| 116 |
0.006112 |
0.1855 |
b1260 |
trpA |
-12.39 |
0.048115 |
172 -- 199 |
63 -- 89 |
tryptophan synthase alpha subunit |
|
_____________171__________________________200\n_____________|____________________________|\n5'-GCC...UUCAC______U__AA_____GA__________GAUGG...CAU-3'\n______________GAUAUU_UG__AGCAC__GGGGAAAUCU\n______________:|||:|_:|__|:|||__:|||||||||\n______________UUAUGA_GC__UUGUG__UCCCUUUAGA\n3'-UUU...CGCGC______C__GG_____G___________ACCGA...GUG-5'\n_____________|____________________________|\n_____________90___________________________62\n |
193 -- 199 |
63 -- 69 |
-25.3377 kcal/mol |
5.06327 kcal/mol |
7.88429 kcal/mol |
171 200@LB@ | |@LB@5'-GCC...UUCAC U AA GA GAUGG...CAU-3'@LB@ GAUAUU UG AGCAC GGGGAAAUCU@LB@ :|||:| :| |:||| :|||||||||@LB@ UUAUGA GC UUGUG UCCCUUUAGA@LB@3'-UUU...CGCGC C GG G ACCGA...GUG-5'@LB@ | |@LB@ 90 62@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -25.3377 kcal/mol@LB@Unfolding Energy - mRNA 5.06327 kcal/mol@LB@Unfolding Energy - sRNA 7.88429 kcal/mol@LB@@LB@Position - mRNA 172 -- 199@LB@Position - sRNA 63 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 166 |
0.009748 |
0.2068 |
b1261 |
trpB |
-12.89 |
0.038353 |
88 -- 97 |
52 -- 61 |
tryptophan synthase beta subunit |
|
_____________87_________98\n_____________|__________|\n5'-UGG...AAACC__________GACUU...UCA-3'\n______________GGCUGCGCCG\n______________||||||||||\n______________CCGACGCGGC\n3'-UUU...UAGAA__________AUUUA...GUG-5'\n_____________|__________|\n_____________62_________51\n |
91 -- 97 |
52 -- 58 |
-23.3299 kcal/mol |
5.56351 kcal/mol |
4.87533 kcal/mol |
87 98@LB@ | |@LB@5'-UGG...AAACC GACUU...UCA-3'@LB@ GGCUGCGCCG@LB@ ||||||||||@LB@ CCGACGCGGC@LB@3'-UUU...UAGAA AUUUA...GUG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -23.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.56351 kcal/mol@LB@Unfolding Energy - sRNA 4.87533 kcal/mol@LB@@LB@Position - mRNA 88 -- 97@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 192 |
0.01187 |
0.2159 |
b2600 |
tyrA |
-9.34 |
0.184498 |
136 -- 155 |
70 -- 86 |
fused chorismate mutase T/prephenate dehydrogenase |
|
_____________135__________________156\n_____________|____________________|\n5'-UCG...GCCUU_______G__AUU_______AUCUG...UGG-3'\n______________GCUGCGU_AA___CAUCAGG\n______________:|||||:_||___||:||||\n______________UGACGCG_UU___GUGGUCC\n3'-UUU...GCUUA_______G____________CUUUA...GUG-5'\n_____________|____________________|\n_____________87___________________69\n |
149 -- 155 |
70 -- 76 |
-22.0981 kcal/mol |
5.48162 kcal/mol |
7.27772 kcal/mol |
135 156@LB@ | |@LB@5'-UCG...GCCUU G AUU AUCUG...UGG-3'@LB@ GCUGCGU AA CAUCAGG@LB@ :|||||: || ||:||||@LB@ UGACGCG UU GUGGUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -22.0981 kcal/mol@LB@Unfolding Energy - mRNA 5.48162 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 136 -- 155@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 185 |
0.01108 |
0.2089 |
b0662 |
ubiF |
-8.33 |
0.279302 |
272 -- 292 |
6 -- 27 |
2-octaprenyl-3-methyl-6-methoxy-1 4-benzoquinol oxygenase |
|
_____________271____________________293\n_____________|______________________|\n5'-AAU...GGGCU____________GA___GC___AACGGUGA-3'\n______________GGCACAGCAC_G__UUU__GGU\n______________||||||||||_|__|||__||:\n______________CCGUGUCGUG_C__AAA__CCG\n3'-UUU...UGUUC__________A_AA___GU___GCGUG-5'\n_____________|______________________|\n_____________28_____________________5\n |
275 -- 281 |
18 -- 24 |
-24.5826 kcal/mol |
6.14687 kcal/mol |
10.1088 kcal/mol |
271 293@LB@ | |@LB@5'-AAU...GGGCU GA GC AACGGUGA-3'@LB@ GGCACAGCAC G UUU GGU@LB@ |||||||||| | ||| ||:@LB@ CCGUGUCGUG C AAA CCG@LB@3'-UUU...UGUUC A AA GU GCGUG-5'@LB@ | |@LB@ 28 5@LB@@LB@@LB@Energy -8.33 kcal/mol@LB@Hybridization Energy -24.5826 kcal/mol@LB@Unfolding Energy - mRNA 6.14687 kcal/mol@LB@Unfolding Energy - sRNA 10.1088 kcal/mol@LB@@LB@Position - mRNA 272 -- 292@LB@Position - sRNA 6 -- 27@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 119 |
0.006508 |
0.1913 |
b3834 |
ubiJ |
-9.73 |
0.156135 |
145 -- 181 |
28 -- 78 |
aerobic ubiquinone synthesis protein SCP2 family protein |
|
_____________144_________________________________________________182\n_____________|___________________________________________________|\n5'-GCU...AAUCU____G______UUGUGGC_____A___________________________UUCUG...UGG-3'\n______________GACG_CAGGGG_______GCUGC_UCGU______________GGUUAUAAG\n______________:||:_|||||:_______|||||_:|||______________:||||:|||\n______________UUGU_GUCCCU_______CGACG_GGCA______________UCAAUGUUC\n3'-UUU...CGCGG____G______UUAGAAC_____C____UUUAAUAAUACUAC_________CCGUG...GUG-5'\n_____________|___________________________________________________|\n_____________79__________________________________________________27\n |
175 -- 181 |
28 -- 34 |
-33.2852 kcal/mol |
14.1676 kcal/mol |
9.38606 kcal/mol |
144 182@LB@ | |@LB@5'-GCU...AAUCU G UUGUGGC A UUCUG...UGG-3'@LB@ GACG CAGGGG GCUGC UCGU GGUUAUAAG@LB@ :||: |||||: ||||| :||| :||||:|||@LB@ UUGU GUCCCU CGACG GGCA UCAAUGUUC@LB@3'-UUU...CGCGG G UUAGAAC C UUUAAUAAUACUAC CCGUG...GUG-5'@LB@ | |@LB@ 79 27@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -33.2852 kcal/mol@LB@Unfolding Energy - mRNA 14.1676 kcal/mol@LB@Unfolding Energy - sRNA 9.38606 kcal/mol@LB@@LB@Position - mRNA 145 -- 181@LB@Position - sRNA 28 -- 78@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 49 |
0.00252 |
0.1727 |
b3452 |
ugpA |
-14.40 |
0.019328 |
59 -- 78 |
52 -- 70 |
sn-glycerol-3-phosphate ABC transporter permease |
|
_____________58___________________79\n_____________|____________________|\n5'-GAG...AGCGU_______AGUU_________CUUUG...CGG-3'\n______________GGAAAUC____GCUGCGCCG\n______________|||||||____|||||||||\n______________CCUUUAG____CGACGCGGC\n3'-UUU...UGGUC_______AAC__________AUUUA...GUG-5'\n_____________|____________________|\n_____________71___________________51\n |
72 -- 78 |
52 -- 58 |
-27.9409 kcal/mol |
6.69662 kcal/mol |
6.84683 kcal/mol |
58 79@LB@ | |@LB@5'-GAG...AGCGU AGUU CUUUG...CGG-3'@LB@ GGAAAUC GCUGCGCCG@LB@ ||||||| |||||||||@LB@ CCUUUAG CGACGCGGC@LB@3'-UUU...UGGUC AAC AUUUA...GUG-5'@LB@ | |@LB@ 71 51@LB@@LB@@LB@Energy -14.40 kcal/mol@LB@Hybridization Energy -27.9409 kcal/mol@LB@Unfolding Energy - mRNA 6.69662 kcal/mol@LB@Unfolding Energy - sRNA 6.84683 kcal/mol@LB@@LB@Position - mRNA 59 -- 78@LB@Position - sRNA 52 -- 70@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 15 |
0.000767 |
0.1666 |
b2497 |
uraA |
-16.56 |
0.007223 |
161 -- 232 |
28 -- 90 |
uracil permease |
|
_____________160_________________________________________________________________________233\n_____________|___________________________________________________________________________|\n5'-AGC...UUUUU_____AA_____UAU_____AUAAUA___A___U___A__AU_AC________C_____CGG_______GA____ACCGC...UCC-3'\n______________GAGUA__GCGCC___AACAC______CAG_GGA_AAU_CU__G__GCGCCGUG___UAU___GGUGAGU___AAG\n______________||:||__|||||___|||||______|||_|||_|||_||__|__|||||||:___|||___|:|||||___|||\n______________CUUAU__CGCGG___UUGUG______GUC_CCU_UUA_GA__C__CGCGGCAU___AUA___CUACUCA___UUC\n3'-UUU...ACGCG_____GA_________________________________AC_GA________UUA___AUA_______AUG___CCGUG...GUG-5'\n_____________|___________________________________________________________________________|\n_____________91__________________________________________________________________________27\n |
221 -- 227 |
34 -- 40 |
-48.784 kcal/mol |
15.1604 kcal/mol |
17.0677 kcal/mol |
160 233@LB@ | |@LB@5'-AGC...UUUUU AA UAU AUAAUA A U A AU AC C CGG GA ACCGC...UCC-3'@LB@ GAGUA GCGCC AACAC CAG GGA AAU CU G GCGCCGUG UAU GGUGAGU AAG@LB@ ||:|| ||||| ||||| ||| ||| ||| || | |||||||: ||| |:||||| |||@LB@ CUUAU CGCGG UUGUG GUC CCU UUA GA C CGCGGCAU AUA CUACUCA UUC@LB@3'-UUU...ACGCG GA AC GA UUA AUA AUG CCGUG...GUG-5'@LB@ | |@LB@ 91 27@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -48.784 kcal/mol@LB@Unfolding Energy - mRNA 15.1604 kcal/mol@LB@Unfolding Energy - sRNA 17.0677 kcal/mol@LB@@LB@Position - mRNA 161 -- 232@LB@Position - sRNA 28 -- 90@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 57 |
0.002848 |
0.1727 |
b2059 |
wcaA |
-10.75 |
0.100075 |
282 -- 295 |
72 -- 85 |
putative glycosyl transferase |
|
_____________281____________296\n_____________|______________|\n5'-AAC...CGGUU_________G____CAGCA-3'\n______________UUGCGCCAG_ACUA\n______________:|||||||:_||:|\n______________GACGCGGUU_UGGU\n3'-UUU...CUUAU_________G____CCCUU...GUG-5'\n_____________|______________|\n_____________86_____________71\n |
284 -- 290 |
77 -- 83 |
-19.8604 kcal/mol |
1.87274 kcal/mol |
7.23443 kcal/mol |
281 296@LB@ | |@LB@5'-AAC...CGGUU G CAGCA-3'@LB@ UUGCGCCAG ACUA@LB@ :|||||||: ||:|@LB@ GACGCGGUU UGGU@LB@3'-UUU...CUUAU G CCCUU...GUG-5'@LB@ | |@LB@ 86 71@LB@@LB@@LB@Energy -10.75 kcal/mol@LB@Hybridization Energy -19.8604 kcal/mol@LB@Unfolding Energy - mRNA 1.87274 kcal/mol@LB@Unfolding Energy - sRNA 7.23443 kcal/mol@LB@@LB@Position - mRNA 282 -- 295@LB@Position - sRNA 72 -- 85@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 77 -- 83@LB@ |
| 114 |
0.006011 |
0.1855 |
b0422 |
xseB |
-10.73 |
0.101337 |
104 -- 119 |
73 -- 87 |
exonuclease VII small subunit |
|
_____________103______________120\n_____________|________________|\n5'-CAA...CGCUU________A__U____UUACC...AAG-3'\n______________UGCUGUGC_CA_CACC\n______________|:|||:||_||_||||\n______________AUGACGCG_GU_GUGG\n3'-UUU...CGCUU___________U____UCCCU...GUG-5'\n_____________|________________|\n_____________88_______________72\n |
105 -- 111 |
80 -- 86 |
-20.3088 kcal/mol |
2.628 kcal/mol |
6.95602 kcal/mol |
103 120@LB@ | |@LB@5'-CAA...CGCUU A U UUACC...AAG-3'@LB@ UGCUGUGC CA CACC@LB@ |:|||:|| || ||||@LB@ AUGACGCG GU GUGG@LB@3'-UUU...CGCUU U UCCCU...GUG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -10.73 kcal/mol@LB@Hybridization Energy -20.3088 kcal/mol@LB@Unfolding Energy - mRNA 2.628 kcal/mol@LB@Unfolding Energy - sRNA 6.95602 kcal/mol@LB@@LB@Position - mRNA 104 -- 119@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 199 |
0.0124 |
0.2193 |
b0128 |
yadH |
-9.95 |
0.142385 |
61 -- 79 |
68 -- 88 |
putative ABC transporter permease |
|
_____________60____________________80\n_____________|_____________________|\n5'-UUA...UUGAA_________G___________UCAAC...UCA-3'\n______________GUGCUGCGU_AGCA__GGGGA\n______________:|:|||||:_|:||__:||||\n______________UAUGACGCG_UUGU__UCCCU\n3'-UUU...GCGCU_________G____GG_____UUAGA...GUG-5'\n_____________|_____________________|\n_____________89____________________67\n |
61 -- 67 |
82 -- 88 |
-26.4707 kcal/mol |
9.14335 kcal/mol |
7.38144 kcal/mol |
60 80@LB@ | |@LB@5'-UUA...UUGAA G UCAAC...UCA-3'@LB@ GUGCUGCGU AGCA GGGGA@LB@ :|:|||||: |:|| :||||@LB@ UAUGACGCG UUGU UCCCU@LB@3'-UUU...GCGCU G GG UUAGA...GUG-5'@LB@ | |@LB@ 89 67@LB@@LB@@LB@Energy -9.95 kcal/mol@LB@Hybridization Energy -26.4707 kcal/mol@LB@Unfolding Energy - mRNA 9.14335 kcal/mol@LB@Unfolding Energy - sRNA 7.38144 kcal/mol@LB@@LB@Position - mRNA 61 -- 79@LB@Position - sRNA 68 -- 88@LB@Position Seed - mRNA 61 -- 67@LB@Position Seed - sRNA 82 -- 88@LB@ |
