64 |
0.003238 |
0.1727 |
b2578 |
eamB |
-8.70 |
0.240388 |
240 -- 262 |
70 -- 85 |
cysteine and O-acetylserine exporter |
|
_____________239_____________________263\n_____________|_______________________|\n5'-GUC...ACACC___AUUAC____AU_________ACCGA...CGC-3'\n______________CUG_____CGCU__GACGCCAGG\n______________|||_____|||:__:||:|||||\n______________GAC_____GCGG__UUGUGGUCC\n3'-UUU...CUUAU_______________________CUUUA...GUG-5'\n_____________|_______________________|\n_____________86______________________69\n |
256 -- 262 |
70 -- 76 |
-20.6717 kcal/mol |
4.69447 kcal/mol |
7.27689 kcal/mol |
239 263@LB@ | |@LB@5'-GUC...ACACC AUUAC AU ACCGA...CGC-3'@LB@ CUG CGCU GACGCCAGG@LB@ ||| |||: :||:|||||@LB@ GAC GCGG UUGUGGUCC@LB@3'-UUU...CUUAU CUUUA...GUG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -8.70 kcal/mol@LB@Hybridization Energy -20.6717 kcal/mol@LB@Unfolding Energy - mRNA 4.69447 kcal/mol@LB@Unfolding Energy - sRNA 7.27689 kcal/mol@LB@@LB@Position - mRNA 240 -- 262@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 256 -- 262@LB@Position Seed - sRNA 70 -- 76@LB@ |
65 |
0.003263 |
0.1727 |
b2584 |
pka |
-7.67 |
0.359085 |
49 -- 62 |
69 -- 82 |
protein lysine acetyltransferase |
|
_____________48_____________63\n_____________|______________|\n5'-AGG...AUGGC__G___________CGGCG...GUA-3'\n______________CG_CGAUACCGGGG\n______________||_|:|:|||:|||\n______________GC_GUUGUGGUCCC\n3'-UUU...AUGAC__G___________UUUAG...GUG-5'\n_____________|______________|\n_____________83_____________68\n |
56 -- 62 |
69 -- 75 |
-21.7159 kcal/mol |
7.18281 kcal/mol |
6.85849 kcal/mol |
48 63@LB@ | |@LB@5'-AGG...AUGGC G CGGCG...GUA-3'@LB@ CG CGAUACCGGGG@LB@ || |:|:|||:|||@LB@ GC GUUGUGGUCCC@LB@3'-UUU...AUGAC G UUUAG...GUG-5'@LB@ | |@LB@ 83 68@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -21.7159 kcal/mol@LB@Unfolding Energy - mRNA 7.18281 kcal/mol@LB@Unfolding Energy - sRNA 6.85849 kcal/mol@LB@@LB@Position - mRNA 49 -- 62@LB@Position - sRNA 69 -- 82@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 69 -- 75@LB@ |
192 |
0.01187 |
0.2159 |
b2600 |
tyrA |
-9.34 |
0.184498 |
136 -- 155 |
70 -- 86 |
fused chorismate mutase T/prephenate dehydrogenase |
|
_____________135__________________156\n_____________|____________________|\n5'-UCG...GCCUU_______G__AUU_______AUCUG...UGG-3'\n______________GCUGCGU_AA___CAUCAGG\n______________:|||||:_||___||:||||\n______________UGACGCG_UU___GUGGUCC\n3'-UUU...GCUUA_______G____________CUUUA...GUG-5'\n_____________|____________________|\n_____________87___________________69\n |
149 -- 155 |
70 -- 76 |
-22.0981 kcal/mol |
5.48162 kcal/mol |
7.27772 kcal/mol |
135 156@LB@ | |@LB@5'-UCG...GCCUU G AUU AUCUG...UGG-3'@LB@ GCUGCGU AA CAUCAGG@LB@ :|||||: || ||:||||@LB@ UGACGCG UU GUGGUCC@LB@3'-UUU...GCUUA G CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -9.34 kcal/mol@LB@Hybridization Energy -22.0981 kcal/mol@LB@Unfolding Energy - mRNA 5.48162 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 136 -- 155@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 70 -- 76@LB@ |
154 |
0.009082 |
0.2059 |
b2676 |
nrdF |
-13.94 |
0.023769 |
159 -- 176 |
53 -- 69 |
ribonucleoside-diphosphate reductase 2 beta subunit ferritin-like protein |
|
_____________158________________177\n_____________|__________________|\n5'-AAG...GCACU______GAA_________UCCUG...CAG-3'\n______________GAAAUU___GGCUGCGUC\n______________|||||:___|||||||:|\n______________CUUUAG___CCGACGCGG\n3'-UUU...GGUCC______AA__________CAUUU...GUG-5'\n_____________|__________________|\n_____________70_________________52\n |
170 -- 176 |
53 -- 59 |
-23.1658 kcal/mol |
2.38862 kcal/mol |
6.83371 kcal/mol |
158 177@LB@ | |@LB@5'-AAG...GCACU GAA UCCUG...CAG-3'@LB@ GAAAUU GGCUGCGUC@LB@ |||||: |||||||:|@LB@ CUUUAG CCGACGCGG@LB@3'-UUU...GGUCC AA CAUUU...GUG-5'@LB@ | |@LB@ 70 52@LB@@LB@@LB@Energy -13.94 kcal/mol@LB@Hybridization Energy -23.1658 kcal/mol@LB@Unfolding Energy - mRNA 2.38862 kcal/mol@LB@Unfolding Energy - sRNA 6.83371 kcal/mol@LB@@LB@Position - mRNA 159 -- 176@LB@Position - sRNA 53 -- 69@LB@Position Seed - mRNA 170 -- 176@LB@Position Seed - sRNA 53 -- 59@LB@ |
156 |
0.009123 |
0.2059 |
b2683 |
ygaH |
-13.79 |
0.025463 |
164 -- 213 |
27 -- 86 |
putative L-valine exporter norvaline resistance protein |
|
_____________163______________________________________________________________214\n_____________|________________________________________________________________|\n5'-AUU...GCCUC_________________CAU________AAGGA_____C_________________C_______UUCUG...CAA-3'\n______________ACUGCGUUAAU_CCAGG____UC_UGGC_____GCGCC____________GAUGAG_UAUGAGG\n______________||||||::||:_|||||____||_||||_____|||||____________||||||_||::|||\n______________UGACGCGGUUG_GGUCC____AG_ACCG_____CGCGG____________CUACUC_AUGUUCC\n3'-UUU...GCUUA___________U_____CUUU__A____A_________CAUUUAAUAAUA______A_______CGUGU...GUG-5'\n_____________|________________________________________________________________|\n_____________87_______________________________________________________________26\n |
207 -- 213 |
27 -- 33 |
-50.2075 kcal/mol |
19.3484 kcal/mol |
17.0667 kcal/mol |
163 214@LB@ | |@LB@5'-AUU...GCCUC CAU AAGGA C C UUCUG...CAA-3'@LB@ ACUGCGUUAAU CCAGG UC UGGC GCGCC GAUGAG UAUGAGG@LB@ ||||||::||: ||||| || |||| ||||| |||||| ||::|||@LB@ UGACGCGGUUG GGUCC AG ACCG CGCGG CUACUC AUGUUCC@LB@3'-UUU...GCUUA U CUUU A A CAUUUAAUAAUA A CGUGU...GUG-5'@LB@ | |@LB@ 87 26@LB@@LB@@LB@Energy -13.79 kcal/mol@LB@Hybridization Energy -50.2075 kcal/mol@LB@Unfolding Energy - mRNA 19.3484 kcal/mol@LB@Unfolding Energy - sRNA 17.0667 kcal/mol@LB@@LB@Position - mRNA 164 -- 213@LB@Position - sRNA 27 -- 86@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 27 -- 33@LB@ |
94 |
0.005015 |
0.1855 |
b2703 |
srlE |
-7.35 |
0.404948 |
254 -- 271 |
70 -- 86 |
glucitol/sorbitol-specific enzyme IIB component of PTS |
|
_____________253_________________272\n_____________|___________________|\n5'-GAA...CUUGA____AAA____________AAAAA...GUA-3'\n______________GCUG___GCC_ACGCCGGG\n______________:|||___|||_||:||:||\n______________UGAC___CGG_UGUGGUCC\n3'-UUU...GCUUA____G_____U________CUUUA...GUG-5'\n_____________|___________________|\n_____________87__________________69\n |
265 -- 271 |
70 -- 76 |
-23.089 kcal/mol |
8.46506 kcal/mol |
7.27772 kcal/mol |
253 272@LB@ | |@LB@5'-GAA...CUUGA AAA AAAAA...GUA-3'@LB@ GCUG GCC ACGCCGGG@LB@ :||| ||| ||:||:||@LB@ UGAC CGG UGUGGUCC@LB@3'-UUU...GCUUA G U CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -23.089 kcal/mol@LB@Unfolding Energy - mRNA 8.46506 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 254 -- 271@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 70 -- 76@LB@ |
52 |
0.002619 |
0.1727 |
b2720 |
hycF |
-12.75 |
0.040951 |
8 -- 55 |
44 -- 94 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________7______________________________________________________56\n_____________|______________________________________________________|\n____5'-CGACCCU____UAC_________GG_________________CCGA_______CU______CGGUA...CAG-3'\n______________GCGC___AUGCUGCGC__CAACACC______GUUU____UGCGCCG__GAUUAU\n______________||||___||:||||||__|||||||______:|:|____|||||||__:|||||\n______________CGCG___UAUGACGCG__GUUGUGG______UAGA____ACGCGGC__UUAAUA\n3'-UUU...CCCCA____CU___________________UCCCUU____ACCG_______AU______AUACU...GUG-5'\n_____________|______________________________________________________|\n_____________95_____________________________________________________43\n |
41 -- 47 |
52 -- 58 |
-46.3174 kcal/mol |
16.2176 kcal/mol |
17.3533 kcal/mol |
7 56@LB@ | |@LB@ 5'-CGACCCU UAC GG CCGA CU CGGUA...CAG-3'@LB@ GCGC AUGCUGCGC CAACACC GUUU UGCGCCG GAUUAU@LB@ |||| ||:|||||| ||||||| :|:| ||||||| :|||||@LB@ CGCG UAUGACGCG GUUGUGG UAGA ACGCGGC UUAAUA@LB@3'-UUU...CCCCA CU UCCCUU ACCG AU AUACU...GUG-5'@LB@ | |@LB@ 95 43@LB@@LB@@LB@Energy -12.75 kcal/mol@LB@Hybridization Energy -46.3174 kcal/mol@LB@Unfolding Energy - mRNA 16.2176 kcal/mol@LB@Unfolding Energy - sRNA 17.3533 kcal/mol@LB@@LB@Position - mRNA 8 -- 55@LB@Position - sRNA 44 -- 94@LB@Position Seed - mRNA 41 -- 47@LB@Position Seed - sRNA 52 -- 58@LB@ |
103 |
0.005609 |
0.1855 |
b2912 |
fau |
-11.92 |
0.059425 |
103 -- 124 |
64 -- 85 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________102____________________125\n_____________|______________________|\n5'-GAA...ACAGC_____G_______UC_______CCCUU...UGG-3'\n______________CUGCG_CGGCAUC__GGAGAUU\n______________|||||_|::||:|__|||:||:\n______________GACGC_GUUGUGG__CCUUUAG\n3'-UUU...CUUAU_____G_______UC_______AACCG...GUG-5'\n_____________|______________________|\n_____________86_____________________63\n |
118 -- 124 |
64 -- 70 |
-27.7471 kcal/mol |
8.44142 kcal/mol |
7.38387 kcal/mol |
102 125@LB@ | |@LB@5'-GAA...ACAGC G UC CCCUU...UGG-3'@LB@ CUGCG CGGCAUC GGAGAUU@LB@ ||||| |::||:| |||:||:@LB@ GACGC GUUGUGG CCUUUAG@LB@3'-UUU...CUUAU G UC AACCG...GUG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -27.7471 kcal/mol@LB@Unfolding Energy - mRNA 8.44142 kcal/mol@LB@Unfolding Energy - sRNA 7.38387 kcal/mol@LB@@LB@Position - mRNA 103 -- 124@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 64 -- 70@LB@ |
126 |
0.006849 |
0.1914 |
b2930 |
yggF |
-13.28 |
0.032133 |
176 -- 191 |
68 -- 83 |
fructose 1 6 bisphosphatase isozyme |
|
_____________175______________192\n_____________|________________|\n5'-AUC...AUUUG________________GGCCG...GCC-3'\n______________GCGUUGAUAUCGGGGA\n______________|||:::|:|:|:||||\n______________CGCGGUUGUGGUCCCU\n3'-UUU...UAUGA________________UUAGA...GUG-5'\n_____________|________________|\n_____________84_______________67\n |
185 -- 191 |
68 -- 74 |
-24.7766 kcal/mol |
4.1491 kcal/mol |
7.34657 kcal/mol |
175 192@LB@ | |@LB@5'-AUC...AUUUG GGCCG...GCC-3'@LB@ GCGUUGAUAUCGGGGA@LB@ |||:::|:|:|:||||@LB@ CGCGGUUGUGGUCCCU@LB@3'-UUU...UAUGA UUAGA...GUG-5'@LB@ | |@LB@ 84 67@LB@@LB@@LB@Energy -13.28 kcal/mol@LB@Hybridization Energy -24.7766 kcal/mol@LB@Unfolding Energy - mRNA 4.1491 kcal/mol@LB@Unfolding Energy - sRNA 7.34657 kcal/mol@LB@@LB@Position - mRNA 176 -- 191@LB@Position - sRNA 68 -- 83@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 68 -- 74@LB@ |
115 |
0.006085 |
0.1855 |
b3030 |
parE |
-11.34 |
0.077071 |
10 -- 31 |
65 -- 86 |
DNA topoisomerase IV subunit B |
|
_____________9______________________32\n_____________|______________________|\n5'-UUU...AUCUG_____UG_____GAC_______GAAGU...ACC-3'\n______________GCUGC__CAACA___GGGAGAU\n______________:||||__|||||___||||:||\n______________UGACG__GUUGU___CCCUUUA\n3'-UUU...GCUUA_____CG_____GGU_______GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
25 -- 31 |
65 -- 71 |
-24.4704 kcal/mol |
5.74549 kcal/mol |
7.38332 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...AUCUG UG GAC GAAGU...ACC-3'@LB@ GCUGC CAACA GGGAGAU@LB@ :|||| ||||| ||||:||@LB@ UGACG GUUGU CCCUUUA@LB@3'-UUU...GCUUA CG GGU GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -24.4704 kcal/mol@LB@Unfolding Energy - mRNA 5.74549 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 65 -- 71@LB@ |