal/mol |
150 169@LB@ | |@LB@5'-UGA...ACGAA G AAUCC...GGU-3'@LB@ GG GGACGGGGUAA GCAG@LB@ |: :|||:|||||| :|||@LB@ CU UCUGUCCCAUU UGUC@LB@3'-UUU...GAUAC G UACA CUUCA...UCA-5'@LB@ | |@LB@ 163 140@LB@@LB@@LB@Energy -14.10 kcal/mol@LB@Hybridization Energy -23.8591 kcal/mol@LB@Unfolding Energy - mRNA 5.26969 kcal/mol@LB@Unfolding Energy - sRNA 3.68511 kcal/mol@LB@@LB@Position - mRNA 151 -- 168@LB@Position - sRNA 141 -- 162@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 149 -- 155@LB@ |
112 |
0.005549 |
0.1728 |
stm0602 |
ybdH |
-14.01 |
0.169356 |
159 -- 193 |
39 -- 79 |
oxidoreductase |
|
_____________158_____________194\n_____________|_______________|\n5'-GCG...CCCUA_G_____________GAACC...AGC-3'\n______________A_GACAACACAACAU\n______________|_:||||||||||||\n______________U_UUGUUGUGUUGUA\n3'-UUU...GUUUG_G_____________GUGUU...UCA-5'\n_____________|_______________|\n_____________80______________38\n |
196 -- 202 |
70 -- 76 |
-18.8338 kcal/mol |
1.20586 kcal/mol |
3.77892 kcal/mol |
158 194@LB@ | |@LB@5'-GCG...CCCUA G GAACC...AGC-3'@LB@ A GACAACACAACAU@LB@ | :||||||||||||@LB@ U UUGUUGUGUUGUA@LB@3'-UUU...GUUUG G GUGUU...UCA-5'@LB@ | |@LB@ 80 38@LB@@LB@@LB@Energy -14.01 kcal/mol@LB@Hybridization Energy -18.8338 kcal/mol@LB@Unfolding Energy - mRNA 1.20586 kcal/mol@LB@Unfolding Energy - sRNA 3.77892 kcal/mol@LB@@LB@Position - mRNA 159 -- 193@LB@Position - sRNA 39 -- 79@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 70 -- 76@LB@ |
166 |
0.009028 |
0.1932 |
stm1173 |
flgA |
-14.00 |
0.169768 |
53 -- 102 |
33 -- 85 |
flagella basal body P-ring formation protein FlgA |
|
_____________52__________________103\n_____________|___________________|\n5'-GCU...CCCUG___________GG______ACGCC...CCC-3'\n______________ACAAUGGCGCA__ACAUCA\n______________||||:::|:||__||||||\n______________UGUUGUUGUGU__UGUAGU\n3'-UUU...GUUUG___________________GUUGG...UCA-5'\n_____________|___________________|\n_____________86__________________32\n |
259 -- 265 |
74 -- 80 |
-16.6955 kcal/mol |
2.54166 kcal/mol |
4.84988 kcal/mol |
52 103@LB@ | |@LB@5'-GCU...CCCUG GG ACGCC...CCC-3'@LB@ ACAAUGGCGCA ACAUCA@LB@ ||||:::|:|| ||||||@LB@ UGUUGUUGUGU UGUAGU@LB@3'-UUU...GUUUG GUUGG...UCA-5'@LB@ | |@LB@ 86 32@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -16.6955 kcal/mol@LB@Unfolding Energy - mRNA 2.54166 kcal/mol@LB@Unfolding Energy - sRNA 4.84988 kcal/mol@LB@@LB@Position - mRNA 53 -- 102@LB@Position - sRNA 33 -- 85@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 74 -- 80@LB@ |
23 |
0.0005914 |
0.08814 |
stm3466 |
crp |
-13.97 |
0.171291 |
272 -- 288 |
36 -- 50 |
transcriptional regulator Crp |
|
_____________271_______________________________289\n_____________|_________________________________|\n5'-ACG...CGAAA______CUAAA________________C_____UAAUA...AGG-3'\n______________GCUAUG_____ACAGACA____AGAUG_UACAG\n______________:|||||_____|||||||____|:|||_|||||\n______________UGAUAC_____UGUCUGU____UUUAC_AUGUC\n3'-UUU...AUUAG______C___________CCCA___________CUUCA...UCA-5'\n_____________|_________________________________|\n_____________51________________________________35\n |
21 -- 27 |
155 -- 161 |
-20.3438 kcal/mol |
4.64329 kcal/mol |
5.58455 kcal/mol |
271 289@LB@ | |@LB@5'-ACG...CGAAA CUAAA C UAAUA...AGG-3'@LB@ GCUAUG ACAGACA AGAUG UACAG@LB@ :||||| ||||||| |:||| |||||@LB@ UGAUAC UGUCUGU UUUAC AUGUC@LB@3'-UUU...AUUAG C CCCA CUUCA...UCA-5'@LB@ | |@LB@ 51 35@LB@@LB@@LB@Energy -13.97 kcal/mol@LB@Hybridization Energy -20.3438 kcal/mol@LB@Unfolding Energy - mRNA 4.64329 kcal/mol@LB@Unfolding Energy - sRNA 5.58455 kcal/mol@LB@@LB@Position - mRNA 272 -- 288@LB@Position - sRNA 36 -- 50@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 155 -- 161@LB@ |
45 |
0.001635 |
0.1267 |
stm2351 |
hisP |
-13.82 |
0.180688 |
258 -- 282 |
115 -- 140 |
histidine and lysine/arginine/ornithine transport protein |
|
_____________257__________________________283\n_____________|____________________________|\n5'-UAC...GUCAU______CU____________________AGGCC...AUG-3'\n______________GAAGUG__GAAAGGGGUA___UCGCUGC\n______________||||||__:|||:|||||___|||||:|\n______________CUUCAC__UUUUUCCCAU___AGCGAUG\n3'-UUU...AUGUC__________________CAG_______GCACC...UCA-5'\n_____________|____________________________|\n_____________141__________________________114\n |
276 -- 282 |
115 -- 121 |
-29.6028 kcal/mol |
6.54228 kcal/mol |
8.52785 kcal/mol |
257 283@LB@ | |@LB@5'-UAC...GUCAU CU AGGCC...AUG-3'@LB@ GAAGUG GAAAGGGGUA UCGCUGC@LB@ |||||| :|||:||||| |||||:|@LB@ CUUCAC UUUUUCCCAU AGCGAUG@LB@3'-UUU...AUGUC CAG GCACC...UCA-5'@LB@ | |@LB@ 141 114@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -29.6028 kcal/mol@LB@Unfolding Energy - mRNA 6.54228 kcal/mol@LB@Unfolding Energy - sRNA 8.52785 kcal/mol@LB@@LB@Position - mRNA 258 -- 282@LB@Position - sRNA 115 -- 140@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 115 -- 121@LB@ |
194 |
0.01081 |
0.197 |
stm1954 |
fliY |
-13.82 |
0.181182 |
183 -- 228 |
153 -- 193 |
cystine ABC transporter substrate-binding protein |
|
_____________182________________________229\n_____________|__________________________|\n5'-CAG...GUCUA_________AC____AUAUU______UACUA...UGC-3'\n______________UGGUCAUUA__GGCA_____CGGGGU\n______________|::|||:||__|:||_____|:||||\n______________AUUAGUGAU__CUGU_____GUCCCA\n3'-UUU...AUGUA_________AC____CU_________UUUAC...UCA-5'\n_____________|__________________________|\n_____________194________________________152\n |
173 -- 179 |
165 -- 171 |
-18.5851 kcal/mol |
4.12345 kcal/mol |
4.10259 kcal/mol |
182 229@LB@ | |@LB@5'-CAG...GUCUA AC AUAUU UACUA...UGC-3'@LB@ UGGUCAUUA GGCA CGGGGU@LB@ |::|||:|| |:|| |:||||@LB@ AUUAGUGAU CUGU GUCCCA@LB@3'-UUU...AUGUA AC CU UUUAC...UCA-5'@LB@ | |@LB@ 194 152@LB@@LB@@LB@Energy -13.82 kcal/mol@LB@Hybridization Energy -18.5851 kcal/mol@LB@Unfolding Energy - mRNA 4.12345 kcal/mol@LB@Unfolding Energy - sRNA 4.10259 kcal/mol@LB@@LB@Position - mRNA 183 -- 228@LB@Position - sRNA 153 -- 193@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 165 -- 171@LB@ |
114 |
0.005594 |
0.1728 |
stm4557 |
holD |
-13.75 |
0.185681 |
35 -- 94 |
141 -- 186 |
DNA polymerase III subunit psi |
|
_____________34_____________________________________________95\n_____________|______________________________________________|\n5'-AGG...AAAUC__________C____CAAGACUUCACUUGC_________A______ACAUG...UUC-3'\n______________AUCACUGUGG_GCAG_______________CGGGGUAAA___GCAG\n______________||||||:|||_:|||_______________|:|||||||___:|||\n______________UAGUGAUACC_UGUC_______________GUCCCAUUU___UGUC\n3'-UUU...GUAAU_______________U_______________________ACA____CUUCA...UCA-5'\n_____________|______________________________________________|\n_____________187____________________________________________140\n |
83 -- 89 |
148 -- 154 |
-31.7183 kcal/mol |
12.8981 kcal/mol |
5.60568 kcal/mol |
34 95@LB@ | |@LB@5'-AGG...AAAUC C CAAGACUUCACUUGC A ACAUG...UUC-3'@LB@ AUCACUGUGG GCAG CGGGGUAAA GCAG@LB@ ||||||:||| :||| |:||||||| :|||@LB@ UAGUGAUACC UGUC GUCCCAUUU UGUC@LB@3'-UUU...GUAAU U ACA CUUCA...UCA-5'@LB@ | |@LB@ 187 140@LB@@LB@@LB@Energy -13.75 kcal/mol@LB@Hybridization Energy -31.7183 kcal/mol@LB@Unfolding Energy - mRNA 12.8981 kcal/mol@LB@Unfolding Energy - sRNA 5.60568 kcal/mol@LB@@LB@Position - mRNA 35 -- 94@LB@Position - sRNA 141 -- 186@LB@Position Seed - mRNA 83 -- 89@LB@Position Seed - sRNA 148 -- 154@LB@ |
169 |
0.009276 |
0.1945 |
stm0495 |
ybaK |
-13.73 |
0.186840 |
16 -- 30 |
44 -- 58 |
aminoacyl-tRNA deacylase |
|
_____________15_________________31\n_____________|__________________|\n5'-AAA...CAUUC____CU__G_________CGAAU...UGG-3'\n______________ACAC__AC_AUCACGAUC\n______________||||__||_|||||:|:|\n______________UGUG__UG_UAGUGUUGG\n3'-UUU...GUUGU____U_____________CAUUC...UCA-5'\n_____________|__________________|\n_____________59_________________43\n |
264 -- 270 |
63 -- 69 |
-14.6876 kcal/mol |
0.727125 kcal/mol |
6.44907 kcal/mol |
15 31@LB@ | |@LB@5'-AAA...CAUUC CU G CGAAU...UGG-3'@LB@ ACAC AC AUCACGAUC@LB@ |||| || |||||:|:|@LB@ UGUG UG UAGUGUUGG@LB@3'-UUU...GUUGU U CAUUC...UCA-5'@LB@ | |@LB@ 59 43@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -14.6876 kcal/mol@LB@Unfolding Energy - mRNA 0.727125 kcal/mol@LB@Unfolding Energy - sRNA 6.44907 kcal/mol@LB@@LB@Position - mRNA 16 -- 30@LB@Position - sRNA 44 -- 58@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 63 -- 69@LB@ |