116 |
0.009699 |
0.2693 |
b2708 |
srlQ |
-8.08 |
0.057211 |
196 -- 214 |
36 -- 49 |
D-arabinose 5-phosphate isomerase |
|
_____________195_________________215\n_____________|___________________|\n5'-UAC...GGAGA______UGAGU________ACUGA...GCG-3'\n______________GAGCAA_____GAAGCACU\n______________:|||||_____||||||||\n______________UUCGUU_____CUUCGUGA\n3'-UUU...ACGAA___________________AUUUU...CAA-5'\n_____________|___________________|\n_____________50__________________35\n |
208 -- 214 |
36 -- 42 |
-17.2491 kcal/mol |
3.12814 kcal/mol |
6.03645 kcal/mol |
195 215@LB@ | |@LB@5'-UAC...GGAGA UGAGU ACUGA...GCG-3'@LB@ GAGCAA GAAGCACU@LB@ :||||| ||||||||@LB@ UUCGUU CUUCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -17.2491 kcal/mol@LB@Unfolding Energy - mRNA 3.12814 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 196 -- 214@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 36 -- 42@LB@ |
103 |
0.00845 |
0.2642 |
b0936 |
ssuA |
-4.91 |
0.333979 |
11 -- 31 |
10 -- 40 |
aliphatic sulfonate ABC transporter periplasmic binding protein |
|
_____________10______________________________32\n_____________|_______________________________|\n5'-AGU...UAAGC_______________________________CUGCA...AUC-3'\n______________GCAC_UGAAA________GC_UCAGGAGAUC\n______________||||_|:|||________:|_:|||||:|||\n______________CGUG_AUUUU________UG_GGUCCUUUAG\n3'-UUU...UUCUU____A_____UUAAGCAA__U__________ACUAC...CAA-5'\n_____________|_______________________________|\n_____________41______________________________9\n |
25 -- 31 |
10 -- 16 |
-20.0893 kcal/mol |
5.95403 kcal/mol |
9.22048 kcal/mol |
10 32@LB@ | |@LB@5'-AGU...UAAGC CUGCA...AUC-3'@LB@ GCAC UGAAA GC UCAGGAGAUC@LB@ |||| |:||| :| :|||||:|||@LB@ CGUG AUUUU UG GGUCCUUUAG@LB@3'-UUU...UUCUU A UUAAGCAA U ACUAC...CAA-5'@LB@ | |@LB@ 41 9@LB@@LB@@LB@Energy -4.91 kcal/mol@LB@Hybridization Energy -20.0893 kcal/mol@LB@Unfolding Energy - mRNA 5.95403 kcal/mol@LB@Unfolding Energy - sRNA 9.22048 kcal/mol@LB@@LB@Position - mRNA 11 -- 31@LB@Position - sRNA 10 -- 40@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 10 -- 16@LB@ |
20 |
0.0005034 |
0.08107 |
b3962 |
sthA |
-8.00 |
0.060263 |
274 -- 291 |
37 -- 54 |
pyridine nucleotide transhydrogenase soluble |
|
_____________273________________292\n_____________|__________________|\n5'-UAC...GGGCC__G__________U____GCGUC...CAG-3'\n______________UG_UUAAGCAAGG_GCGC\n______________||_|||||||||:_||:|\n______________AC_AAUUCGUUCU_CGUG\n3'-UUU...UUUGA__G__________U____AAUUU...CAA-5'\n_____________|__________________|\n_____________55_________________36\n |
280 -- 286 |
42 -- 48 |
-21.3093 kcal/mol |
7.14965 kcal/mol |
6.1584 kcal/mol |
273 292@LB@ | |@LB@5'-UAC...GGGCC G U GCGUC...CAG-3'@LB@ UG UUAAGCAAGG GCGC@LB@ || |||||||||: ||:|@LB@ AC AAUUCGUUCU CGUG@LB@3'-UUU...UUUGA G U AAUUU...CAA-5'@LB@ | |@LB@ 55 36@LB@@LB@@LB@Energy -8.00 kcal/mol@LB@Hybridization Energy -21.3093 kcal/mol@LB@Unfolding Energy - mRNA 7.14965 kcal/mol@LB@Unfolding Energy - sRNA 6.1584 kcal/mol@LB@@LB@Position - mRNA 274 -- 291@LB@Position - sRNA 37 -- 54@LB@Position Seed - mRNA 280 -- 286@LB@Position Seed - sRNA 42 -- 48@LB@ |
102 |
0.008217 |
0.2595 |
b4220 |
tamA |
-7.38 |
0.088103 |
40 -- 47 |
39 -- 46 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________39_______48\n_____________|________|\n5'-CGC...UGUAA________GUAUU...GAC-3'\n______________CAAGAGGC\n______________|||||:||\n______________GUUCUUCG\n3'-UUU...AAUUC________UGAAU...CAA-5'\n_____________|________|\n_____________47_______38\n |
41 -- 47 |
39 -- 45 |
-10.989 kcal/mol |
0.983473 kcal/mol |
2.62555 kcal/mol |
39 48@LB@ | |@LB@5'-CGC...UGUAA GUAUU...GAC-3'@LB@ CAAGAGGC@LB@ |||||:||@LB@ GUUCUUCG@LB@3'-UUU...AAUUC UGAAU...CAA-5'@LB@ | |@LB@ 47 38@LB@@LB@@LB@Energy -7.38 kcal/mol@LB@Hybridization Energy -10.989 kcal/mol@LB@Unfolding Energy - mRNA 0.983473 kcal/mol@LB@Unfolding Energy - sRNA 2.62555 kcal/mol@LB@@LB@Position - mRNA 40 -- 47@LB@Position - sRNA 39 -- 46@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 39 -- 45@LB@ |
121 |
0.01057 |
0.2813 |
b0452 |
tesB |
-8.75 |
0.037433 |
210 -- 223 |
26 -- 40 |
acyl-CoA thioesterase 2 |
|
_____________209_____________224\n_____________|_______________|\n5'-CAA...GUCAG_______________ACUGA...AGG-3'\n______________GCGC_UAAAAAAUUU\n______________||:|_|||||||||:\n______________CGUG_AUUUUUUAAG\n3'-UUU...UUCUU____A__________CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
217 -- 223 |
26 -- 32 |
-10.9054 kcal/mol |
0.50684 kcal/mol |
1.64811 kcal/mol |
209 224@LB@ | |@LB@5'-CAA...GUCAG ACUGA...AGG-3'@LB@ GCGC UAAAAAAUUU@LB@ ||:| |||||||||:@LB@ CGUG AUUUUUUAAG@LB@3'-UUU...UUCUU A CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -10.9054 kcal/mol@LB@Unfolding Energy - mRNA 0.50684 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 26 -- 32@LB@ |
26 |
0.0007705 |
0.09021 |
b3991 |
thiG |
-9.33 |
0.025562 |
246 -- 261 |
25 -- 41 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________245_______________262\n_____________|_________________|\n5'-GCA...UUACC_____A___________CUUCU...CCG-3'\n______________GGCAC__GGGAAAUUCG\n______________:||||__:::|||||||\n______________UCGUG__UUUUUUAAGC\n3'-UUU...GUUCU_____AA__________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
255 -- 261 |
25 -- 31 |
-14.087 kcal/mol |
3.10801 kcal/mol |
1.64839 kcal/mol |
245 262@LB@ | |@LB@5'-GCA...UUACC A CUUCU...CCG-3'@LB@ GGCAC GGGAAAUUCG@LB@ :|||| :::|||||||@LB@ UCGUG UUUUUUAAGC@LB@3'-UUU...GUUCU AA AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -9.33 kcal/mol@LB@Hybridization Energy -14.087 kcal/mol@LB@Unfolding Energy - mRNA 3.10801 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 246 -- 261@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 255 -- 261@LB@Position Seed - sRNA 25 -- 31@LB@ |
93 |
0.006966 |
0.2379 |
b0436 |
tig |
-6.81 |
0.123164 |
173 -- 190 |
25 -- 42 |
peptidyl-prolyl cis/trans isomerase (trigger factor) |
|
_____________172________________191\n_____________|__________________|\n5'-UAC...UGACC_______GU__UUU____AGGUA...UCA-3'\n______________GAGCACU__GA___UUUG\n______________:||||||__:|___||:|\n______________UUCGUGA__UU___AAGC\n3'-UUU...CGUUC_______AU__UUU____AAUGU...CAA-5'\n_____________|__________________|\n_____________43_________________24\n |
173 -- 179 |
36 -- 42 |
-10.673 kcal/mol |
2.21437 kcal/mol |
1.64855 kcal/mol |
172 191@LB@ | |@LB@5'-UAC...UGACC GU UUU AGGUA...UCA-3'@LB@ GAGCACU GA UUUG@LB@ :|||||| :| ||:|@LB@ UUCGUGA UU AAGC@LB@3'-UUU...CGUUC AU UUU AAUGU...CAA-5'@LB@ | |@LB@ 43 24@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -10.673 kcal/mol@LB@Unfolding Energy - mRNA 2.21437 kcal/mol@LB@Unfolding Energy - sRNA 1.64855 kcal/mol@LB@@LB@Position - mRNA 173 -- 190@LB@Position - sRNA 25 -- 42@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 36 -- 42@LB@ |
174 |
0.01992 |
0.3669 |
b1098 |
tmk |
-8.25 |
0.051647 |
183 -- 196 |
29 -- 42 |
thymidylate kinase |
|
_____________182____________197\n_____________|______________|\n5'-UAA...UCUGA______________AAAAA...GCG-3'\n______________AAGUGCUUAAGGAA\n______________|||::|||||::||\n______________UUCGUGAAUUUUUU\n3'-UUU...CGUUC______________AAGCA...CAA-5'\n_____________|______________|\n_____________43_____________28\n |
190 -- 196 |
29 -- 35 |
-11.8447 kcal/mol |
1.97362 kcal/mol |
1.62369 kcal/mol |
182 197@LB@ | |@LB@5'-UAA...UCUGA AAAAA...GCG-3'@LB@ AAGUGCUUAAGGAA@LB@ |||::|||||::||@LB@ UUCGUGAAUUUUUU@LB@3'-UUU...CGUUC AAGCA...CAA-5'@LB@ | |@LB@ 43 28@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -11.8447 kcal/mol@LB@Unfolding Energy - mRNA 1.97362 kcal/mol@LB@Unfolding Energy - sRNA 1.62369 kcal/mol@LB@@LB@Position - mRNA 183 -- 196@LB@Position - sRNA 29 -- 42@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 29 -- 35@LB@ |
75 |
0.004391 |
0.1886 |
b3708 |
tnaA |
-6.02 |
0.191179 |
273 -- 300 |
28 -- 53 |
tryptophanase/L-cysteine desulfhydrase PLP-dependent |
|
_____________272_________________________300\n_____________|___________________________|\n5'-ACC...CUCGC_____UC__G________A___UU____-3'\n______________GCUUA__GU_AAGAGGCA_UUA__AAAU\n______________|||||__|:_||||:|||_|||__||||\n______________CGAAU__CG_UUCUUCGU_AAU__UUUA\n3'-UUU...UUGAA_____U____________G___UU____AGCAA...CAA-5'\n_____________|____________________________|\n_____________54___________________________27\n |
284 -- 290 |
38 -- 44 |
-17.9242 kcal/mol |
5.66853 kcal/mol |
6.23468 kcal/mol |
272 300@LB@ | |@LB@5'-ACC...CUCGC UC G A UU -3'@LB@ GCUUA GU AAGAGGCA UUA AAAU@LB@ ||||| |: ||||:||| ||| ||||@LB@ CGAAU CG UUCUUCGU AAU UUUA@LB@3'-UUU...UUGAA U G UU AGCAA...CAA-5'@LB@ | |@LB@ 54 27@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -17.9242 kcal/mol@LB@Unfolding Energy - mRNA 5.66853 kcal/mol@LB@Unfolding Energy - sRNA 6.23468 kcal/mol@LB@@LB@Position - mRNA 273 -- 300@LB@Position - sRNA 28 -- 53@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 38 -- 44@LB@ |
156 |
0.01673 |
0.3455 |
b0740 |
tolB |
-6.75 |
0.127692 |
202 -- 229 |
33 -- 61 |
periplasmic protein |
|
_____________201____________________________230\n_____________|______________________________|\n5'-UCC...UAUGA______AG__A_________U_________UUUUC...CCG-3'\n______________UGAAGC__GC_UUA__CGAG_AGCAUUUGG\n______________||||:|__||_|||__|:||_||||:||::\n______________ACUUUG__CG_AAU__GUUC_UCGUGAAUU\n3'-UUU...GCCCU______AA______UC____U_________UUUUA...CAA-5'\n_____________|______________________________|\n_____________62_____________________________32\n |
222 -- 228 |
34 -- 40 |
-20.0945 kcal/mol |
5.97693 kcal/mol |
7.37029 kcal/mol |
201 230@LB@ | |@LB@5'-UCC...UAUGA AG A U UUUUC...CCG-3'@LB@ UGAAGC GC UUA CGAG AGCAUUUGG@LB@ ||||:| || ||| |:|| ||||:||::@LB@ ACUUUG CG AAU GUUC UCGUGAAUU@LB@3'-UUU...GCCCU AA UC U UUUUA...CAA-5'@LB@ | |@LB@ 62 32@LB@@LB@@LB@Energy -6.75 kcal/mol@LB@Hybridization Energy -20.0945 kcal/mol@LB@Unfolding Energy - mRNA 5.97693 kcal/mol@LB@Unfolding Energy - sRNA 7.37029 kcal/mol@LB@@LB@Position - mRNA 202 -- 229@LB@Position - sRNA 33 -- 61@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 34 -- 40@LB@ |