168 |
0.006917 |
0.1448 |
b3070 |
yqjH |
-8.25 |
0.134865 |
172 -- 181 |
49 -- 58 |
putative siderophore interacting protein |
|
_____________171________182\n_____________|__________|\n5'-ACU...GAUAU__________CAUCA...AGC-3'\n______________AUCUGAUUAC\n______________|||:||||||\n______________UAGGCUAAUG\n3'-AUU...CGGUU__________CACUU...AUG-5'\n_____________|__________|\n_____________59_________48\n |
175 -- 181 |
49 -- 55 |
-10.8722 kcal/mol |
2.31397 kcal/mol |
0.318367 kcal/mol |
171 182@LB@ | |@LB@5'-ACU...GAUAU CAUCA...AGC-3'@LB@ AUCUGAUUAC@LB@ |||:||||||@LB@ UAGGCUAAUG@LB@3'-AUU...CGGUU CACUU...AUG-5'@LB@ | |@LB@ 59 48@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -10.8722 kcal/mol@LB@Unfolding Energy - mRNA 2.31397 kcal/mol@LB@Unfolding Energy - sRNA 0.318367 kcal/mol@LB@@LB@Position - mRNA 172 -- 181@LB@Position - sRNA 49 -- 58@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 49 -- 55@LB@ |
117 |
0.003878 |
0.1165 |
b3078 |
ygjI |
-10.25 |
0.038289 |
174 -- 181 |
1 -- 8 |
putative transporter |
b0899 |
_____________173______182\n_____________|________|\n5'-GGA...ACCGC________UCAUU...UUG-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
175 -- 181 |
1 -- 7 |
-12.7576 kcal/mol |
0.416118 kcal/mol |
2.11603 kcal/mol |
173 182@LB@ | |@LB@5'-GGA...ACCGC UCAUU...UUG-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -12.7576 kcal/mol@LB@Unfolding Energy - mRNA 0.416118 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 174 -- 181@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 1 -- 7@LB@ |
133 |
0.004686 |
0.1239 |
b3081 |
fadH |
-11.00 |
0.022420 |
2 -- 21 |
1 -- 24 |
2 4-dienoyl-CoA reductase NADH and FMN-linked |
|
_____________1________________________22\n_____________|________________________|\n__________5'-U_____C__________________AUGUG...ACC-3'\n______________GGACG_CUUAUC_C___GCCCUAC\n______________|:||:_||||:|_|___:||||||\n______________CUUGU_GAAUGG_G___UGGGAUG\n3'-AUU...UCUAU_____A______A_ACA_______-5'\n_____________|_______________________|\n_____________25______________________1\n |
15 -- 21 |
1 -- 7 |
-21.5738 kcal/mol |
2.57038 kcal/mol |
8.02158 kcal/mol |
1 22@LB@ | |@LB@ 5'-U C AUGUG...ACC-3'@LB@ GGACG CUUAUC C GCCCUAC@LB@ |:||: ||||:| | :||||||@LB@ CUUGU GAAUGG G UGGGAUG@LB@3'-AUU...UCUAU A A ACA -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -21.5738 kcal/mol@LB@Unfolding Energy - mRNA 2.57038 kcal/mol@LB@Unfolding Energy - sRNA 8.02158 kcal/mol@LB@@LB@Position - mRNA 2 -- 21@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 15 -- 21@LB@Position Seed - sRNA 1 -- 7@LB@ |
147 |
0.005606 |
0.1342 |
b3085 |
ygjP |
-7.80 |
0.173342 |
13 -- 33 |
55 -- 72 |
putative metal dependent hydrolase |
|
_____________12____________________34\n_____________|_____________________|\n5'-AAC...GCAGC_________UCC____CU___CACGC...AAC-3'\n______________AAAUAUUCA___GCCG__UCC\n______________|||||||||___|||:__|||\n______________UUUAUAAGU___CGGU__AGG\n3'-AUU...CCGAU________________UU___CUAAU...AUG-5'\n_____________|_____________________|\n_____________73____________________54\n |
14 -- 20 |
65 -- 71 |
-15.2572 kcal/mol |
1.39359 kcal/mol |
6.08601 kcal/mol |
12 34@LB@ | |@LB@5'-AAC...GCAGC UCC CU CACGC...AAC-3'@LB@ AAAUAUUCA GCCG UCC@LB@ ||||||||| |||: |||@LB@ UUUAUAAGU CGGU AGG@LB@3'-AUU...CCGAU UU CUAAU...AUG-5'@LB@ | |@LB@ 73 54@LB@@LB@@LB@Energy -7.80 kcal/mol@LB@Hybridization Energy -15.2572 kcal/mol@LB@Unfolding Energy - mRNA 1.39359 kcal/mol@LB@Unfolding Energy - sRNA 6.08601 kcal/mol@LB@@LB@Position - mRNA 13 -- 33@LB@Position - sRNA 55 -- 72@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 65 -- 71@LB@ |
38 |
0.0004278 |
0.03766 |
b3092 |
uxaC |
-12.53 |
0.006845 |
206 -- 269 |
1 -- 57 |
uronate isomerase |
|
_____________205_________________________________________________________________270\n_____________|___________________________________________________________________|\n5'-UUG...AUGAC____U_____AC_____AUUUC______UU_____CC____UUGCCC___G________ACGA____GCAAA...AUU-3'\n______________UCCG_UUAUG__UGAAG________CUG__AGAUA__GAAU______GCC_UCUGUAUC____CUAC\n______________||||_|||:|__|||||________|||__|||||__|||:______:||_||||||:|____||||\n______________AGGC_AAUGC__ACUUC________GAC__UCUAU__CUUG______UGG_AGACAUGG____GAUG\n3'-AUU...GGUUU____U____________AUUUUCCA___UU___________UAGAA_____________________-5'\n_____________|__________________________________________________________________|\n_____________58_________________________________________________________________1\n |
255 -- 261 |
5 -- 11 |
-36.5836 kcal/mol |
11.3711 kcal/mol |
12.7026 kcal/mol |
205 270@LB@ | |@LB@5'-UUG...AUGAC U AC AUUUC UU CC UUGCCC G ACGA GCAAA...AUU-3'@LB@ UCCG UUAUG UGAAG CUG AGAUA GAAU GCC UCUGUAUC CUAC@LB@ |||| |||:| ||||| ||| ||||| |||: :|| ||||||:| ||||@LB@ AGGC AAUGC ACUUC GAC UCUAU CUUG UGG AGACAUGG GAUG@LB@3'-AUU...GGUUU U AUUUUCCA UU UAGAA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -36.5836 kcal/mol@LB@Unfolding Energy - mRNA 11.3711 kcal/mol@LB@Unfolding Energy - sRNA 12.7026 kcal/mol@LB@@LB@Position - mRNA 206 -- 269@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 5 -- 11@LB@ |
170 |
0.007042 |
0.1457 |
b3110 |
yhaO |
-10.02 |
0.044877 |
174 -- 180 |
1 -- 7 |
putative transporter |
|
_____________173_____181\n_____________|_______|\n5'-AAU...AAUAA_______AAAAU...UCG-3'\n______________GCCCUAC\n______________:||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
174 -- 180 |
1 -- 7 |
-12.6531 kcal/mol |
0.621925 kcal/mol |
2.03949 kcal/mol |
173 181@LB@ | |@LB@5'-AAU...AAUAA AAAAU...UCG-3'@LB@ GCCCUAC@LB@ :||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -10.02 kcal/mol@LB@Hybridization Energy -12.6531 kcal/mol@LB@Unfolding Energy - mRNA 0.621925 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 174 -- 180@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
74 |
0.001232 |
0.05856 |
b3139 |
agaC |
-9.25 |
0.073815 |
213 -- 219 |
1 -- 7 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________212_____220\n_____________|_______|\n5'-AAC...AAAUA_______UUCAG...CGA-3'\n______________ACCCUAC\n______________|||||||\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
213 -- 219 |
1 -- 7 |
-11.8132 kcal/mol |
0.545455 kcal/mol |
2.03949 kcal/mol |
212 220@LB@ | |@LB@5'-AAC...AAAUA UUCAG...CGA-3'@LB@ ACCCUAC@LB@ |||||||@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -9.25 kcal/mol@LB@Hybridization Energy -11.8132 kcal/mol@LB@Unfolding Energy - mRNA 0.545455 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 213 -- 219@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 1 -- 7@LB@ |
82 |
0.001877 |
0.08053 |
b3199 |
lptC |
-13.73 |
0.002422 |
95 -- 106 |
45 -- 56 |
periplasmic membrane-anchored LPS-binding protein; LPS export protein |
|
_____________94___________107\n_____________|____________|\n5'-UAU...GCGCG____________CGCGC...UGG-3'\n______________CCGAUUACGUGA\n______________||||||||||||\n______________GGCUAAUGCACU\n3'-AUU...GUUUA____________UCAUU...AUG-5'\n_____________|____________|\n_____________57___________44\n |
100 -- 106 |
45 -- 51 |
-18.6784 kcal/mol |
2.68909 kcal/mol |
2.27945 kcal/mol |
94 107@LB@ | |@LB@5'-UAU...GCGCG CGCGC...UGG-3'@LB@ CCGAUUACGUGA@LB@ ||||||||||||@LB@ GGCUAAUGCACU@LB@3'-AUU...GUUUA UCAUU...AUG-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -13.73 kcal/mol@LB@Hybridization Energy -18.6784 kcal/mol@LB@Unfolding Energy - mRNA 2.68909 kcal/mol@LB@Unfolding Energy - sRNA 2.27945 kcal/mol@LB@@LB@Position - mRNA 95 -- 106@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 45 -- 51@LB@ |
51 |
0.0006491 |
0.04477 |
b3224 |
nanT |
-16.25 |
0.000177 |
140 -- 151 |
1 -- 12 |
sialic acid transporter |
b4279 |
_____________139__________152\n_____________|____________|\n5'-CGC...ACGCA____________AAUUU...GUU-3'\n______________UCUGUACCCUAC\n______________||||||||||||\n______________AGACAUGGGAUG\n3'-AUU...AAUGG____________-5'\n_____________|___________|\n_____________13__________1\n |
145 -- 151 |
1 -- 7 |
-21.6524 kcal/mol |
1.93745 kcal/mol |
3.49051 kcal/mol |
139 152@LB@ | |@LB@5'-CGC...ACGCA AAUUU...GUU-3'@LB@ UCUGUACCCUAC@LB@ ||||||||||||@LB@ AGACAUGGGAUG@LB@3'-AUU...AAUGG -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -16.25 kcal/mol@LB@Hybridization Energy -21.6524 kcal/mol@LB@Unfolding Energy - mRNA 1.93745 kcal/mol@LB@Unfolding Energy - sRNA 3.49051 kcal/mol@LB@@LB@Position - mRNA 140 -- 151@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 1 -- 7@LB@ |
145 |
0.005462 |
0.1325 |
b3239 |
yhcO |
-10.93 |
0.023720 |
179 -- 225 |
2 -- 55 |
putative barnase inhibitor |
|
_____________178______________________________________________________226\n_____________|________________________________________________________|\n5'-CUA...CGCCG___A_______C___________AAC______________A_______________AUGAG...GCG-3'\n______________CGA__ACGUGA_GGU____GG_C____AGAU_GAAUAUUU_UACCUUUG_AUUUUG\n______________|||__||||||_:||____||_|____||||_|||:||:|_|||||:||_|:::|:\n______________GCU__UGCACU_UCA____CC_G____UCUA_CUUGUAGA_AUGGAGAC_UGGGAU\n3'-AUU...UUUAG___AA__________UUUU__A_ACUU____U_________________A______G-5'\n_____________|________________________________________________________|\n_____________56_______________________________________________________1\n |
213 -- 219 |
9 -- 15 |
-30.2735 kcal/mol |
6.67064 kcal/mol |
12.6986 kcal/mol |
178 226@LB@ | |@LB@5'-CUA...CGCCG A C AAC A AUGAG...GCG-3'@LB@ CGA ACGUGA GGU GG C AGAU GAAUAUUU UACCUUUG AUUUUG@LB@ ||| |||||| :|| || | |||| |||:||:| |||||:|| |:::|:@LB@ GCU UGCACU UCA CC G UCUA CUUGUAGA AUGGAGAC UGGGAU@LB@3'-AUU...UUUAG AA UUUU A ACUU U A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -10.93 kcal/mol@LB@Hybridization Energy -30.2735 kcal/mol@LB@Unfolding Energy - mRNA 6.67064 kcal/mol@LB@Unfolding Energy - sRNA 12.6986 kcal/mol@LB@@LB@Position - mRNA 179 -- 225@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 9 -- 15@LB@ |