180 |
0.007734 |
0.1511 |
b3617 |
kbl |
-7.53 |
0.200168 |
193 -- 210 |
43 -- 60 |
glycine C-acetyltransferase |
|
_____________192________________211\n_____________|__________________|\n5'-UUU...CUGGA_____GCAA_________AAUUU...AAG-3'\n______________GAAUC____UGCGUGGAG\n______________:||||____|:||||:||\n______________UUUAG____AUGCACUUC\n3'-AUU...GUCGG_____GCUA_________AUUUU...AUG-5'\n_____________|__________________|\n_____________61_________________42\n |
204 -- 210 |
43 -- 49 |
-15.3085 kcal/mol |
4.51554 kcal/mol |
3.27548 kcal/mol |
192 211@LB@ | |@LB@5'-UUU...CUGGA GCAA AAUUU...AAG-3'@LB@ GAAUC UGCGUGGAG@LB@ :|||| |:||||:||@LB@ UUUAG AUGCACUUC@LB@3'-AUU...GUCGG GCUA AUUUU...AUG-5'@LB@ | |@LB@ 61 42@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -15.3085 kcal/mol@LB@Unfolding Energy - mRNA 4.51554 kcal/mol@LB@Unfolding Energy - sRNA 3.27548 kcal/mol@LB@@LB@Position - mRNA 193 -- 210@LB@Position - sRNA 43 -- 60@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 43 -- 49@LB@ |
37 |
0.0003769 |
0.03584 |
b1212 |
prmC |
-14.52 |
0.001141 |
215 -- 228 |
43 -- 56 |
RF-1 and RF-2 N5-glutamine methyltransferase |
|
_____________214____________229\n_____________|______________|\n5'-CGU...CAACA______________CAAUA...GCA-3'\n______________CUGGUUACGUGAAG\n______________|:|:||||||||||\n______________GGCUAAUGCACUUC\n3'-AUU...GUUUA______________AUUUU...AUG-5'\n_____________|______________|\n_____________57_____________42\n |
222 -- 228 |
43 -- 49 |
-20.863 kcal/mol |
3.08488 kcal/mol |
3.27327 kcal/mol |
214 229@LB@ | |@LB@5'-CGU...CAACA CAAUA...GCA-3'@LB@ CUGGUUACGUGAAG@LB@ |:|:||||||||||@LB@ GGCUAAUGCACUUC@LB@3'-AUU...GUUUA AUUUU...AUG-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -14.52 kcal/mol@LB@Hybridization Energy -20.863 kcal/mol@LB@Unfolding Energy - mRNA 3.08488 kcal/mol@LB@Unfolding Energy - sRNA 3.27327 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 43 -- 49@LB@ |
12 |
3.867e-05 |
0.01134 |
b0728 |
sucC |
-9.87 |
0.049323 |
145 -- 186 |
43 -- 73 |
succinyl-CoA synthetase beta subunit |
|
_____________144_________________________________________187\n_____________|___________________________________________|\n5'-CGC...GAUAC_____________UACGGUUUAAA____AA_____________GAUGG...AAG-3'\n______________GAAAUAUUCGGUC___________AGAU__CGAUUAC_UGAAG\n______________:||||||||:|:|___________|:||__|||||||_|||||\n______________UUUUAUAAGUCGG___________UUUA__GCUAAUG_ACUUC\n3'-AUU...GCCGA____________________________G________C_____AUUUU...AUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________42\n |
175 -- 181 |
49 -- 55 |
-26.5157 kcal/mol |
7.48621 kcal/mol |
9.17828 kcal/mol |
144 187@LB@ | |@LB@5'-CGC...GAUAC UACGGUUUAAA AA GAUGG...AAG-3'@LB@ GAAAUAUUCGGUC AGAU CGAUUAC UGAAG@LB@ :||||||||:|:| |:|| ||||||| |||||@LB@ UUUUAUAAGUCGG UUUA GCUAAUG ACUUC@LB@3'-AUU...GCCGA G C AUUUU...AUG-5'@LB@ | |@LB@ 74 42@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -26.5157 kcal/mol@LB@Unfolding Energy - mRNA 7.48621 kcal/mol@LB@Unfolding Energy - sRNA 9.17828 kcal/mol@LB@@LB@Position - mRNA 145 -- 186@LB@Position - sRNA 43 -- 73@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |
91 |
0.002527 |
0.0977 |
b4393 |
trpR |
-12.48 |
0.007130 |
9 -- 21 |
43 -- 55 |
transcriptional repressor tryptophan-binding |
|
_____________8_____________22\n_____________|_____________|\n___5'-GAGACGCG_____________AACGU...AUC-3'\n______________CGGUUAUGUGAAG\n______________||:|||:||||||\n______________GCUAAUGCACUUC\n3'-AUU...UUUAG_____________AUUUU...AUG-5'\n_____________|_____________|\n_____________56____________42\n |
15 -- 21 |
43 -- 49 |
-16.824 kcal/mol |
1.08541 kcal/mol |
3.2693 kcal/mol |
8 22@LB@ | |@LB@ 5'-GAGACGCG AACGU...AUC-3'@LB@ CGGUUAUGUGAAG@LB@ ||:|||:||||||@LB@ GCUAAUGCACUUC@LB@3'-AUU...UUUAG AUUUU...AUG-5'@LB@ | |@LB@ 56 42@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -16.824 kcal/mol@LB@Unfolding Energy - mRNA 1.08541 kcal/mol@LB@Unfolding Energy - sRNA 3.2693 kcal/mol@LB@@LB@Position - mRNA 9 -- 21@LB@Position - sRNA 43 -- 55@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 43 -- 49@LB@ |
64 |
0.001083 |
0.05856 |
b3471 |
yhhQ |
-11.41 |
0.016564 |
49 -- 60 |
44 -- 55 |
DUF165 family inner membrane protein |
|
_____________48___________61\n_____________|____________|\n5'-AAA...GUUAA____________AAUUA...UUC-3'\n______________CGAUUGCGUGAA\n______________|||||:||||||\n______________GCUAAUGCACUU\n3'-AUU...UUUAG____________CAUUU...AUG-5'\n_____________|____________|\n_____________56___________43\n |
54 -- 60 |
44 -- 50 |
-16.5289 kcal/mol |
2.50651 kcal/mol |
2.62518 kcal/mol |
48 61@LB@ | |@LB@5'-AAA...GUUAA AAUUA...UUC-3'@LB@ CGAUUGCGUGAA@LB@ |||||:||||||@LB@ GCUAAUGCACUU@LB@3'-AUU...UUUAG CAUUU...AUG-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -11.41 kcal/mol@LB@Hybridization Energy -16.5289 kcal/mol@LB@Unfolding Energy - mRNA 2.50651 kcal/mol@LB@Unfolding Energy - sRNA 2.62518 kcal/mol@LB@@LB@Position - mRNA 49 -- 60@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 44 -- 50@LB@ |
159 |
0.006413 |
0.1413 |
b4242 |
mgtA |
-7.15 |
0.243258 |
247 -- 262 |
45 -- 58 |
magnesium transporter |
|
_____________246______________263\n_____________|________________|\n5'-GGU...UUCCC________CAU_____UCCAU...UGG-3'\n______________GUCUGGUU___CGUGA\n______________:||:|:||___|||||\n______________UAGGCUAA___GCACU\n3'-AUU...CGGUU________U_______UCAUU...AUG-5'\n_____________|________________|\n_____________59_______________44\n |
248 -- 254 |
51 -- 57 |
-12.639 kcal/mol |
3.2244 kcal/mol |
2.28003 kcal/mol |
246 263@LB@ | |@LB@5'-GGU...UUCCC CAU UCCAU...UGG-3'@LB@ GUCUGGUU CGUGA@LB@ :||:|:|| |||||@LB@ UAGGCUAA GCACU@LB@3'-AUU...CGGUU U UCAUU...AUG-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -7.15 kcal/mol@LB@Hybridization Energy -12.639 kcal/mol@LB@Unfolding Energy - mRNA 3.2244 kcal/mol@LB@Unfolding Energy - sRNA 2.28003 kcal/mol@LB@@LB@Position - mRNA 247 -- 262@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 51 -- 57@LB@ |
82 |
0.001877 |
0.08053 |
b3199 |
lptC |
-13.73 |
0.002422 |
95 -- 106 |
45 -- 56 |
periplasmic membrane-anchored LPS-binding protein; LPS export protein |
|
_____________94___________107\n_____________|____________|\n5'-UAU...GCGCG____________CGCGC...UGG-3'\n______________CCGAUUACGUGA\n______________||||||||||||\n______________GGCUAAUGCACU\n3'-AUU...GUUUA____________UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
100 -- 106 |
45 -- 51 |
-18.6784 kcal/mol |
2.68909 kcal/mol |
2.27945 kcal/mol |
94 107@LB@ | |@LB@5'-UAU...GCGCG CGCGC...UGG-3'@LB@ CCGAUUACGUGA@LB@ ||||||||||||@LB@ GGCUAAUGCACU@LB@3'-AUU...GUUUA UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -18.6784 kcal/mol@LB@Unfolding Energy - mRNA 2.68909 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 95 -- 106@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 45 -- 51@LB@ |
151 |
0.006118 |
0.1406 |
b1103 |
hinT |
-6.52 |
0.328434 |
216 -- 241 |
45 -- 70 |
purine nucleoside phosphoramidase dadA activator protein |
|
_____________215________________________242\n_____________|__________________________|\n5'-CAA...AAACU_________A_____AUUCGU_____GAUCC...CGC-3'\n______________AUAUUCAGC_AAAUU______CGUGA\n______________|||||||||_||||:______|||||\n______________UAUAAGUCG_UUUAG______GCACU\n3'-AUU...GAUUU_________G_____GCUAAU_____UCAUU...AUG-5'\n_____________|__________________________|\n_____________71_________________________44\n |
218 -- 224 |
62 -- 68 |
-20.3535 kcal/mol |
5.67357 kcal/mol |
8.1779 kcal/mol |
215 242@LB@ | |@LB@5'-CAA...AAACU A AUUCGU GAUCC...CGC-3'@LB@ AUAUUCAGC AAAUU CGUGA@LB@ ||||||||| ||||: |||||@LB@ UAUAAGUCG UUUAG GCACU@LB@3'-AUU...GAUUU G GCUAAU UCAUU...AUG-5'@LB@ | |@LB@ 71 44@LB@@LB@@LB@Energy -6.52 kcal/mol@LB@Hybridization Energy -20.3535 kcal/mol@LB@Unfolding Energy - mRNA 5.67357 kcal/mol@LB@Unfolding Energy - sRNA 8.1779 kcal/mol@LB@@LB@Position - mRNA 216 -- 241@LB@Position - sRNA 45 -- 70@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 62 -- 68@LB@ |
175 |
0.007291 |
0.1466 |
b1498 |
ydeN |
-8.19 |
0.139530 |
95 -- 124 |
45 -- 67 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________94_____________________________125\n_____________|______________________________|\n5'-AUU...CUUUU______________CUAUCUCU________CUAAC...UAA-3'\n______________UUUAGCUAAAUCUG________UUAUGUGA\n______________||:|||:|||||:|________|||:||||\n______________AAGUCGGUUUAGGC________AAUGCACU\n3'-AUU...UUUAU______________U_______________UCAUU...AUG-5'\n_____________|______________________________|\n_____________68_____________________________44\n |
118 -- 124 |
45 -- 51 |
-22.2428 kcal/mol |
5.90754 kcal/mol |
8.16749 kcal/mol |
94 125@LB@ | |@LB@5'-AUU...CUUUU CUAUCUCU CUAAC...UAA-3'@LB@ UUUAGCUAAAUCUG UUAUGUGA@LB@ ||:|||:|||||:| |||:||||@LB@ AAGUCGGUUUAGGC AAUGCACU@LB@3'-AUU...UUUAU U UCAUU...AUG-5'@LB@ | |@LB@ 68 44@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -22.2428 kcal/mol@LB@Unfolding Energy - mRNA 5.90754 kcal/mol@LB@Unfolding Energy - sRNA 8.16749 kcal/mol@LB@@LB@Position - mRNA 95 -- 124@LB@Position - sRNA 45 -- 67@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 45 -- 51@LB@ |
196 |
0.008709 |
0.1558 |
b2498 |
upp |
-7.14 |
0.244299 |
249 -- 259 |
45 -- 56 |
uracil phosphoribosyltransferase |
|
_____________248__________260\n_____________|____________|\n5'-GGC...UGGGA____________GCAAG...CCG-3'\n______________CUGA_UGCGUGA\n______________|:||_|:|||||\n______________GGCU_AUGCACU\n3'-AUU...GUUUA____A_______UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
253 -- 259 |
45 -- 51 |
-12.6155 kcal/mol |
3.20986 kcal/mol |
2.27945 kcal/mol |
248 260@LB@ | |@LB@5'-GGC...UGGGA GCAAG...CCG-3'@LB@ CUGA UGCGUGA@LB@ |:|| |:|||||@LB@ GGCU AUGCACU@LB@3'-AUU...GUUUA A UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -7.14 kcal/mol@LB@Hybridization Energy -12.6155 kcal/mol@LB@Unfolding Energy - mRNA 3.20986 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 249 -- 259@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 45 -- 51@LB@ |