169 |
0.01667 |
0.3104 |
b3575 |
yiaK |
-9.90 |
0.125874 |
198 -- 219 |
8 -- 29 |
2 3-diketo-L-gulonate reductase NADH-dependent |
|
_____________197____________________220\n_____________|______________________|\n5'-UUU...AGCCU_______AA______UU__A__AGUUA...UCG-3'\n______________GGGAUGA__GUGACA__UG_GC\n______________|||||||__:|:|||__||_||\n______________CCCUACU__UAUUGU__AC_CG\n3'-UUU...UAAGU_______AC______UU__G__CAGAAAG-5'\n_____________|______________________|\n_____________30_____________________7\n |
198 -- 204 |
23 -- 29 |
-23.0827 kcal/mol |
5.7681 kcal/mol |
7.41331 kcal/mol |
197 220@LB@ | |@LB@5'-UUU...AGCCU AA UU A AGUUA...UCG-3'@LB@ GGGAUGA GUGACA UG GC@LB@ ||||||| :|:||| || ||@LB@ CCCUACU UAUUGU AC CG@LB@3'-UUU...UAAGU AC UU G CAGAAAG-5'@LB@ | |@LB@ 30 7@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -23.0827 kcal/mol@LB@Unfolding Energy - mRNA 5.7681 kcal/mol@LB@Unfolding Energy - sRNA 7.41331 kcal/mol@LB@@LB@Position - mRNA 198 -- 219@LB@Position - sRNA 8 -- 29@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 23 -- 29@LB@ |
176 |
0.01748 |
0.3104 |
b0435 |
bolA |
-9.78 |
0.131850 |
202 -- 220 |
4 -- 22 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________201_________________221\n_____________|___________________|\n5'-UGA...UUUCA________C___A___GA_AGAAG...CCG-3'\n______________UGAUGAUA_GUG_GCG__U\n______________||||:|:|_:||_|||__|\n______________ACUAUUGU_UAC_CGC__A\n3'-UUU...CUACU________U___G___AG_AAG-5'\n_____________|___________________|\n_____________23__________________3\n |
203 -- 209 |
15 -- 21 |
-14.8727 kcal/mol |
3.8346 kcal/mol |
1.2572 kcal/mol |
201 221@LB@ | |@LB@5'-UGA...UUUCA C A GA AGAAG...CCG-3'@LB@ UGAUGAUA GUG GCG U@LB@ ||||:|:| :|| ||| |@LB@ ACUAUUGU UAC CGC A@LB@3'-UUU...CUACU U G AG AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -14.8727 kcal/mol@LB@Unfolding Energy - mRNA 3.8346 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 202 -- 220@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 15 -- 21@LB@ |
84 |
0.008129 |
0.3104 |
b2579 |
grcA |
-9.71 |
0.135356 |
279 -- 291 |
5 -- 18 |
autonomous glycyl radical cofactor |
|
_____________278____________292\n_____________|______________|\n5'-UUG...AAAAA______________GCAUC...UUG-3'\n______________GGCGAA_GCGCGUU\n______________::|:||_||||||:\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
285 -- 291 |
5 -- 11 |
-16.0784 kcal/mol |
5.14159 kcal/mol |
1.2243 kcal/mol |
278 292@LB@ | |@LB@5'-UUG...AAAAA GCAUC...UUG-3'@LB@ GGCGAA GCGCGUU@LB@ ::|:|| ||||||:@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -16.0784 kcal/mol@LB@Unfolding Energy - mRNA 5.14159 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 279 -- 291@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 5 -- 11@LB@ |
108 |
0.01118 |
0.3104 |
b2565 |
recO |
-9.71 |
0.135448 |
294 -- 300 |
5 -- 11 |
gap repair protein |
|
_____________293____300\n_____________|______|\n5'-GAA...GGCGC_______-3'\n______________GUGCGUC\n______________|:|||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
294 -- 300 |
5 -- 11 |
-11.8762 kcal/mol |
1.05403 kcal/mol |
1.11145 kcal/mol |
293 300@LB@ | |@LB@5'-GAA...GGCGC -3'@LB@ GUGCGUC@LB@ |:|||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -11.8762 kcal/mol@LB@Unfolding Energy - mRNA 1.05403 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 5 -- 11@LB@ |
186 |
0.01836 |
0.3104 |
b3521 |
yhjC |
-9.62 |
0.140197 |
158 -- 166 |
5 -- 13 |
LysR family putative transcriptional regulator |
|
_____________157_______167\n_____________|_________|\n5'-UUU...GCGAU_________ACUGU...UUU-3'\n______________AUGCGCGUU\n______________||||||||:\n______________UACGCGCAG\n3'-UUU...UUGUU_________AAAG-5'\n_____________|_________|\n_____________14________4\n |
160 -- 166 |
5 -- 11 |
-14.2497 kcal/mol |
3.47777 kcal/mol |
1.15134 kcal/mol |
157 167@LB@ | |@LB@5'-UUU...GCGAU ACUGU...UUU-3'@LB@ AUGCGCGUU@LB@ ||||||||:@LB@ UACGCGCAG@LB@3'-UUU...UUGUU AAAG-5'@LB@ | |@LB@ 14 4@LB@@LB@@LB@Energy -9.62 kcal/mol@LB@Hybridization Energy -14.2497 kcal/mol@LB@Unfolding Energy - mRNA 3.47777 kcal/mol@LB@Unfolding Energy - sRNA 1.15134 kcal/mol@LB@@LB@Position - mRNA 158 -- 166@LB@Position - sRNA 5 -- 13@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 5 -- 11@LB@ |
167 |
0.01599 |
0.3104 |
b4220 |
tamA |
-9.57 |
0.142740 |
193 -- 207 |
4 -- 21 |
translocation and assembly module for autotransporter export outer membrane subunit |
|
_____________192________________208\n_____________|__________________|\n5'-CGC...UUCAG__GA______________AUAUC...GAC-3'\n______________GA____AAAUGUGCG_CU\n______________||____|||||:|||_||\n______________CU____UUUACGCGC_GA\n3'-UUU...UACUA__AUUG_________A__AAG-5'\n_____________|__________________|\n_____________22_________________3\n |
199 -- 205 |
7 -- 13 |
-13.0971 kcal/mol |
2.26836 kcal/mol |
1.2552 kcal/mol |
192 208@LB@ | |@LB@5'-CGC...UUCAG GA AUAUC...GAC-3'@LB@ GA AAAUGUGCG CU@LB@ || |||||:||| ||@LB@ CU UUUACGCGC GA@LB@3'-UUU...UACUA AUUG A AAG-5'@LB@ | |@LB@ 22 3@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -13.0971 kcal/mol@LB@Unfolding Energy - mRNA 2.26836 kcal/mol@LB@Unfolding Energy - sRNA 1.2552 kcal/mol@LB@@LB@Position - mRNA 193 -- 207@LB@Position - sRNA 4 -- 21@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 7 -- 13@LB@ |
80 |
0.007305 |
0.3087 |
b2392 |
mntH |
-9.52 |
0.145914 |
200 -- 218 |
5 -- 21 |
manganese/divalent cation transporter |
|
_____________199_________________219\n_____________|___________________|\n5'-GCU...CACAA_________CUAU______GAGAG...UCG-3'\n______________GAUGACGAA____CGCGUU\n______________|||:||:||____|||||:\n______________CUAUUGUUU____GCGCAG\n3'-UUU...UACUA_________AC________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
202 -- 208 |
13 -- 19 |
-16.4824 kcal/mol |
5.71706 kcal/mol |
1.24955 kcal/mol |
199 219@LB@ | |@LB@5'-GCU...CACAA CUAU GAGAG...UCG-3'@LB@ GAUGACGAA CGCGUU@LB@ |||:||:|| |||||:@LB@ CUAUUGUUU GCGCAG@LB@3'-UUU...UACUA AC AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -9.52 kcal/mol@LB@Hybridization Energy -16.4824 kcal/mol@LB@Unfolding Energy - mRNA 5.71706 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 200 -- 218@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 13 -- 19@LB@ |
6 |
9.655e-05 |
0.04801 |
b4175 |
hflC |
-9.47 |
0.148653 |
186 -- 211 |
5 -- 32 |
HflB protease modulator specific for phage lambda cII repressor |
|
_____________185____________________________212\n_____________|______________________________|\n5'-UUA...CAGCG_________________________AA___AGUUA...GUU-3'\n______________UCAGGGG_GA__AUAAC_GAUGCGU__GUC\n______________||||||:_||__|||||_:|||||:__|||\n______________AGUCCCU_CU__UAUUG_UUACGCG__CAG\n3'-UUU...ACUUA_______A__AC_____U____________AAAG-5'\n_____________|______________________________|\n_____________33_____________________________4\n |
200 -- 206 |
8 -- 14 |
-26.2754 kcal/mol |
8.97237 kcal/mol |
7.8362 kcal/mol |
185 212@LB@ | |@LB@5'-UUA...CAGCG AA AGUUA...GUU-3'@LB@ UCAGGGG GA AUAAC GAUGCGU GUC@LB@ ||||||: || ||||| :|||||: |||@LB@ AGUCCCU CU UAUUG UUACGCG CAG@LB@3'-UUU...ACUUA A AC U AAAG-5'@LB@ | |@LB@ 33 4@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -26.2754 kcal/mol@LB@Unfolding Energy - mRNA 8.97237 kcal/mol@LB@Unfolding Energy - sRNA 7.8362 kcal/mol@LB@@LB@Position - mRNA 186 -- 211@LB@Position - sRNA 5 -- 32@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
100 |
0.01004 |
0.3104 |
b3166 |
truB |
-9.42 |
0.151044 |
113 -- 128 |
5 -- 18 |
tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
|
_____________112______________129\n_____________|________________|\n5'-GGC...GGUUG__G________AU___AAACC...AAC-3'\n______________AA_GGAUGCGC__GUC\n______________||_::||||||__|||\n______________UU_UUUACGCG__CAG\n3'-UUU...UACUA__G_____________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
117 -- 123 |
8 -- 14 |
-15.4757 kcal/mol |
4.82661 kcal/mol |
1.2243 kcal/mol |
112 129@LB@ | |@LB@5'-GGC...GGUUG G AU AAACC...AAC-3'@LB@ AA GGAUGCGC GUC@LB@ || ::|||||| |||@LB@ UU UUUACGCG CAG@LB@3'-UUU...UACUA G AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.42 kcal/mol@LB@Hybridization Energy -15.4757 kcal/mol@LB@Unfolding Energy - mRNA 4.82661 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 113 -- 128@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 8 -- 14@LB@ |
64 |
0.005939 |
0.3087 |
b3237 |
argR |
-9.39 |
0.153279 |
85 -- 104 |
1 -- 19 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________84____________________105\n_____________|_____________________|\n5'-ACA...AAAUU_______AUCC__________AUAAC...UGC-3'\n______________UGAUAAA____CGC_UCUUUC\n______________|:|:|||____|||_||||||\n______________AUUGUUU____GCG_AGAAAG\n3'-UUU...CUACU_______AC_____C______-5'\n_____________|____________________|\n_____________20___________________1\n |
85 -- 91 |
13 -- 19 |
-12.1021 kcal/mol |
1.46458 kcal/mol |
1.25156 kcal/mol |
84 105@LB@ | |@LB@5'-ACA...AAAUU AUCC AUAAC...UGC-3'@LB@ UGAUAAA CGC UCUUUC@LB@ |:|:||| ||| ||||||@LB@ AUUGUUU GCG AGAAAG@LB@3'-UUU...CUACU AC C -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -12.1021 kcal/mol@LB@Unfolding Energy - mRNA 1.46458 kcal/mol@LB@Unfolding Energy - sRNA 1.25156 kcal/mol@LB@@LB@Position - mRNA 85 -- 104@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 13 -- 19@LB@ |