37 |
0.006912 |
0.5385 |
b3693 |
dgoK |
-11.15 |
0.066742 |
227 -- 259 |
71 -- 102 |
2-oxo-3-deoxygalactonate kinase |
|
_____________226________________________________260\n_____________|__________________________________|\n5'-CAG...AUUGA_________GAC___UCUG_____CC________UCAGG...CAG-3'\n______________CUGGGGAUC___CAA_____CGCG__UGGCUUUA\n______________||||:||||___|||_____|:||__||||||||\n______________GACCUCUAG___GUU_____GUGC__ACCGAAAU\n____3'-CGCCUAG_________GC____UUCAA____A_________CAAUA...AAG-5'\n_____________|__________________________________|\n_____________103________________________________70\n |
253 -- 259 |
71 -- 77 |
-30.6737 kcal/mol |
7.60256 kcal/mol |
11.9219 kcal/mol |
226 260@LB@ | |@LB@5'-CAG...AUUGA GAC UCUG CC UCAGG...CAG-3'@LB@ CUGGGGAUC CAA CGCG UGGCUUUA@LB@ ||||:|||| ||| |:|| ||||||||@LB@ GACCUCUAG GUU GUGC ACCGAAAU@LB@ 3'-CGCCUAG GC UUCAA A CAAUA...AAG-5'@LB@ | |@LB@ 103 70@LB@@LB@@LB@Energy -11.15 kcal/mol@LB@Hybridization Energy -30.6737 kcal/mol@LB@Unfolding Energy - mRNA 7.60256 kcal/mol@LB@Unfolding Energy - sRNA 11.9219 kcal/mol@LB@@LB@Position - mRNA 227 -- 259@LB@Position - sRNA 71 -- 102@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 71 -- 77@LB@ |
183 |
0.03203 |
0.5559 |
b4484 |
cpxP |
-9.38 |
0.135070 |
107 -- 120 |
71 -- 85 |
inhibitor of the cpx response; periplasmic adaptor protein |
|
_____________106_____________121\n_____________|_______________|\n5'-UAA...AUGAC_______________CACCC...GUG-3'\n______________UUUACGUUG_UUUUA\n______________||:||||||_:||||\n______________AAGUGCAAC_GAAAU\n3'-CGC...UUUUC_________C_____CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
109 -- 115 |
77 -- 83 |
-11.4265 kcal/mol |
1.48788 kcal/mol |
0.560731 kcal/mol |
106 121@LB@ | |@LB@5'-UAA...AUGAC CACCC...GUG-3'@LB@ UUUACGUUG UUUUA@LB@ ||:|||||| :||||@LB@ AAGUGCAAC GAAAU@LB@3'-CGC...UUUUC C CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -9.38 kcal/mol@LB@Hybridization Energy -11.4265 kcal/mol@LB@Unfolding Energy - mRNA 1.48788 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 107 -- 120@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 77 -- 83@LB@ |
58 |
0.01138 |
0.5385 |
b2595 |
bamD |
-7.85 |
0.240744 |
21 -- 29 |
72 -- 80 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________20________30\n_____________|_________|\n5'-CUG...ACCGA_________CGGAC...AUG-3'\n______________GUUGGUUUU\n______________|||||:|||\n______________CAACCGAAA\n3'-CGC...AAGUG_________UCAAU...AAG-5'\n_____________|_________|\n_____________81________71\n |
23 -- 29 |
72 -- 78 |
-10.2023 kcal/mol |
2.1418 kcal/mol |
0.205868 kcal/mol |
20 30@LB@ | |@LB@5'-CUG...ACCGA CGGAC...AUG-3'@LB@ GUUGGUUUU@LB@ |||||:|||@LB@ CAACCGAAA@LB@3'-CGC...AAGUG UCAAU...AAG-5'@LB@ | |@LB@ 81 71@LB@@LB@@LB@Energy -7.85 kcal/mol@LB@Hybridization Energy -10.2023 kcal/mol@LB@Unfolding Energy - mRNA 2.1418 kcal/mol@LB@Unfolding Energy - sRNA 0.205868 kcal/mol@LB@@LB@Position - mRNA 21 -- 29@LB@Position - sRNA 72 -- 80@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 72 -- 78@LB@ |
181 |
0.03179 |
0.5559 |
b3240 |
aaeB |
-9.50 |
0.128739 |
275 -- 287 |
72 -- 86 |
p-hydroxybenzoic acid efflux system component |
|
_____________274_____________288\n_____________|_______________|\n5'-ACU...GCGCU_______________CACUU...UGG-3'\n______________GUUU__GUUGGCUUU\n______________|||:__|||||||||\n______________CAAG__CAACCGAAA\n3'-CGC...GUUUU____UG_________UCAAU...AAG-5'\n_____________|_______________|\n_____________87______________71\n |
281 -- 287 |
72 -- 78 |
-13.8127 kcal/mol |
3.79774 kcal/mol |
0.514266 kcal/mol |
274 288@LB@ | |@LB@5'-ACU...GCGCU CACUU...UGG-3'@LB@ GUUU GUUGGCUUU@LB@ |||: |||||||||@LB@ CAAG CAACCGAAA@LB@3'-CGC...GUUUU UG UCAAU...AAG-5'@LB@ | |@LB@ 87 71@LB@@LB@@LB@Energy -9.50 kcal/mol@LB@Hybridization Energy -13.8127 kcal/mol@LB@Unfolding Energy - mRNA 3.79774 kcal/mol@LB@Unfolding Energy - sRNA 0.514266 kcal/mol@LB@@LB@Position - mRNA 275 -- 287@LB@Position - sRNA 72 -- 86@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 72 -- 78@LB@ |
147 |
0.02477 |
0.5467 |
b3259 |
prmA |
-10.37 |
0.091190 |
111 -- 125 |
72 -- 88 |
methyltransferase for 50S ribosomal subunit protein L11 |
|
_____________110_______________126\n_____________|_________________|\n5'-GCC...CUACU_________________CCUGG...AGG-3'\n______________AAGUUUGC__UGGCUUU\n______________|||||::|__|||||||\n______________UUCAAGUG__ACCGAAA\n3'-CGC...GCGUU________CA_______UCAAU...AAG-5'\n_____________|_________________|\n_____________89________________71\n |
119 -- 125 |
72 -- 78 |
-14.8408 kcal/mol |
3.95141 kcal/mol |
0.517175 kcal/mol |
110 126@LB@ | |@LB@5'-GCC...CUACU CCUGG...AGG-3'@LB@ AAGUUUGC UGGCUUU@LB@ |||||::| |||||||@LB@ UUCAAGUG ACCGAAA@LB@3'-CGC...GCGUU CA UCAAU...AAG-5'@LB@ | |@LB@ 89 71@LB@@LB@@LB@Energy -10.37 kcal/mol@LB@Hybridization Energy -14.8408 kcal/mol@LB@Unfolding Energy - mRNA 3.95141 kcal/mol@LB@Unfolding Energy - sRNA 0.517175 kcal/mol@LB@@LB@Position - mRNA 111 -- 125@LB@Position - sRNA 72 -- 88@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 72 -- 78@LB@ |
61 |
0.01179 |
0.5385 |
b3748 |
rbsD |
-10.58 |
0.083988 |
129 -- 141 |
72 -- 84 |
D-ribose pyranase |
|
_____________128___________142\n_____________|_____________|\n5'-GGU...UAACG_____A_______CCCAA...UCC-3'\n______________UCACG_UGGUUUU\n______________|||||_|||:|||\n______________AGUGC_ACCGAAA\n3'-CGC...UUUCA_____A_______UCAAU...AAG-5'\n_____________|_____________|\n_____________85____________71\n |
135 -- 141 |
72 -- 78 |
-14.1499 kcal/mol |
3.06287 kcal/mol |
0.509125 kcal/mol |
128 142@LB@ | |@LB@5'-GGU...UAACG A CCCAA...UCC-3'@LB@ UCACG UGGUUUU@LB@ ||||| |||:|||@LB@ AGUGC ACCGAAA@LB@3'-CGC...UUUCA A UCAAU...AAG-5'@LB@ | |@LB@ 85 71@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -14.1499 kcal/mol@LB@Unfolding Energy - mRNA 3.06287 kcal/mol@LB@Unfolding Energy - sRNA 0.509125 kcal/mol@LB@@LB@Position - mRNA 129 -- 141@LB@Position - sRNA 72 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 72 -- 78@LB@ |
171 |
0.03054 |
0.5559 |
b0045 |
yaaU |
-10.82 |
0.076059 |
142 -- 153 |
73 -- 84 |
putative MFS sugar transporter; membrane protein |
|
_____________141__________154\n_____________|____________|\n5'-AAG...ACGGC_G__________GAUAC...UAC-3'\n______________U_AUGUUGGUUU\n______________|_|:|||||:||\n______________A_UGCAACCGAA\n3'-CGC...UUUCA_G__________AUCAA...AAG-5'\n_____________|____________|\n_____________85___________72\n |
147 -- 153 |
73 -- 79 |
-12.9415 kcal/mol |
1.60777 kcal/mol |
0.508835 kcal/mol |
141 154@LB@ | |@LB@5'-AAG...ACGGC G GAUAC...UAC-3'@LB@ U AUGUUGGUUU@LB@ | |:|||||:||@LB@ A UGCAACCGAA@LB@3'-CGC...UUUCA G AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -12.9415 kcal/mol@LB@Unfolding Energy - mRNA 1.60777 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 142 -- 153@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 73 -- 79@LB@ |
101 |
0.01678 |
0.5385 |
b0452 |
tesB |
-11.66 |
0.054224 |
159 -- 170 |
73 -- 84 |
acyl-CoA thioesterase 2 |
|
_____________158__________171\n_____________|____________|\n5'-CAA...UCAAC____U_______GCUGC...AGG-3'\n______________UCAC_UUGGCUU\n______________||||_|||||||\n______________AGUG_AACCGAA\n3'-CGC...UUUCA____C_______AUCAA...AAG-5'\n_____________|____________|\n_____________85___________72\n |
164 -- 170 |
73 -- 79 |
-14.9501 kcal/mol |
2.7795 kcal/mol |
0.508835 kcal/mol |
158 171@LB@ | |@LB@5'-CAA...UCAAC U GCUGC...AGG-3'@LB@ UCAC UUGGCUU@LB@ |||| |||||||@LB@ AGUG AACCGAA@LB@3'-CGC...UUUCA C AUCAA...AAG-5'@LB@ | |@LB@ 85 72@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -14.9501 kcal/mol@LB@Unfolding Energy - mRNA 2.7795 kcal/mol@LB@Unfolding Energy - sRNA 0.508835 kcal/mol@LB@@LB@Position - mRNA 159 -- 170@LB@Position - sRNA 73 -- 84@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 73 -- 79@LB@ |
86 |
0.01521 |
0.5385 |
b0605 |
ahpC |
-11.47 |
0.058587 |
74 -- 93 |
73 -- 89 |
alkyl hydroperoxide reductase C22 subunit |
|
_____________73___________________94\n_____________|____________________|\n5'-ACC...GGUGC_________AAA____U___ACGAA...GGA-3'\n______________AAAGUUCAC___GUUG_CUU\n______________|||||||||___||||_|||\n______________UUUCAAGUG___CAAC_GAA\n3'-CGC...GGCGU________________C___AUCAA...AAG-5'\n_____________|____________________|\n_____________90___________________72\n |
76 -- 82 |
81 -- 87 |
-14.6327 kcal/mol |
2.64398 kcal/mol |
0.517627 kcal/mol |
73 94@LB@ | |@LB@5'-ACC...GGUGC AAA U ACGAA...GGA-3'@LB@ AAAGUUCAC GUUG CUU@LB@ ||||||||| |||| |||@LB@ UUUCAAGUG CAAC GAA@LB@3'-CGC...GGCGU C AUCAA...AAG-5'@LB@ | |@LB@ 90 72@LB@@LB@@LB@Energy -11.47 kcal/mol@LB@Hybridization Energy -14.6327 kcal/mol@LB@Unfolding Energy - mRNA 2.64398 kcal/mol@LB@Unfolding Energy - sRNA 0.517627 kcal/mol@LB@@LB@Position - mRNA 74 -- 93@LB@Position - sRNA 73 -- 89@LB@Position Seed - mRNA 76 -- 82@LB@Position Seed - sRNA 81 -- 87@LB@ |
117 |
0.01966 |
0.5385 |
b1203 |
ychF |
-10.24 |
0.095997 |
26 -- 41 |
73 -- 87 |
catalase inhibitor protein; ATPase K+-dependent ribosome-associated |
|
_____________25_______________42\n_____________|________________|\n5'-GAA...AAUGU_______A_A______GACCA...CAU-3'\n______________GGUUUAC_G_UGGCUU\n______________:|||:||_|_||||||\n______________UCAAGUG_C_ACCGAA\n3'-CGC...CGUUU_________A______AUCAA...AAG-5'\n_____________|________________|\n_____________88_______________72\n |
26 -- 32 |
81 -- 87 |
-15.1856 kcal/mol |
4.42747 kcal/mol |
0.51474 kcal/mol |
25 42@LB@ | |@LB@5'-GAA...AAUGU A A GACCA...CAU-3'@LB@ GGUUUAC G UGGCUU@LB@ :|||:|| | ||||||@LB@ UCAAGUG C ACCGAA@LB@3'-CGC...CGUUU A AUCAA...AAG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -15.1856 kcal/mol@LB@Unfolding Energy - mRNA 4.42747 kcal/mol@LB@Unfolding Energy - sRNA 0.51474 kcal/mol@LB@@LB@Position - mRNA 26 -- 41@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 81 -- 87@LB@ |