131 |
0.01426 |
0.3575 |
b0048 |
folA |
-12.08 |
0.107221 |
135 -- 211 |
115 -- 187 |
dihydrofolate reductase |
|
_____________134_________212\n_____________|___________|\n5'-UCA...UUGUU___________GUAAU...GCA-3'\n______________UUUGUUUCAUU\n______________:|||:|||||:\n______________GAACGAAGUAG\n3'-UUU...UGGGG___________-5'\n_____________|__________|\n_____________188________115\n |
56 -- 62 |
1 -- 7 |
-10.5455 kcal/mol |
1.7602 kcal/mol |
1.03329 kcal/mol |
134 212@LB@ | |@LB@5'-UCA...UUGUU GUAAU...GCA-3'@LB@ UUUGUUUCAUU@LB@ :|||:|||||:@LB@ GAACGAAGUAG@LB@3'-UUU...UGGGG -5'@LB@ | |@LB@ 188 115@LB@@LB@@LB@Energy -12.08 kcal/mol@LB@Hybridization Energy -10.5455 kcal/mol@LB@Unfolding Energy - mRNA 1.7602 kcal/mol@LB@Unfolding Energy - sRNA 1.03329 kcal/mol@LB@@LB@Position - mRNA 135 -- 211@LB@Position - sRNA 115 -- 187@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 1 -- 7@LB@ |
132 |
0.0143 |
0.3575 |
b0147 |
ligT |
-9.89 |
0.288456 |
69 -- 117 |
16 -- 69 |
2'-5' RNA ligase |
|
_____________68__________________________________118\n_____________|___________________________________|\n5'-CCA...AAGUA______GUA_G___GCAGCAA_______C_A____ACAAA...CGG-3'\n______________AUUCAG___A_ACG_______CGGGCAA_G_CGAC\n______________|:||||___|_||:_______|:|||||_|_|:||\n______________UGAGUC___U_UGU_______GUCCGUU_C_GUUG\n3'-UUU...GGUUA______AG__G___ACUAC___________A____AAAGU...UAG-5'\n_____________|___________________________________|\n_____________70__________________________________15\n |
112 -- 118 |
155 -- 161 |
-21.4956 kcal/mol |
4.52534 kcal/mol |
8.18567 kcal/mol |
68 118@LB@ | |@LB@5'-CCA...AAGUA GUA G GCAGCAA C A ACAAA...CGG-3'@LB@ AUUCAG A ACG CGGGCAA G CGAC@LB@ |:|||| | ||: |:||||| | |:||@LB@ UGAGUC U UGU GUCCGUU C GUUG@LB@3'-UUU...GGUUA AG G ACUAC A AAAGU...UAG-5'@LB@ | |@LB@ 70 15@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -21.4956 kcal/mol@LB@Unfolding Energy - mRNA 4.52534 kcal/mol@LB@Unfolding Energy - sRNA 8.18567 kcal/mol@LB@@LB@Position - mRNA 69 -- 117@LB@Position - sRNA 16 -- 69@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 155 -- 161@LB@ |
133 |
0.01432 |
0.3575 |
b2342 |
fadI |
-11.00 |
0.176527 |
78 -- 109 |
125 -- 153 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________77________________________________110\n_____________|_________________________________|\n5'-UCC...UCUCU__UU_____CUCUC________UAGC_______UUCCC...AUG-3'\n______________UC__CUUUU_____UGU_GUCA____UCCCACU\n______________||__||||:_____||:_||||____|||||||\n______________AG__GAAAG_____ACG_CAGU____AGGGUGA\n3'-UUU...CGUUC__UU_____UCUUA___C_______________CGUAG...UAG-5'\n_____________|_________________________________|\n_____________154_______________________________124\n |
103 -- 109 |
125 -- 131 |
-19.0317 kcal/mol |
1.6674 kcal/mol |
9.91012 kcal/mol |
77 110@LB@ | |@LB@5'-UCC...UCUCU UU CUCUC UAGC UUCCC...AUG-3'@LB@ UC CUUUU UGU GUCA UCCCACU@LB@ || ||||: ||: |||| |||||||@LB@ AG GAAAG ACG CAGU AGGGUGA@LB@3'-UUU...CGUUC UU UCUUA C CGUAG...UAG-5'@LB@ | |@LB@ 154 124@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -19.0317 kcal/mol@LB@Unfolding Energy - mRNA 1.6674 kcal/mol@LB@Unfolding Energy - sRNA 9.91012 kcal/mol@LB@@LB@Position - mRNA 78 -- 109@LB@Position - sRNA 125 -- 153@LB@Position Seed - mRNA 103 -- 109@LB@Position Seed - sRNA 125 -- 131@LB@ |
134 |
0.01437 |
0.3575 |
b1798 |
leuE |
-11.20 |
0.161096 |
19 -- 44 |
168 -- 191 |
leucine efflux protein |
|
_____________18_________________________45\n_____________|__________________________|\n5'-UGC...AGAAU________________UGCCGA____UACCC...AAA-3'\n______________UUUUACGCCAGUAUUU______GCAC\n______________||||||:|||:||:|:______:|||\n______________AAAAUGUGGUUAUGAG______UGUG\n3'-UUU...CCACU________________UCAG______UACUA...UAG-5'\n_____________|__________________________|\n_____________192________________________167\n |
26 -- 32 |
178 -- 184 |
-22.4094 kcal/mol |
4.02149 kcal/mol |
4.92826 kcal/mol |
18 45@LB@ | |@LB@5'-UGC...AGAAU UGCCGA UACCC...AAA-3'@LB@ UUUUACGCCAGUAUUU GCAC@LB@ ||||||:|||:||:|: :|||@LB@ AAAAUGUGGUUAUGAG UGUG@LB@3'-UUU...CCACU UCAG UACUA...UAG-5'@LB@ | |@LB@ 192 167@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -22.4094 kcal/mol@LB@Unfolding Energy - mRNA 4.02149 kcal/mol@LB@Unfolding Energy - sRNA 4.92826 kcal/mol@LB@@LB@Position - mRNA 19 -- 44@LB@Position - sRNA 168 -- 191@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 178 -- 184@LB@ |
135 |
0.01453 |
0.3575 |
b2934 |
cmtB |
-15.85 |
0.018111 |
229 -- 275 |
145 -- 186 |
putative mannitol-specific enzyme IIA component of PTS |
|
_____________228___________________276\n_____________|_____________________|\n5'-AUA...AGAAU_____________________UCAGC...UGG-3'\n______________CAUCAAU_CUCAGUUAUACAU\n______________||:||||_||||||:|:||||\n______________GUGGUUA_GAGUCAGUGUGUA\n3'-UUU...AAAAU_______U_____________CUACG...UAG-5'\n_____________|_____________________|\n_____________187___________________144\n |
242 -- 248 |
166 -- 172 |
-24.8158 kcal/mol |
1.5387 kcal/mol |
5.06797 kcal/mol |
228 276@LB@ | |@LB@5'-AUA...AGAAU UCAGC...UGG-3'@LB@ CAUCAAU CUCAGUUAUACAU@LB@ ||:|||| ||||||:|:||||@LB@ GUGGUUA GAGUCAGUGUGUA@LB@3'-UUU...AAAAU U CUACG...UAG-5'@LB@ | |@LB@ 187 144@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -24.8158 kcal/mol@LB@Unfolding Energy - mRNA 1.5387 kcal/mol@LB@Unfolding Energy - sRNA 5.06797 kcal/mol@LB@@LB@Position - mRNA 229 -- 275@LB@Position - sRNA 145 -- 186@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 166 -- 172@LB@ |
136 |
0.01456 |
0.3575 |
b0369 |
hemB |
-9.31 |
0.367566 |
203 -- 221 |
75 -- 90 |
5-aminolevulinate dehydratase (porphobilinogen synthase) |
|
_____________202________________222\n_____________|__________________|\n5'-CCA...UAAAA_______ACCC_______GGUAU...UGC-3'\n______________CAUCCCU____UGCUUCA\n______________||:|||:____|||||||\n______________GUGGGGG____ACGAAGU\n3'-UUU...ACCCC_______A__________AG-5'\n_____________|__________________|\n_____________91_________________74\n |
153 -- 159 |
3 -- 9 |
-17.8942 kcal/mol |
1.92924 kcal/mol |
7.09151 kcal/mol |
202 222@LB@ | |@LB@5'-CCA...UAAAA ACCC GGUAU...UGC-3'@LB@ CAUCCCU UGCUUCA@LB@ ||:|||: |||||||@LB@ GUGGGGG ACGAAGU@LB@3'-UUU...ACCCC A AG-5'@LB@ | |@LB@ 91 74@LB@@LB@@LB@Energy -9.31 kcal/mol@LB@Hybridization Energy -17.8942 kcal/mol@LB@Unfolding Energy - mRNA 1.92924 kcal/mol@LB@Unfolding Energy - sRNA 7.09151 kcal/mol@LB@@LB@Position - mRNA 203 -- 221@LB@Position - sRNA 75 -- 90@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 3 -- 9@LB@ |
137 |
0.01486 |
0.3575 |
b3967 |
murI |
-16.98 |
0.010727 |
107 -- 167 |
42 -- 96 |
glutamate racemase |
|
_____________106__________________________168\n_____________|____________________________|\n5'-GUU...GACUG________ACU_____________G___UCGCU...GGU-3'\n______________GGGU_AUU___UAUCAGUAUUUAG_CAC\n______________||||_|||___:|:||:||:|:||_|||\n______________CCCA_UAA___GUGGUUAUGAGUC_GUG\n3'-UUU...GACCG____C___AAU_____________A___UGUAC...UAG-5'\n_____________|____________________________|\n_____________97___________________________41\n |
35 -- 41 |
174 -- 180 |
-22.1424 kcal/mol |
5.45848 kcal/mol |
5.03792 kcal/mol |
106 168@LB@ | |@LB@5'-GUU...GACUG ACU G UCGCU...GGU-3'@LB@ GGGU AUU UAUCAGUAUUUAG CAC@LB@ |||| ||| :|:||:||:|:|| |||@LB@ CCCA UAA GUGGUUAUGAGUC GUG@LB@3'-UUU...GACCG C AAU A UGUAC...UAG-5'@LB@ | |@LB@ 97 41@LB@@LB@@LB@Energy -16.98 kcal/mol@LB@Hybridization Energy -22.1424 kcal/mol@LB@Unfolding Energy - mRNA 5.45848 kcal/mol@LB@Unfolding Energy - sRNA 5.03792 kcal/mol@LB@@LB@Position - mRNA 107 -- 167@LB@Position - sRNA 42 -- 96@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 174 -- 180@LB@ |
138 |
0.01487 |
0.3575 |
b3771 |
ilvD |
-15.83 |
0.018324 |
35 -- 66 |
67 -- 98 |
dihydroxyacid dehydratase |
|
_____________34______67\n_____________|_______|\n5'-GCG...AAAAA_______GCACG...GUA-3'\n______________UGGGACG\n______________|||||||\n______________ACCCUGC\n3'-UUU...GCAAC_______GAAUU...UAG-5'\n_____________|_______|\n_____________99______66\n |
147 -- 153 |
87 -- 93 |
-12.7493 kcal/mol |
2.26202 kcal/mol |
4.21173 kcal/mol |
34 67@LB@ | |@LB@5'-GCG...AAAAA GCACG...GUA-3'@LB@ UGGGACG@LB@ |||||||@LB@ ACCCUGC@LB@3'-UUU...GCAAC GAAUU...UAG-5'@LB@ | |@LB@ 99 66@LB@@LB@@LB@Energy -15.83 kcal/mol@LB@Hybridization Energy -12.7493 kcal/mol@LB@Unfolding Energy - mRNA 2.26202 kcal/mol@LB@Unfolding Energy - sRNA 4.21173 kcal/mol@LB@@LB@Position - mRNA 35 -- 66@LB@Position - sRNA 67 -- 98@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 87 -- 93@LB@ |
139 |
0.01488 |
0.3575 |
b2167 |
fruA |
-12.05 |
0.108648 |
223 -- 242 |
167 -- 187 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________222___________________243\n_____________|_____________________|\n5'-CGC...UAUUG_________________G___CGCGC...AAA-3'\n______________ACGCUAAU_CUCGGUCA_GCA\n______________||:|:|||_|||:||||_:||\n______________UGUGGUUA_GAGUCAGU_UGU\n3'-UUU...UAAAA________U________G___ACUAC...UAG-5'\n_____________|_____________________|\n_____________188___________________166\n |
232 -- 238 |
171 -- 177 |
-25.758 kcal/mol |
6.7352 kcal/mol |
5.05492 kcal/mol |
222 243@LB@ | |@LB@5'-CGC...UAUUG G CGCGC...AAA-3'@LB@ ACGCUAAU CUCGGUCA GCA@LB@ ||:|:||| |||:|||| :||@LB@ UGUGGUUA GAGUCAGU UGU@LB@3'-UUU...UAAAA U G ACUAC...UAG-5'@LB@ | |@LB@ 188 166@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -25.758 kcal/mol@LB@Unfolding Energy - mRNA 6.7352 kcal/mol@LB@Unfolding Energy - sRNA 5.05492 kcal/mol@LB@@LB@Position - mRNA 223 -- 242@LB@Position - sRNA 167 -- 187@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 171 -- 177@LB@ |
140 |
0.01495 |
0.3575 |
b2415 |
ptsH |
-9.89 |
0.288161 |
112 -- 122 |
24 -- 34 |
phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) |
|
_____________111____________123\n_____________|______________|\n5'-UUG...CAAUA_____UA_______ACCGC...UUA-3'\n______________CAGGC__AAGUCGA\n______________|||||__|||||:|\n______________GUCCG__UUCAGUU\n3'-UUU...ACUAC______________GAAAG...UAG-5'\n_____________|______________|\n_____________35_____________23\n |
138 -- 144 |
150 -- 156 |
-14.4294 kcal/mol |
3.35524 kcal/mol |
6.54796 kcal/mol |
111 123@LB@ | |@LB@5'-UUG...CAAUA UA ACCGC...UUA-3'@LB@ CAGGC AAGUCGA@LB@ ||||| |||||:|@LB@ GUCCG UUCAGUU@LB@3'-UUU...ACUAC GAAAG...UAG-5'@LB@ | |@LB@ 35 23@LB@@LB@@LB@Energy -9.89 kcal/mol@LB@Hybridization Energy -14.4294 kcal/mol@LB@Unfolding Energy - mRNA 3.35524 kcal/mol@LB@Unfolding Energy - sRNA 6.54796 kcal/mol@LB@@LB@Position - mRNA 112 -- 122@LB@Position - sRNA 24 -- 34@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 150 -- 156@LB@ |