| 57 |
0.002298 |
0.14 |
stm3921 |
wecC |
-19.39 |
0.022107 |
89 -- 132 |
46 -- 91 |
UDP-N-acetyl-D-mannosamine dehydrogenase |
|
_____________88_____________________________________133\n_____________|______________________________________|\n5'-ACC...GCGUC___U__________AAAUG____________A______GCGCC...AUA-3'\n______________UGC__GCACGACGA_____AAUAUCA_AACC_UGAGCC\n______________|||__:|||:||:|_____||:||||_||||_|:||||\n______________ACG__UGUGUUGUU_____UUGUAGU_UUGG_AUUCGG\n3'-UUU...GGUUA___UU_________GUG_________G____C______UUUUC...UCA-5'\n_____________|______________________________________|\n_____________92_____________________________________45\n |
107 -- 113 |
68 -- 74 |
-32.9193 kcal/mol |
8.51619 kcal/mol |
11.8308 kcal/mol |
88 133@LB@ | |@LB@5'-ACC...GCGUC U AAAUG A GCGCC...AUA-3'@LB@ UGC GCACGACGA AAUAUCA AACC UGAGCC@LB@ ||| :|||:||:| ||:|||| |||| |:||||@LB@ ACG UGUGUUGUU UUGUAGU UUGG AUUCGG@LB@3'-UUU...GGUUA UU GUG G C UUUUC...UCA-5'@LB@ | |@LB@ 92 45@LB@@LB@@LB@Energy -19.39 kcal/mol@LB@Hybridization Energy -32.9193 kcal/mol@LB@Unfolding Energy - mRNA 8.51619 kcal/mol@LB@Unfolding Energy - sRNA 11.8308 kcal/mol@LB@@LB@Position - mRNA 89 -- 132@LB@Position - sRNA 46 -- 91@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 68 -- 74@LB@ |
| 119 |
0.005831 |
0.1745 |
stm1998 |
umuD |
-19.31 |
0.022806 |
33 -- 72 |
46 -- 81 |
DNA polymerase V subunit UmuD |
|
_____________32___________________73\n_____________|____________________|\n5'-AGA...AAAUA____C_______________CGGAA...ACA-3'\n______________UGCG_ACAUGACAAUACAAC\n______________|||:_|||::||||:|||||\n______________ACGU_UGUGUUGUUGUGUUG\n3'-UUU...GGUUA____U_______________UAGUG...UCA-5'\n_____________|____________________|\n_____________82___________________45\n |
45 -- 51 |
72 -- 78 |
-23.5929 kcal/mol |
1.21213 kcal/mol |
3.80548 kcal/mol |
32 73@LB@ | |@LB@5'-AGA...AAAUA C CGGAA...ACA-3'@LB@ UGCG ACAUGACAAUACAAC@LB@ |||: |||::||||:|||||@LB@ ACGU UGUGUUGUUGUGUUG@LB@3'-UUU...GGUUA U UAGUG...UCA-5'@LB@ | |@LB@ 82 45@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -23.5929 kcal/mol@LB@Unfolding Energy - mRNA 1.21213 kcal/mol@LB@Unfolding Energy - sRNA 3.80548 kcal/mol@LB@@LB@Position - mRNA 33 -- 72@LB@Position - sRNA 46 -- 81@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 72 -- 78@LB@ |
| 117 |
0.005749 |
0.1738 |
stm2562 |
yfhA |
-19.31 |
0.022783 |
16 -- 66 |
47 -- 100 |
two-component system response regulator GlrR |
|
_____________15____________67\n_____________|_____________|\n5'-CUG...AGGCC_____________UCGAU...UCG-3'\n______________UUGCAAACGCAGC\n______________||||||||:||:|\n______________AACGUUUGUGUUG\n3'-UUU...UGGUU_____________UUGUG...UCA-5'\n_____________|_____________|\n_____________101___________46\n |
28 -- 34 |
80 -- 86 |
-18.759 kcal/mol |
3.6583 kcal/mol |
3.5889 kcal/mol |
15 67@LB@ | |@LB@5'-CUG...AGGCC UCGAU...UCG-3'@LB@ UUGCAAACGCAGC@LB@ ||||||||:||:|@LB@ AACGUUUGUGUUG@LB@3'-UUU...UGGUU UUGUG...UCA-5'@LB@ | |@LB@ 101 46@LB@@LB@@LB@Energy -19.31 kcal/mol@LB@Hybridization Energy -18.759 kcal/mol@LB@Unfolding Energy - mRNA 3.6583 kcal/mol@LB@Unfolding Energy - sRNA 3.5889 kcal/mol@LB@@LB@Position - mRNA 16 -- 66@LB@Position - sRNA 47 -- 100@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 81 |
0.003764 |
0.1596 |
stm0121 |
ftsL |
-18.45 |
0.031843 |
91 -- 225 |
48 -- 186 |
cell division protein FtsL |
|
_____________90__________________226\n_____________|___________________|\n5'-CGU...UGCCG__________A________GAAAA...UGC-3'\n______________GGUGAAAAAG_GGUAG_CU\n______________:|||||||||_|||||_||\n______________UCACUUUUUC_CCAUC_GA\n3'-UUU...GUCCU________________A__GCGAU...UCA-5'\n_____________|___________________|\n_____________187_________________47\n |
133 -- 139 |
129 -- 135 |
-20.6582 kcal/mol |
4.19087 kcal/mol |
6.37024 kcal/mol |
90 226@LB@ | |@LB@5'-CGU...UGCCG A GAAAA...UGC-3'@LB@ GGUGAAAAAG GGUAG CU@LB@ :||||||||| ||||| ||@LB@ UCACUUUUUC CCAUC GA@LB@3'-UUU...GUCCU A GCGAU...UCA-5'@LB@ | |@LB@ 187 47@LB@@LB@@LB@Energy -18.45 kcal/mol@LB@Hybridization Energy -20.6582 kcal/mol@LB@Unfolding Energy - mRNA 4.19087 kcal/mol@LB@Unfolding Energy - sRNA 6.37024 kcal/mol@LB@@LB@Position - mRNA 91 -- 225@LB@Position - sRNA 48 -- 186@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 129 -- 135@LB@ |
| 158 |
0.00827 |
0.1845 |
stm1712 |
acnA |
-14.47 |
0.143385 |
236 -- 294 |
48 -- 104 |
aconitate hydratase 1 |
|
_____________235_________________295\n_____________|___________________|\n5'-AUC...CAACC_______G_AU________CGCAA...GCG-3'\n______________CUGUGGA_A__CAGGGUAA\n______________||:||||_|__||||||||\n______________GAUACCU_U__GUCCCAUU\n3'-UUU...UUAGU_______G_CU________UACAU...UCA-5'\n_____________|___________________|\n_____________105_________________47\n |
167 -- 173 |
149 -- 155 |
-24.0869 kcal/mol |
10.3759 kcal/mol |
4.11594 kcal/mol |
235 295@LB@ | |@LB@5'-AUC...CAACC G AU CGCAA...GCG-3'@LB@ CUGUGGA A CAGGGUAA@LB@ ||:|||| | ||||||||@LB@ GAUACCU U GUCCCAUU@LB@3'-UUU...UUAGU G CU UACAU...UCA-5'@LB@ | |@LB@ 105 47@LB@@LB@@LB@Energy -14.47 kcal/mol@LB@Hybridization Energy -24.0869 kcal/mol@LB@Unfolding Energy - mRNA 10.3759 kcal/mol@LB@Unfolding Energy - sRNA 4.11594 kcal/mol@LB@@LB@Position - mRNA 236 -- 294@LB@Position - sRNA 48 -- 104@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 161 |
0.008343 |
0.1845 |
stm3321 |
yhbH |
-14.15 |
0.160801 |
194 -- 246 |
48 -- 88 |
ribosomal subunit interface protein |
|
_____________193______________________247\n_____________|________________________|\n5'-GAU...AAGGA______UAU_____U_________CGGAC...GGA-3'\n______________AGACAC___GCAGC_CAAUAUCAC\n______________|:||||___:||:|_|||:|||||\n______________UUUGUG___UGUUG_GUUGUAGUG\n3'-UUU...UAACG______U_______U_________UUGGC...UCA-5'\n_____________|________________________|\n_____________89_______________________47\n |
211 -- 217 |
67 -- 73 |
-22.4132 kcal/mol |
2.65406 kcal/mol |
5.48747 kcal/mol |
193 247@LB@ | |@LB@5'-GAU...AAGGA UAU U CGGAC...GGA-3'@LB@ AGACAC GCAGC CAAUAUCAC@LB@ |:|||| :||:| |||:|||||@LB@ UUUGUG UGUUG GUUGUAGUG@LB@3'-UUU...UAACG U U UUGGC...UCA-5'@LB@ | |@LB@ 89 47@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -22.4132 kcal/mol@LB@Unfolding Energy - mRNA 2.65406 kcal/mol@LB@Unfolding Energy - sRNA 5.48747 kcal/mol@LB@@LB@Position - mRNA 194 -- 246@LB@Position - sRNA 48 -- 88@LB@Position Seed - mRNA 211 -- 217@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 188 |
0.01049 |
0.1967 |
stm0290 |
N/A |
-13.50 |
0.202376 |
129 -- 157 |
48 -- 69 |
|
|
_____________128____________________________________________________158\n_____________|______________________________________________________|\n5'-UGC...UUCUC______C___CAUACCGCA____________________________UC_____UGAAA...GAA-3'\n______________AUGGAU_GAC__________UACAGGA________AGGGU_GUUUUG__CUGCC\n______________|||||:_|||__________|||||||________|||||_||:|:|__||:||\n______________UACCUG_CUG__________AUGUCCU________UCCCA_CAGAGC__GAUGG\n3'-UUU...AGUGA______U___UCCCAUUUAC_______UCACUUUU_____U_____________CACCA...UCA-5'\n_____________|______________________________________________________|\n_____________70_____________________________________________________47\n |
220 -- 226 |
139 -- 145 |
-35.7606 kcal/mol |
12.8035 kcal/mol |
12.8046 kcal/mol |
128 158@LB@ | |@LB@5'-UGC...UUCUC C CAUACCGCA UC UGAAA...GAA-3'@LB@ AUGGAU GAC UACAGGA AGGGU GUUUUG CUGCC@LB@ |||||: ||| ||||||| ||||| ||:|:| ||:||@LB@ UACCUG CUG AUGUCCU UCCCA CAGAGC GAUGG@LB@3'-UUU...AGUGA U UCCCAUUUAC UCACUUUU U CACCA...UCA-5'@LB@ | |@LB@ 70 47@LB@@LB@@LB@Energy -13.50 kcal/mol@LB@Hybridization Energy -35.7606 kcal/mol@LB@Unfolding Energy - mRNA 12.8035 kcal/mol@LB@Unfolding Energy - sRNA 12.8046 kcal/mol@LB@@LB@Position - mRNA 129 -- 157@LB@Position - sRNA 48 -- 69@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 139 -- 145@LB@ |
| 35 |
0.001151 |
0.1171 |
stm1336 |
rplT |
-16.07 |
0.079235 |
51 -- 96 |
49 -- 98 |
50S ribosomal protein L20 |
|
_____________50_________________________________________97\n_____________|__________________________________________|\n5'-ACC...AAAAA______UA____UA__________CUG_______________AUGGU...GCG-3'\n______________GC_GAC__AACG____AACGUCAC___CGU___CCGAAAGCC\n______________||_:||__|||:____|||:||||___|||___||:||||||\n______________CG_UUG__UUGU____UUGUAGUG___GCA___GGUUUUCGG\n3'-UUU...GUUAA__U___UG____UGUG________UUG___UUC_________GUAGU...UCA-5'\n_____________|__________________________________________|\n_____________99_________________________________________48\n |
75 -- 81 |
67 -- 73 |
-32.5949 kcal/mol |
8.04744 kcal/mol |
15.2217 kcal/mol |
50 97@LB@ | |@LB@5'-ACC...AAAAA UA UA CUG AUGGU...GCG-3'@LB@ GC GAC AACG AACGUCAC CGU CCGAAAGCC@LB@ || :|| |||: |||:|||| ||| ||:||||||@LB@ CG UUG UUGU UUGUAGUG GCA GGUUUUCGG@LB@3'-UUU...GUUAA U UG UGUG UUG UUC GUAGU...UCA-5'@LB@ | |@LB@ 99 48@LB@@LB@@LB@Energy -16.07 kcal/mol@LB@Hybridization Energy -32.5949 kcal/mol@LB@Unfolding Energy - mRNA 8.04744 kcal/mol@LB@Unfolding Energy - sRNA 15.2217 kcal/mol@LB@@LB@Position - mRNA 51 -- 96@LB@Position - sRNA 49 -- 98@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 152 |
0.008087 |
0.1845 |
stm0213 |
dapD |
-12.65 |
0.271269 |
222 -- 289 |
49 -- 104 |
2 3 4 5-tetrahydropyridine-2 6-dicarboxylate N-succinyltransferase |
|
_____________221______________________290\n_____________|________________________|\n5'-UUU...UUAAC_________GUU___G________UGAGA...AGG-3'\n______________AAUGCAGCA___ACA_AACGUUAU\n______________||::||:||___|||_|||:|:|:\n______________UUGUGUUGU___UGU_UUGUAGUG\n3'-UUU...AACGU_______________G________UUGGC...UCA-5'\n_____________|________________________|\n_____________105______________________48\n |
202 -- 208 |
79 -- 85 |
-17.6746 kcal/mol |
3.78795 kcal/mol |
5.3513 kcal/mol |
221 290@LB@ | |@LB@5'-UUU...UUAAC GUU G UGAGA...AGG-3'@LB@ AAUGCAGCA ACA AACGUUAU@LB@ ||::||:|| ||| |||:|:|:@LB@ UUGUGUUGU UGU UUGUAGUG@LB@3'-UUU...AACGU G UUGGC...UCA-5'@LB@ | |@LB@ 105 48@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -17.6746 kcal/mol@LB@Unfolding Energy - mRNA 3.78795 kcal/mol@LB@Unfolding Energy - sRNA 5.3513 kcal/mol@LB@@LB@Position - mRNA 222 -- 289@LB@Position - sRNA 49 -- 104@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 79 -- 85@LB@ |
| 88 |
0.00402 |
0.1596 |
stm2651 |
yfiQ |
-16.02 |
0.080775 |
116 -- 159 |
50 -- 88 |
protein acetyltransferase |
|
_____________115__________________________160\n_____________|____________________________|\n5'-CAA...AGGAA__________UCCGGGA___________AUAAA...GUA-3'\n______________AAACGCAACA_______AACGUCACAGC\n______________||||:|||||_______|||:|||||:|\n______________UUUGUGUUGU_______UUGUAGUGUUG\n3'-UUU...UAACG__________UGUG______________GCAUU...UCA-5'\n_____________|____________________________|\n_____________89___________________________49\n |
137 -- 143 |
64 -- 70 |
-25.6269 kcal/mol |
4.45838 kcal/mol |
7.90699 kcal/mol |
115 160@LB@ | |@LB@5'-CAA...AGGAA UCCGGGA AUAAA...GUA-3'@LB@ AAACGCAACA AACGUCACAGC@LB@ ||||:||||| |||:|||||:|@LB@ UUUGUGUUGU UUGUAGUGUUG@LB@3'-UUU...UAACG UGUG GCAUU...UCA-5'@LB@ | |@LB@ 89 49@LB@@LB@@LB@Energy -16.02 kcal/mol@LB@Hybridization Energy -25.6269 kcal/mol@LB@Unfolding Energy - mRNA 4.45838 kcal/mol@LB@Unfolding Energy - sRNA 7.90699 kcal/mol@LB@@LB@Position - mRNA 116 -- 159@LB@Position - sRNA 50 -- 88@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 64 -- 70@LB@ |
