| 198 |
0.01098 |
0.197 |
stm2803 |
N/A |
-14.51 |
0.140962 |
192 -- 262 |
36 -- 101 |
DNA-binding transcriptional regulator |
|
_____________191___________________________263\n_____________|_____________________________|\n5'-GCU...AAAAA________UA___C_____UAU_______UCGCU...CGC-3'\n______________GCAGACCA__UGC__GCGC___CAGCACA\n______________||||||||__|||__:|:|___||:||||\n______________CGUCUGGU__ACG__UGUG___GUUGUGU\n3'-UUU...CUUAG________UA___UU____UU________UGUAG...UCA-5'\n_____________|_____________________________|\n_____________102___________________________35\n |
213 -- 219 |
74 -- 80 |
-31.0005 kcal/mol |
8.41541 kcal/mol |
13.1066 kcal/mol |
191 263@LB@ | |@LB@5'-GCU...AAAAA UA C UAU UCGCU...CGC-3'@LB@ GCAGACCA UGC GCGC CAGCACA@LB@ |||||||| ||| :|:| ||:||||@LB@ CGUCUGGU ACG UGUG GUUGUGU@LB@3'-UUU...CUUAG UA UU UU UGUAG...UCA-5'@LB@ | |@LB@ 102 35@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -31.0005 kcal/mol@LB@Unfolding Energy - mRNA 8.41541 kcal/mol@LB@Unfolding Energy - sRNA 13.1066 kcal/mol@LB@@LB@Position - mRNA 192 -- 262@LB@Position - sRNA 36 -- 101@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 200 |
0.01112 |
0.198 |
stm2809 |
proV |
-15.77 |
0.088450 |
57 -- 94 |
50 -- 85 |
glycine betaine/L-proline ABC transporter ATP-binding protein |
|
_____________56______________________________________95\n_____________|_______________________________________|\n5'-UUC...AUCAC_____________C__________AUUCAU_________AAAUU...AAA-3'\n______________AGC_CGAUAGCAC____UCGCAAU______GCCAGAAGC\n______________|:|_|:|:|:|||____||:|||:______||||:||||\n______________UUG_GUUGUUGUG____AGUGUUG______CGGUUUUCG\n3'-UUU...AACGU___U_________UUGU_______GCAUU__________GGUAG...UCA-5'\n_____________|_______________________________________|\n_____________86______________________________________49\n |
65 -- 71 |
75 -- 81 |
-32.303 kcal/mol |
6.98444 kcal/mol |
14.5427 kcal/mol |
56 95@LB@ | |@LB@5'-UUC...AUCAC C AUUCAU AAAUU...AAA-3'@LB@ AGC CGAUAGCAC UCGCAAU GCCAGAAGC@LB@ |:| |:|:|:||| ||:|||: ||||:||||@LB@ UUG GUUGUUGUG AGUGUUG CGGUUUUCG@LB@3'-UUU...AACGU U UUGU GCAUU GGUAG...UCA-5'@LB@ | |@LB@ 86 49@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -32.303 kcal/mol@LB@Unfolding Energy - mRNA 6.98444 kcal/mol@LB@Unfolding Energy - sRNA 14.5427 kcal/mol@LB@@LB@Position - mRNA 57 -- 94@LB@Position - sRNA 50 -- 85@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 98 |
0.004857 |
0.1728 |
stm2811 |
proX |
-15.53 |
0.097032 |
195 -- 224 |
56 -- 84 |
glycine betaine ABC transporter substrate-binding protein |
|
_____________194________________________225\n_____________|__________________________|\n5'-GCA...AAGGA__________________________UAUUU...CUA-3'\n______________ACAACGAUGCGACAU____ACCGUGA\n______________|||||:|::|:||||____|||||:|\n______________UGUUGUUGUGUUGUA____UGGCAUU\n3'-UUU...GUUUG_______________GUGU_______CGGUU...UCA-5'\n_____________|__________________________|\n_____________85_________________________55\n |
210 -- 216 |
59 -- 65 |
-26.0076 kcal/mol |
3.5169 kcal/mol |
9.80321 kcal/mol |
194 225@LB@ | |@LB@5'-GCA...AAGGA UAUUU...CUA-3'@LB@ ACAACGAUGCGACAU ACCGUGA@LB@ |||||:|::|:|||| |||||:|@LB@ UGUUGUUGUGUUGUA UGGCAUU@LB@3'-UUU...GUUUG GUGU CGGUU...UCA-5'@LB@ | |@LB@ 85 55@LB@@LB@@LB@Energy -15.53 kcal/mol@LB@Hybridization Energy -26.0076 kcal/mol@LB@Unfolding Energy - mRNA 3.5169 kcal/mol@LB@Unfolding Energy - sRNA 9.80321 kcal/mol@LB@@LB@Position - mRNA 195 -- 224@LB@Position - sRNA 56 -- 84@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 136 |
0.006805 |
0.1774 |
stm2812 |
N/A |
-16.76 |
0.060981 |
84 -- 153 |
36 -- 90 |
MFS transporter |
|
_____________83_____________________________________________154\n_____________|______________________________________________|\n5'-GGC...AUCCG__C________CUCUCCUCAAAGC______UU_______UC_____UCCCC...UGC-3'\n______________GC_AACGCAAU_____________GCACGA__CAUCACG__ACCGU\n______________||_|||:|||:_____________:|||:|__||||||:__|||||\n______________CG_UUGUGUUG_____________UGUGUU__GUAGUGU__UGGCA\n3'-UUU...GUUAA__U________U__________________________________UUCGG...UCA-5'\n_____________|______________________________________________|\n_____________91_____________________________________________35\n |
116 -- 122 |
66 -- 72 |
-26.7431 kcal/mol |
6.46375 kcal/mol |
9.42239 kcal/mol |
83 154@LB@ | |@LB@5'-GGC...AUCCG C CUCUCCUCAAAGC UU UC UCCCC...UGC-3'@LB@ GC AACGCAAU GCACGA CAUCACG ACCGU@LB@ || |||:|||: :|||:| ||||||: |||||@LB@ CG UUGUGUUG UGUGUU GUAGUGU UGGCA@LB@3'-UUU...GUUAA U U UUCGG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -26.7431 kcal/mol@LB@Unfolding Energy - mRNA 6.46375 kcal/mol@LB@Unfolding Energy - sRNA 9.42239 kcal/mol@LB@@LB@Position - mRNA 84 -- 153@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 197 |
0.01093 |
0.197 |
stm2924 |
rpoS |
-16.80 |
0.060020 |
191 -- 216 |
36 -- 60 |
RNA polymerase sigma factor RpoS |
|
_____________190________________________________217\n_____________|__________________________________|\n___5'-CGGGAACA_________U____C___GCAAAAAA________AUGGG...AGG-3'\n______________ACAGGAAGU_AAGG_GGG________UCGCUACU\n______________|||||||||_||::_|||________|||||||:\n______________UGUCCUUCA_UUUU_CCC________AGCGAUGG\n3'-UUU...UUACA_________C____U___AUCAG___________CACCA...UCA-5'\n_____________|__________________________________|\n_____________61_________________________________35\n |
36 -- 42 |
114 -- 120 |
-31.3768 kcal/mol |
8.74888 kcal/mol |
8.99738 kcal/mol |
190 217@LB@ | |@LB@ 5'-CGGGAACA U C GCAAAAAA AUGGG...AGG-3'@LB@ ACAGGAAGU AAGG GGG UCGCUACU@LB@ ||||||||| ||:: ||| |||||||:@LB@ UGUCCUUCA UUUU CCC AGCGAUGG@LB@3'-UUU...UUACA C U AUCAG CACCA...UCA-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -31.3768 kcal/mol@LB@Unfolding Energy - mRNA 8.74888 kcal/mol@LB@Unfolding Energy - sRNA 8.99738 kcal/mol@LB@@LB@Position - mRNA 191 -- 216@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 114 -- 120@LB@ |
| 120 |
0.006002 |
0.1758 |
stm2925 |
nlpD |
-17.26 |
0.050371 |
258 -- 274 |
153 -- 170 |
lipoprotein NlpD |
|
_____________257________________275\n_____________|__________________|\n5'-GUU...UGGUU___________U______UUGUA...CGG-3'\n______________UCACUAUGG_C_GGCAGG\n______________|||||||||_|_|:||||\n______________AGUGAUACC_G_CUGUCC\n3'-UUU...UAAUU_________U_U______CAUUU...UCA-5'\n_____________|__________________|\n_____________171________________152\n |
260 -- 266 |
162 -- 168 |
-24.411 kcal/mol |
4.59255 kcal/mol |
3.4766 kcal/mol |
257 275@LB@ | |@LB@5'-GUU...UGGUU U UUGUA...CGG-3'@LB@ UCACUAUGG C GGCAGG@LB@ ||||||||| | |:||||@LB@ AGUGAUACC G CUGUCC@LB@3'-UUU...UAAUU U U CAUUU...UCA-5'@LB@ | |@LB@ 171 152@LB@@LB@@LB@Energy -17.26 kcal/mol@LB@Hybridization Energy -24.411 kcal/mol@LB@Unfolding Energy - mRNA 4.59255 kcal/mol@LB@Unfolding Energy - sRNA 3.4766 kcal/mol@LB@@LB@Position - mRNA 258 -- 274@LB@Position - sRNA 153 -- 170@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 162 -- 168@LB@ |
| 164 |
0.008796 |
0.191 |
stm2932 |
ygbE |
-13.54 |
0.199482 |
240 -- 279 |
44 -- 82 |
putative inner membrane protein |
|
_____________239________________280\n_____________|__________________|\n5'-CGC...GCGUA__________________UUUCA...CCA-3'\n______________AUAGC__CAUAACAUUAC\n______________|:|:|__||:|||||:||\n______________UGUUG__GUGUUGUAGUG\n3'-UUU...GUUUG_____UU___________UUGGC...UCA-5'\n_____________|__________________|\n_____________83_________________43\n |
250 -- 256 |
67 -- 73 |
-14.8194 kcal/mol |
1.59581 kcal/mol |
5.25507 kcal/mol |
239 280@LB@ | |@LB@5'-CGC...GCGUA UUUCA...CCA-3'@LB@ AUAGC CAUAACAUUAC@LB@ |:|:| ||:|||||:||@LB@ UGUUG GUGUUGUAGUG@LB@3'-UUU...GUUUG UU UUGGC...UCA-5'@LB@ | |@LB@ 83 43@LB@@LB@@LB@Energy -13.54 kcal/mol@LB@Hybridization Energy -14.8194 kcal/mol@LB@Unfolding Energy - mRNA 1.59581 kcal/mol@LB@Unfolding Energy - sRNA 5.25507 kcal/mol@LB@@LB@Position - mRNA 240 -- 279@LB@Position - sRNA 44 -- 82@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 113 |
0.005549 |
0.1728 |
stm2948 |
cysJ |
-13.61 |
0.194760 |
269 -- 298 |
56 -- 85 |
sulfite reductase [NADPH] flavoprotein subunit alpha |
|
_____________268_______________________299\n_____________|_________________________|\n5'-GUU...CCGCU____UUACUG_______________UGACG...UUG-3'\n______________UUGC______GAACAUAACGACGCA\n______________||||______:||||:|||:||:||\n______________AACG______UUUGUGUUGUUGUGU\n3'-UUU...UGGUU_________________________UGUAG...UCA-5'\n_____________|_________________________|\n_____________86________________________55\n |
195 -- 201 |
74 -- 80 |
-20.7575 kcal/mol |
3.67756 kcal/mol |
3.73922 kcal/mol |
268 299@LB@ | |@LB@5'-GUU...CCGCU UUACUG UGACG...UUG-3'@LB@ UUGC GAACAUAACGACGCA@LB@ |||| :||||:|||:||:||@LB@ AACG UUUGUGUUGUUGUGU@LB@3'-UUU...UGGUU UGUAG...UCA-5'@LB@ | |@LB@ 86 55@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -20.7575 kcal/mol@LB@Unfolding Energy - mRNA 3.67756 kcal/mol@LB@Unfolding Energy - sRNA 3.73922 kcal/mol@LB@@LB@Position - mRNA 269 -- 298@LB@Position - sRNA 56 -- 85@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 74 -- 80@LB@ |
| 89 |
0.004143 |
0.1596 |
stm2957 |
ygcA |
-15.40 |
0.101796 |
159 -- 208 |
35 -- 82 |
23S rRNA (uracil(1939)-C(5))-methyltransferase |
|
_____________158____________________________________________209\n_____________|______________________________________________|\n5'-AUA...UACUC_____AACG____GU_________UCAG___________UA_____AAUGA...GUC-3'\n______________UGCAA____GCGC__GACGACGCG____AUCAUAACCGU__AAGUC\n______________|||||____:|:|__:||:||:|:____||||:||||||__|||:|\n______________ACGUU____UGUG__UUGUUGUGU____UAGUGUUGGCA__UUCGG\n3'-UUU...GGUUA________________________UG____________________UUUUC...UCA-5'\n_____________|______________________________________________|\n_____________83_____________________________________________34\n |
250 -- 256 |
61 -- 67 |
-36.475 kcal/mol |
14.3441 kcal/mol |
11.8308 kcal/mol |
158 209@LB@ | |@LB@5'-AUA...UACUC AACG GU UCAG UA AAUGA...GUC-3'@LB@ UGCAA GCGC GACGACGCG AUCAUAACCGU AAGUC@LB@ ||||| :|:| :||:||:|: ||||:|||||| |||:|@LB@ ACGUU UGUG UUGUUGUGU UAGUGUUGGCA UUCGG@LB@3'-UUU...GGUUA UG UUUUC...UCA-5'@LB@ | |@LB@ 83 34@LB@@LB@@LB@Energy -15.40 kcal/mol@LB@Hybridization Energy -36.475 kcal/mol@LB@Unfolding Energy - mRNA 14.3441 kcal/mol@LB@Unfolding Energy - sRNA 11.8308 kcal/mol@LB@@LB@Position - mRNA 159 -- 208@LB@Position - sRNA 35 -- 82@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 61 -- 67@LB@ |
| 1 |
0 |
0 |
stm2982 |
gcvA |
-98.53 |
0.000000 |
1 -- 73 |
1 -- 73 |
transcriptional regulator GcvA |
|
______________1________________________________________________________________________74\n______________|________________________________________________________________________|\n___________5'-_________________________________________________________________________GCCGC...CGC-3'\n______________ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA\n3'-UUU...UGUGU_________________________________________________________________________-5'\n_____________|________________________________________________________________________|\n_____________74_______________________________________________________________________1\n |
67 -- 73 |
1 -- 7 |
-142.883 kcal/mol |
17.2949 kcal/mol |
26.5914 kcal/mol |
1 74@LB@ | |@LB@ 5'- GCCGC...CGC-3'@LB@ ACAUCACAACCGUAAGCCAAAAGCCCAUCAGAACACGCAUUCCGAUAAAACUUUUCGUUCCGGCUCAGGAAGU@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UGUAGUGUUGGCAUUCGGUUUUCGGGUAGUCUUGUGCGUAAGGCUAUUUUGAAAAGCAAGGCCGAGUCCUUCA@LB@3'-UUU...UGUGU -5'@LB@ | |@LB@ 74 1@LB@@LB@@LB@Energy -98.53 kcal/mol@LB@Hybridization Energy -142.883 kcal/mol@LB@Unfolding Energy - mRNA 17.2949 kcal/mol@LB@Unfolding Energy - sRNA 26.5914 kcal/mol@LB@@LB@Position - mRNA 1 -- 73@LB@Position - sRNA 1 -- 73@LB@Position Seed - mRNA 67 -- 73@LB@Position Seed - sRNA 1 -- 7@LB@ |
