131 |
0.01234 |
0.3033 |
b4139 |
aspA |
-5.03 |
0.315570 |
237 -- 252 |
26 -- 41 |
aspartate ammonia-lyase |
|
_____________236______________253\n_____________|________________|\n5'-GAU...UGUUG_____CA_________CAGCU...ACU-3'\n______________GGUAC__GGGAAGUUC\n______________:|:||__:::||:|||\n______________UCGUG__UUUUUUAAG\n3'-UUU...GUUCU_____AA_________CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
246 -- 252 |
26 -- 32 |
-10.8102 kcal/mol |
4.127 kcal/mol |
1.64829 kcal/mol |
236 253@LB@ | |@LB@5'-GAU...UGUUG CA CAGCU...ACU-3'@LB@ GGUAC GGGAAGUUC@LB@ :|:|| :::||:|||@LB@ UCGUG UUUUUUAAG@LB@3'-UUU...GUUCU AA CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -5.03 kcal/mol@LB@Hybridization Energy -10.8102 kcal/mol@LB@Unfolding Energy - mRNA 4.127 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 237 -- 252@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 26 -- 32@LB@ |
132 |
0.01257 |
0.3067 |
b2516 |
rodZ |
-8.98 |
0.032240 |
231 -- 240 |
34 -- 43 |
MreB assembly cytoskeletal protein |
|
_____________230________241\n_____________|__________|\n5'-UAA...AAAAU__________CUACC...UUG-3'\n______________GAAGCACUUA\n______________||||||||||\n______________CUUCGUGAAU\n3'-UUU...UCGUU__________UUUUU...CAA-5'\n_____________|__________|\n_____________44_________33\n |
234 -- 240 |
34 -- 40 |
-13.7965 kcal/mol |
1.10051 kcal/mol |
3.71643 kcal/mol |
230 241@LB@ | |@LB@5'-UAA...AAAAU CUACC...UUG-3'@LB@ GAAGCACUUA@LB@ ||||||||||@LB@ CUUCGUGAAU@LB@3'-UUU...UCGUU UUUUU...CAA-5'@LB@ | |@LB@ 44 33@LB@@LB@@LB@Energy -8.98 kcal/mol@LB@Hybridization Energy -13.7965 kcal/mol@LB@Unfolding Energy - mRNA 1.10051 kcal/mol@LB@Unfolding Energy - sRNA 3.71643 kcal/mol@LB@@LB@Position - mRNA 231 -- 240@LB@Position - sRNA 34 -- 43@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 34 -- 40@LB@ |
133 |
0.0127 |
0.3077 |
b2452 |
eutH |
-4.80 |
0.352106 |
186 -- 194 |
38 -- 46 |
ethanolamine transporter |
|
_____________185_______195\n_____________|_________|\n5'-UUG...ACUAA_________AAGGC...UCC-3'\n______________CAGGGAGUA\n______________||:|:||:|\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
188 -- 194 |
38 -- 44 |
-8.62764 kcal/mol |
1.2009 kcal/mol |
2.62609 kcal/mol |
185 195@LB@ | |@LB@5'-UUG...ACUAA AAGGC...UCC-3'@LB@ CAGGGAGUA@LB@ ||:|:||:|@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -4.80 kcal/mol@LB@Hybridization Energy -8.62764 kcal/mol@LB@Unfolding Energy - mRNA 1.2009 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 186 -- 194@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 38 -- 44@LB@ |
134 |
0.01281 |
0.308 |
b3316 |
rpsS |
-8.71 |
0.038435 |
274 -- 288 |
39 -- 53 |
30S ribosomal subunit protein S19 |
|
_____________273______________289\n_____________|________________|\n5'-GCG...GGAAA__G____A________CCCUG...CUU-3'\n______________GC__GAG_CAAGAAGC\n______________||__:||_||||||||\n______________CG__UUC_GUUCUUCG\n3'-UUU...UUGAA__AA____________UGAAU...CAA-5'\n_____________|________________|\n_____________54_______________38\n |
282 -- 288 |
39 -- 45 |
-16.1876 kcal/mol |
1.46049 kcal/mol |
6.01745 kcal/mol |
273 289@LB@ | |@LB@5'-GCG...GGAAA G A CCCUG...CUU-3'@LB@ GC GAG CAAGAAGC@LB@ || :|| ||||||||@LB@ CG UUC GUUCUUCG@LB@3'-UUU...UUGAA AA UGAAU...CAA-5'@LB@ | |@LB@ 54 38@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -16.1876 kcal/mol@LB@Unfolding Energy - mRNA 1.46049 kcal/mol@LB@Unfolding Energy - sRNA 6.01745 kcal/mol@LB@@LB@Position - mRNA 274 -- 288@LB@Position - sRNA 39 -- 53@LB@Position Seed - mRNA 282 -- 288@LB@Position Seed - sRNA 39 -- 45@LB@ |
137 |
0.01315 |
0.3087 |
b2239 |
glpQ |
-7.04 |
0.107729 |
242 -- 248 |
36 -- 42 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________241_____249\n_____________|_______|\n5'-CGG...AUGAU_______AUAGU...UCA-3'\n______________GAGCACU\n______________:||||||\n______________UUCGUGA\n3'-UUU...CGUUC_______AUUUU...CAA-5'\n_____________|_______|\n_____________43______35\n |
242 -- 248 |
36 -- 42 |
-9.09813 kcal/mol |
0.455964 kcal/mol |
1.60154 kcal/mol |
241 249@LB@ | |@LB@5'-CGG...AUGAU AUAGU...UCA-3'@LB@ GAGCACU@LB@ :||||||@LB@ UUCGUGA@LB@3'-UUU...CGUUC AUUUU...CAA-5'@LB@ | |@LB@ 43 35@LB@@LB@@LB@Energy -7.04 kcal/mol@LB@Hybridization Energy -9.09813 kcal/mol@LB@Unfolding Energy - mRNA 0.455964 kcal/mol@LB@Unfolding Energy - sRNA 1.60154 kcal/mol@LB@@LB@Position - mRNA 242 -- 248@LB@Position - sRNA 36 -- 42@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 36 -- 42@LB@ |
136 |
0.01308 |
0.3087 |
b0131 |
panD |
-6.12 |
0.181240 |
260 -- 282 |
17 -- 40 |
aspartate 1-decarboxylase |
|
_____________259______________________283\n_____________|________________________|\n5'-AUU...GACCU_____AU_________________UUGAC...UUG-3'\n______________GCACU__GAAGGUUC_UUGCGCCA\n______________|||||__:||::|||_||:|:|||\n______________CGUGA__UUUUUAAG_AAUGUGGU\n3'-UUU...UUCUU_____AU________C________CCUUU...CAA-5'\n_____________|________________________|\n_____________41_______________________16\n |
268 -- 274 |
26 -- 32 |
-23.1255 kcal/mol |
7.80932 kcal/mol |
9.19627 kcal/mol |
259 283@LB@ | |@LB@5'-AUU...GACCU AU UUGAC...UUG-3'@LB@ GCACU GAAGGUUC UUGCGCCA@LB@ ||||| :||::||| ||:|:|||@LB@ CGUGA UUUUUAAG AAUGUGGU@LB@3'-UUU...UUCUU AU C CCUUU...CAA-5'@LB@ | |@LB@ 41 16@LB@@LB@@LB@Energy -6.12 kcal/mol@LB@Hybridization Energy -23.1255 kcal/mol@LB@Unfolding Energy - mRNA 7.80932 kcal/mol@LB@Unfolding Energy - sRNA 9.19627 kcal/mol@LB@@LB@Position - mRNA 260 -- 282@LB@Position - sRNA 17 -- 40@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 26 -- 32@LB@ |
135 |
0.01294 |
0.3087 |
b3785 |
wzzE |
-4.46 |
0.409883 |
275 -- 291 |
39 -- 56 |
Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
|
_____________274_________________292\n_____________|___________________|\n5'-GCU...CGUAC___________U_______UAUGG...UUA-3'\n______________CUUGU__GGGC_GGGAAGC\n______________||||:__::||_::|||||\n______________GAACG__UUCG_UUCUUCG\n3'-UUU...ACUUU_____AA____________UGAAU...CAA-5'\n_____________|___________________|\n_____________57__________________38\n |
285 -- 291 |
39 -- 45 |
-16.5835 kcal/mol |
6.01236 kcal/mol |
6.11167 kcal/mol |
274 292@LB@ | |@LB@5'-GCU...CGUAC U UAUGG...UUA-3'@LB@ CUUGU GGGC GGGAAGC@LB@ ||||: ::|| ::|||||@LB@ GAACG UUCG UUCUUCG@LB@3'-UUU...ACUUU AA UGAAU...CAA-5'@LB@ | |@LB@ 57 38@LB@@LB@@LB@Energy -4.46 kcal/mol@LB@Hybridization Energy -16.5835 kcal/mol@LB@Unfolding Energy - mRNA 6.01236 kcal/mol@LB@Unfolding Energy - sRNA 6.11167 kcal/mol@LB@@LB@Position - mRNA 275 -- 291@LB@Position - sRNA 39 -- 56@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 39 -- 45@LB@ |
138 |
0.01322 |
0.3087 |
b1523 |
yneG |
-4.22 |
0.452951 |
267 -- 281 |
24 -- 41 |
DUF4186 family protein |
|
_____________266________________282\n_____________|__________________|\n5'-AUG...GUCUG_____________G____CAGUA...AAG-3'\n______________GGCA__UGAAAGA__CGU\n______________:|||__|:|||:|__|||\n______________UCGU__AUUUUUU__GCA\n3'-UUU...GUUCU____GA_______AA___AUGUG...CAA-5'\n_____________|__________________|\n_____________42_________________23\n |
271 -- 277 |
29 -- 35 |
-8.58312 kcal/mol |
2.71204 kcal/mol |
1.64881 kcal/mol |
266 282@LB@ | |@LB@5'-AUG...GUCUG G CAGUA...AAG-3'@LB@ GGCA UGAAAGA CGU@LB@ :||| |:|||:| |||@LB@ UCGU AUUUUUU GCA@LB@3'-UUU...GUUCU GA AA AUGUG...CAA-5'@LB@ | |@LB@ 42 23@LB@@LB@@LB@Energy -4.22 kcal/mol@LB@Hybridization Energy -8.58312 kcal/mol@LB@Unfolding Energy - mRNA 2.71204 kcal/mol@LB@Unfolding Energy - sRNA 1.64881 kcal/mol@LB@@LB@Position - mRNA 267 -- 281@LB@Position - sRNA 24 -- 41@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 29 -- 35@LB@ |
139 |
0.01338 |
0.3093 |
b3765 |
yifB |
-8.91 |
0.033732 |
103 -- 139 |
26 -- 57 |
magnesium chelatase family protein and putative transcriptional regulator |
|
_____________102______________________________________140\n_____________|________________________________________|\n5'-AAA...ACUUC______ACAAA___A_____AUC__C______________ACGAA...CGA-3'\n______________ACUUGC_____UAA_CAGGA___AG_CACU___AAAAUUC\n______________||||||_____|||_||:||___||_||||___|||||||\n______________UGAACG_____AUU_GUUCU___UC_GUGA___UUUUAAG\n3'-UUU...UACUU______A_______C_______________AUU_______CAAUG...CAA-5'\n_____________|________________________________________|\n_____________58_______________________________________25\n |
133 -- 139 |
26 -- 32 |
-18.0428 kcal/mol |
2.85625 kcal/mol |
6.27605 kcal/mol |
102 140@LB@ | |@LB@5'-AAA...ACUUC ACAAA A AUC C ACGAA...CGA-3'@LB@ ACUUGC UAA CAGGA AG CACU AAAAUUC@LB@ |||||| ||| ||:|| || |||| |||||||@LB@ UGAACG AUU GUUCU UC GUGA UUUUAAG@LB@3'-UUU...UACUU A C AUU CAAUG...CAA-5'@LB@ | |@LB@ 58 25@LB@@LB@@LB@Energy -8.91 kcal/mol@LB@Hybridization Energy -18.0428 kcal/mol@LB@Unfolding Energy - mRNA 2.85625 kcal/mol@LB@Unfolding Energy - sRNA 6.27605 kcal/mol@LB@@LB@Position - mRNA 103 -- 139@LB@Position - sRNA 26 -- 57@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 26 -- 32@LB@ |
140 |
0.01344 |
0.3093 |
b0426 |
yajQ |
-3.92 |
0.510019 |
240 -- 246 |
37 -- 43 |
phage Phi6 host factor ATP/GTP binding protein |
|
_____________239_____247\n_____________|_______|\n5'-UAA...UUCAG_______GUAAC...GUA-3'\n______________GAAGCAC\n______________|||||||\n______________CUUCGUG\n3'-UUU...UCGUU_______AAUUU...CAA-5'\n_____________|_______|\n_____________44______36\n |
240 -- 246 |
37 -- 43 |
-10.1802 kcal/mol |
2.59742 kcal/mol |
3.6595 kcal/mol |
239 247@LB@ | |@LB@5'-UAA...UUCAG GUAAC...GUA-3'@LB@ GAAGCAC@LB@ |||||||@LB@ CUUCGUG@LB@3'-UUU...UCGUU AAUUU...CAA-5'@LB@ | |@LB@ 44 36@LB@@LB@@LB@Energy -3.92 kcal/mol@LB@Hybridization Energy -10.1802 kcal/mol@LB@Unfolding Energy - mRNA 2.59742 kcal/mol@LB@Unfolding Energy - sRNA 3.6595 kcal/mol@LB@@LB@Position - mRNA 240 -- 246@LB@Position - sRNA 37 -- 43@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 37 -- 43@LB@ |