121 |
0.02422 |
0.6177 |
b0754 |
aroG |
-7.67 |
0.121074 |
238 -- 245 |
47 -- 54 |
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase phenylalanine repressible |
|
_____________237______246\n_____________|________|\n5'-CUU...AGAAA________UUACU...CGA-3'\n______________UCAAAGAG\n______________||||||||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
239 -- 245 |
47 -- 53 |
-9.80538 kcal/mol |
1.24089 kcal/mol |
0.897871 kcal/mol |
237 246@LB@ | |@LB@5'-CUU...AGAAA UUACU...CGA-3'@LB@ UCAAAGAG@LB@ ||||||||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -7.67 kcal/mol@LB@Hybridization Energy -9.80538 kcal/mol@LB@Unfolding Energy - mRNA 1.24089 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 238 -- 245@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 47 -- 53@LB@ |
122 |
0.02427 |
0.6177 |
b1116 |
lolC |
-7.56 |
0.127136 |
206 -- 233 |
55 -- 74 |
lipoprotein-releasing system transmembrane protein |
|
_____________205__________________________234\n_____________|____________________________|\n5'-GUA...AUGUA____CC_______CUAUUU_________CGUUA...GCA-3'\n______________CCAA__UGUCGCU______AUUGGCCUG\n______________||||__|:|||||______|||||||:|\n______________GGUU__AUAGCGA______UAACCGGGC\n3'-UUU...UUACC____________________________AGUUU...ACA-5'\n_____________|____________________________|\n_____________75___________________________54\n |
212 -- 218 |
64 -- 70 |
-24.394 kcal/mol |
5.52374 kcal/mol |
11.3119 kcal/mol |
205 234@LB@ | |@LB@5'-GUA...AUGUA CC CUAUUU CGUUA...GCA-3'@LB@ CCAA UGUCGCU AUUGGCCUG@LB@ |||| |:||||| |||||||:|@LB@ GGUU AUAGCGA UAACCGGGC@LB@3'-UUU...UUACC AGUUU...ACA-5'@LB@ | |@LB@ 75 54@LB@@LB@@LB@Energy -7.56 kcal/mol@LB@Hybridization Energy -24.394 kcal/mol@LB@Unfolding Energy - mRNA 5.52374 kcal/mol@LB@Unfolding Energy - sRNA 11.3119 kcal/mol@LB@@LB@Position - mRNA 206 -- 233@LB@Position - sRNA 55 -- 74@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 64 -- 70@LB@ |
123 |
0.02427 |
0.6177 |
b4485 |
ytfR |
-5.89 |
0.261942 |
32 -- 42 |
44 -- 54 |
putative sugar ABC transporter ATPase |
|
_____________31__________43\n_____________|___________|\n5'-CCU...AAGAA_______A___GAAAA...GCC-3'\n______________UUAGAGA_GAA\n______________|:|:|||_|||\n______________AGUUUCU_CUU\n3'-UUU...CGGGC_______C___AAAGU...ACA-5'\n_____________|___________|\n_____________55__________43\n |
32 -- 38 |
48 -- 54 |
-7.06152 kcal/mol |
0.22708 kcal/mol |
0.939671 kcal/mol |
31 43@LB@ | |@LB@5'-CCU...AAGAA A GAAAA...GCC-3'@LB@ UUAGAGA GAA@LB@ |:|:||| |||@LB@ AGUUUCU CUU@LB@3'-UUU...CGGGC C AAAGU...ACA-5'@LB@ | |@LB@ 55 43@LB@@LB@@LB@Energy -5.89 kcal/mol@LB@Hybridization Energy -7.06152 kcal/mol@LB@Unfolding Energy - mRNA 0.22708 kcal/mol@LB@Unfolding Energy - sRNA 0.939671 kcal/mol@LB@@LB@Position - mRNA 32 -- 42@LB@Position - sRNA 44 -- 54@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 48 -- 54@LB@ |
124 |
0.02431 |
0.6177 |
b2044 |
wcaL |
-7.42 |
0.135034 |
145 -- 156 |
45 -- 56 |
putative glycosyl transferase |
|
_____________144__________157\n_____________|____________|\n5'-GGG...GUGAG_______C____AUGCA...AGA-3'\n______________CGUCAGA_AGGA\n______________|||||:|_||||\n______________GCAGUUU_UCCU\n3'-UUU...ACCGG_______C____UAAAG...ACA-5'\n_____________|____________|\n_____________57___________44\n |
145 -- 151 |
50 -- 56 |
-12.5799 kcal/mol |
4.21745 kcal/mol |
0.938337 kcal/mol |
144 157@LB@ | |@LB@5'-GGG...GUGAG C AUGCA...AGA-3'@LB@ CGUCAGA AGGA@LB@ |||||:| ||||@LB@ GCAGUUU UCCU@LB@3'-UUU...ACCGG C UAAAG...ACA-5'@LB@ | |@LB@ 57 44@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -12.5799 kcal/mol@LB@Unfolding Energy - mRNA 4.21745 kcal/mol@LB@Unfolding Energy - sRNA 0.938337 kcal/mol@LB@@LB@Position - mRNA 145 -- 156@LB@Position - sRNA 45 -- 56@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 50 -- 56@LB@ |
125 |
0.02442 |
0.6177 |
b3181 |
greA |
-6.11 |
0.239901 |
243 -- 260 |
40 -- 56 |
transcript cleavage factor |
|
_____________242_________________261\n_____________|___________________|\n5'-CGC...AAUUA__________CU_______CUGAA...UCG-3'\n______________CG_CGAAGAG__GGAUUUU\n______________||_|:|||||__|:||||:\n______________GC_GUUUCUC__CUUAAAG\n3'-UUU...ACCGG__A________________UAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________39\n |
245 -- 251 |
47 -- 53 |
-12.1125 kcal/mol |
4.98158 kcal/mol |
1.02557 kcal/mol |
242 261@LB@ | |@LB@5'-CGC...AAUUA CU CUGAA...UCG-3'@LB@ CG CGAAGAG GGAUUUU@LB@ || |:||||| |:||||:@LB@ GC GUUUCUC CUUAAAG@LB@3'-UUU...ACCGG A UAAAA...ACA-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -6.11 kcal/mol@LB@Hybridization Energy -12.1125 kcal/mol@LB@Unfolding Energy - mRNA 4.98158 kcal/mol@LB@Unfolding Energy - sRNA 1.02557 kcal/mol@LB@@LB@Position - mRNA 243 -- 260@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 47 -- 53@LB@ |
126 |
0.02445 |
0.6177 |
b4364 |
yjjP |
-5.95 |
0.256190 |
188 -- 200 |
42 -- 53 |
DUF1212 family inner membrane protein |
|
_____________187___________201\n_____________|_____________|\n5'-UCA...UAUGA_______C_____AUGCA...UUU-3'\n______________CAAAGGG_GAGUU\n______________|||||:|_||:||\n______________GUUUCUC_CUUAA\n3'-UUU...GGGCA_____________AGUAA...ACA-5'\n_____________|_____________|\n_____________54____________41\n |
188 -- 194 |
47 -- 53 |
-11.6429 kcal/mol |
4.76073 kcal/mol |
0.933904 kcal/mol |
187 201@LB@ | |@LB@5'-UCA...UAUGA C AUGCA...UUU-3'@LB@ CAAAGGG GAGUU@LB@ |||||:| ||:||@LB@ GUUUCUC CUUAA@LB@3'-UUU...GGGCA AGUAA...ACA-5'@LB@ | |@LB@ 54 41@LB@@LB@@LB@Energy -5.95 kcal/mol@LB@Hybridization Energy -11.6429 kcal/mol@LB@Unfolding Energy - mRNA 4.76073 kcal/mol@LB@Unfolding Energy - sRNA 0.933904 kcal/mol@LB@@LB@Position - mRNA 188 -- 200@LB@Position - sRNA 42 -- 53@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 47 -- 53@LB@ |
127 |
0.0247 |
0.6177 |
b3306 |
rpsH |
-8.61 |
0.078593 |
53 -- 64 |
46 -- 57 |
30S ribosomal subunit protein S8 |
|
_____________52___________65\n_____________|____________|\n5'-AGC...CGCUG________C___UCGUC...AAG-3'\n______________CCGUCAAA_AGG\n______________||||||||_|||\n______________GGCAGUUU_UCC\n3'-UUU...AACCG________C___UUAAA...ACA-5'\n_____________|____________|\n_____________58___________45\n |
54 -- 60 |
50 -- 56 |
-14.2597 kcal/mol |
2.91134 kcal/mol |
2.7365 kcal/mol |
52 65@LB@ | |@LB@5'-AGC...CGCUG C UCGUC...AAG-3'@LB@ CCGUCAAA AGG@LB@ |||||||| |||@LB@ GGCAGUUU UCC@LB@3'-UUU...AACCG C UUAAA...ACA-5'@LB@ | |@LB@ 58 45@LB@@LB@@LB@Energy -8.61 kcal/mol@LB@Hybridization Energy -14.2597 kcal/mol@LB@Unfolding Energy - mRNA 2.91134 kcal/mol@LB@Unfolding Energy - sRNA 2.7365 kcal/mol@LB@@LB@Position - mRNA 53 -- 64@LB@Position - sRNA 46 -- 57@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 50 -- 56@LB@ |
128 |
0.02532 |
0.6177 |
b3642 |
pyrE |
-8.06 |
0.101423 |
72 -- 92 |
43 -- 68 |
orotate phosphoribosyltransferase |
|
_____________71_________________________93\n_____________|__________________________|\n5'-CGG...CUUGU_G___C____________________CGAAU...AUU-3'\n______________U_GCU__UGGCCCG____AGGGGAAU\n______________|_|||__|||||||____||:|||||\n______________A_CGA__ACCGGGC____UCUCCUUA\n3'-UUU...GUUAU_G___UA_______AGUU________AAGUA...ACA-5'\n_____________|__________________________|\n_____________69_________________________42\n |
86 -- 92 |
43 -- 49 |
-26.5136 kcal/mol |
7.12642 kcal/mol |
11.3306 kcal/mol |
71 93@LB@ | |@LB@5'-CGG...CUUGU G C CGAAU...AUU-3'@LB@ U GCU UGGCCCG AGGGGAAU@LB@ | ||| ||||||| ||:|||||@LB@ A CGA ACCGGGC UCUCCUUA@LB@3'-UUU...GUUAU G UA AGUU AAGUA...ACA-5'@LB@ | |@LB@ 69 42@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -26.5136 kcal/mol@LB@Unfolding Energy - mRNA 7.12642 kcal/mol@LB@Unfolding Energy - sRNA 11.3306 kcal/mol@LB@@LB@Position - mRNA 72 -- 92@LB@Position - sRNA 43 -- 68@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 43 -- 49@LB@ |
129 |
0.02539 |
0.6177 |
b0129 |
yadI |
-10.21 |
0.037333 |
124 -- 136 |
40 -- 52 |
putative PTS Enzyme IIA |
|
_____________123___________137\n_____________|_____________|\n5'-CUG...UUGGG_____________GACGG...UGA-3'\n______________GGAGAGGAGUUUU\n______________::||||||:|||:\n______________UUUCUCCUUAAAG\n3'-UUU...GGCAG_____________UAAAA...ACA-5'\n_____________|_____________|\n_____________53____________39\n |
130 -- 136 |
40 -- 46 |
-14.8894 kcal/mol |
3.74683 kcal/mol |
0.936082 kcal/mol |
123 137@LB@ | |@LB@5'-CUG...UUGGG GACGG...UGA-3'@LB@ GGAGAGGAGUUUU@LB@ ::||||||:|||:@LB@ UUUCUCCUUAAAG@LB@3'-UUU...GGCAG UAAAA...ACA-5'@LB@ | |@LB@ 53 39@LB@@LB@@LB@Energy -10.21 kcal/mol@LB@Hybridization Energy -14.8894 kcal/mol@LB@Unfolding Energy - mRNA 3.74683 kcal/mol@LB@Unfolding Energy - sRNA 0.936082 kcal/mol@LB@@LB@Position - mRNA 124 -- 136@LB@Position - sRNA 40 -- 52@LB@Position Seed - mRNA 130 -- 136@LB@Position Seed - sRNA 40 -- 46@LB@ |
130 |
0.02541 |
0.6177 |
b4365 |
yjjQ |
-8.08 |
0.100207 |
263 -- 277 |
38 -- 55 |
putative transcriptional regulator |
|
_____________262_________________278\n_____________|___________________|\n5'-AGG...GCAGG___A_______________GAGGA...AUG-3'\n______________GUU_AAAGAGG____UCAU\n______________||:_|||||||____||||\n______________CAG_UUUCUCC____AGUA\n3'-UUU...CCGGG___________UUAA____AAAAA...ACA-5'\n_____________|___________________|\n_____________56__________________37\n |
267 -- 273 |
46 -- 52 |
-10.7142 kcal/mol |
1.46087 kcal/mol |
1.17036 kcal/mol |
262 278@LB@ | |@LB@5'-AGG...GCAGG A GAGGA...AUG-3'@LB@ GUU AAAGAGG UCAU@LB@ ||: ||||||| ||||@LB@ CAG UUUCUCC AGUA@LB@3'-UUU...CCGGG UUAA AAAAA...ACA-5'@LB@ | |@LB@ 56 37@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -10.7142 kcal/mol@LB@Unfolding Energy - mRNA 1.46087 kcal/mol@LB@Unfolding Energy - sRNA 1.17036 kcal/mol@LB@@LB@Position - mRNA 263 -- 277@LB@Position - sRNA 38 -- 55@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 46 -- 52@LB@ |