93 |
0.008233 |
0.2977 |
b2669 |
stpA |
-8.51 |
0.236304 |
244 -- 255 |
39 -- 50 |
DNA binding protein nucleoid-associated |
|
_____________243__________256\n_____________|____________|\n5'-UUC...CCUCC____________GCGAA...UCA-3'\n______________GUGCGAUGGCUC\n______________:|||:|||||:|\n______________UACGUUACCGGG\n3'-UUU...ACCGU____________UUGUC...UUG-5'\n_____________|____________|\n_____________51___________38\n |
249 -- 255 |
39 -- 45 |
-19.1222 kcal/mol |
5.86982 kcal/mol |
4.73799 kcal/mol |
243 256@LB@ | |@LB@5'-UUC...CCUCC GCGAA...UCA-3'@LB@ GUGCGAUGGCUC@LB@ :|||:|||||:|@LB@ UACGUUACCGGG@LB@3'-UUU...ACCGU UUGUC...UUG-5'@LB@ | |@LB@ 51 38@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -19.1222 kcal/mol@LB@Unfolding Energy - mRNA 5.86982 kcal/mol@LB@Unfolding Energy - sRNA 4.73799 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 39 -- 50@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 39 -- 45@LB@ |
102 |
0.009578 |
0.3118 |
b1247 |
oppF |
-10.09 |
0.116865 |
264 -- 290 |
39 -- 63 |
oligopeptide ABC transporter ATPase |
|
_____________263__________________________291\n_____________|____________________________|\n5'-GCG...ACUUU______AA__A______A__________UGGCA...CGC-3'\n______________GAAAUC__AG_UGGCAA__CAGUGGUUC\n______________:|||||__||_||||||__||:|||::|\n______________UUUUAG__UC_ACCGUU__GUUACCGGG\n3'-UUU...CAACC_________________AC_________UUGUC...UUG-5'\n_____________|____________________________|\n_____________64___________________________38\n |
284 -- 290 |
39 -- 45 |
-23.4236 kcal/mol |
6.69228 kcal/mol |
6.64584 kcal/mol |
263 291@LB@ | |@LB@5'-GCG...ACUUU AA A A UGGCA...CGC-3'@LB@ GAAAUC AG UGGCAA CAGUGGUUC@LB@ :||||| || |||||| ||:|||::|@LB@ UUUUAG UC ACCGUU GUUACCGGG@LB@3'-UUU...CAACC AC UUGUC...UUG-5'@LB@ | |@LB@ 64 38@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -23.4236 kcal/mol@LB@Unfolding Energy - mRNA 6.69228 kcal/mol@LB@Unfolding Energy - sRNA 6.64584 kcal/mol@LB@@LB@Position - mRNA 264 -- 290@LB@Position - sRNA 39 -- 63@LB@Position Seed - mRNA 284 -- 290@LB@Position Seed - sRNA 39 -- 45@LB@ |
60 |
0.004583 |
0.2539 |
b0674 |
asnB |
-9.07 |
0.186262 |
281 -- 298 |
39 -- 51 |
asparagine synthetase B |
|
_____________280________________299\n_____________|__________________|\n5'-ACA...CGCCU______UCAUC_______GG-3'\n______________GAUGCG_____GUGGCCC\n______________:||||:_____:||||||\n______________UUACGU_____UACCGGG\n3'-UUU...CACCG__________________UUGUC...UUG-5'\n_____________|__________________|\n_____________52_________________38\n |
292 -- 298 |
39 -- 45 |
-18.7239 kcal/mol |
4.90882 kcal/mol |
4.74571 kcal/mol |
280 299@LB@ | |@LB@5'-ACA...CGCCU UCAUC GG-3'@LB@ GAUGCG GUGGCCC@LB@ :||||: :||||||@LB@ UUACGU UACCGGG@LB@3'-UUU...CACCG UUGUC...UUG-5'@LB@ | |@LB@ 52 38@LB@@LB@@LB@Energy -9.07 kcal/mol@LB@Hybridization Energy -18.7239 kcal/mol@LB@Unfolding Energy - mRNA 4.90882 kcal/mol@LB@Unfolding Energy - sRNA 4.74571 kcal/mol@LB@@LB@Position - mRNA 281 -- 298@LB@Position - sRNA 39 -- 51@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 39 -- 45@LB@ |
9 |
0.0003848 |
0.1262 |
b2708 |
srlQ |
-10.45 |
0.097910 |
5 -- 28 |
40 -- 60 |
D-arabinose 5-phosphate isomerase |
|
_____________4_________________________29\n_____________|_________________________|\n_______5'-UACC______AA____AU___________GCGCG...GCG-3'\n______________GUCAGU__GGCA__GUGCAAUG_CC\n______________:|||||__||||__:|||||||_||\n______________UAGUCA__CCGU__UACGUUAC_GG\n3'-UUU...CCUUU______________________C__GUUGU...UUG-5'\n_____________|_________________________|\n_____________61________________________39\n |
20 -- 26 |
43 -- 49 |
-23.8159 kcal/mol |
7.25851 kcal/mol |
6.10522 kcal/mol |
4 29@LB@ | |@LB@ 5'-UACC AA AU GCGCG...GCG-3'@LB@ GUCAGU GGCA GUGCAAUG CC@LB@ :||||| |||| :||||||| ||@LB@ UAGUCA CCGU UACGUUAC GG@LB@3'-UUU...CCUUU C GUUGU...UUG-5'@LB@ | |@LB@ 61 39@LB@@LB@@LB@Energy -10.45 kcal/mol@LB@Hybridization Energy -23.8159 kcal/mol@LB@Unfolding Energy - mRNA 7.25851 kcal/mol@LB@Unfolding Energy - sRNA 6.10522 kcal/mol@LB@@LB@Position - mRNA 5 -- 28@LB@Position - sRNA 40 -- 60@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 43 -- 49@LB@ |
39 |
0.002581 |
0.2088 |
b3991 |
thiG |
-13.93 |
0.014953 |
9 -- 37 |
40 -- 69 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________8_______________________________38\n_____________|_______________________________|\n___5'-GCAGAUCC____UAAC_____A_____________C___GCCGG...CCG-3'\n______________UGUU____GAUCA___GCGAUGCAGUG_GCC\n______________||||____:||||___||:|||||:||_|||\n______________ACAA____UUAGU___CGUUACGUUAC_CGG\n3'-UUU...AAUAU____CCUU_____CAC_______________GUUGU...UUG-5'\n_____________|_______________________________|\n_____________70______________________________39\n |
27 -- 33 |
43 -- 49 |
-27.0914 kcal/mol |
6.322 kcal/mol |
6.83756 kcal/mol |
8 38@LB@ | |@LB@ 5'-GCAGAUCC UAAC A C GCCGG...CCG-3'@LB@ UGUU GAUCA GCGAUGCAGUG GCC@LB@ |||| :|||| ||:|||||:|| |||@LB@ ACAA UUAGU CGUUACGUUAC CGG@LB@3'-UUU...AAUAU CCUU CAC GUUGU...UUG-5'@LB@ | |@LB@ 70 39@LB@@LB@@LB@Energy -13.93 kcal/mol@LB@Hybridization Energy -27.0914 kcal/mol@LB@Unfolding Energy - mRNA 6.322 kcal/mol@LB@Unfolding Energy - sRNA 6.83756 kcal/mol@LB@@LB@Position - mRNA 9 -- 37@LB@Position - sRNA 40 -- 69@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 43 -- 49@LB@ |
73 |
0.006265 |
0.2822 |
b2452 |
eutH |
-10.44 |
0.098342 |
69 -- 89 |
40 -- 58 |
ethanolamine transporter |
|
_____________68____________________90\n_____________|_____________________|\n5'-UUG...UCCGC________CG_______U___GGAUG...UCC-3'\n______________CAGUGGCG__GUGCAAU_GCC\n______________|||||||:__:||||||_|||\n______________GUCACCGU__UACGUUA_CGG\n3'-UUU...UUUUA_________________C___GUUGU...UUG-5'\n_____________|_____________________|\n_____________59____________________39\n |
79 -- 85 |
44 -- 50 |
-25.8936 kcal/mol |
9.38235 kcal/mol |
6.06808 kcal/mol |
68 90@LB@ | |@LB@5'-UUG...UCCGC CG U GGAUG...UCC-3'@LB@ CAGUGGCG GUGCAAU GCC@LB@ |||||||: :|||||| |||@LB@ GUCACCGU UACGUUA CGG@LB@3'-UUU...UUUUA C GUUGU...UUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -25.8936 kcal/mol@LB@Unfolding Energy - mRNA 9.38235 kcal/mol@LB@Unfolding Energy - sRNA 6.06808 kcal/mol@LB@@LB@Position - mRNA 69 -- 89@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 44 -- 50@LB@ |
86 |
0.007534 |
0.2889 |
b0189 |
rof |
-5.95 |
0.582576 |
103 -- 121 |
40 -- 57 |
modulator of Rho-dependent transcription termination |
|
_____________102_________________122\n_____________|___________________|\n5'-AGG...UUGAA____CUG____A_______GCCGA...GCG-3'\n______________AGUG___AAUG_AAUGGCU\n______________||||___||||_||||||:\n______________UCAC___UUAC_UUACCGG\n3'-UUU...UUUAG____CG_____G_______GUUGU...UUG-5'\n_____________|___________________|\n_____________58__________________39\n |
115 -- 121 |
40 -- 46 |
-14.9441 kcal/mol |
3.94739 kcal/mol |
5.04912 kcal/mol |
102 122@LB@ | |@LB@5'-AGG...UUGAA CUG A GCCGA...GCG-3'@LB@ AGUG AAUG AAUGGCU@LB@ |||| |||| ||||||:@LB@ UCAC UUAC UUACCGG@LB@3'-UUU...UUUAG CG G GUUGU...UUG-5'@LB@ | |@LB@ 58 39@LB@@LB@@LB@Energy -5.95 kcal/mol@LB@Hybridization Energy -14.9441 kcal/mol@LB@Unfolding Energy - mRNA 3.94739 kcal/mol@LB@Unfolding Energy - sRNA 5.04912 kcal/mol@LB@@LB@Position - mRNA 103 -- 121@LB@Position - sRNA 40 -- 57@LB@Position Seed - mRNA 115 -- 121@LB@Position Seed - sRNA 40 -- 46@LB@ |
37 |
0.002433 |
0.2088 |
b2825 |
ppdB |
-7.88 |
0.305516 |
133 -- 146 |
40 -- 54 |
putative prepilin peptidase-dependent protein |
|
_____________132_____________147\n_____________|_______________|\n5'-CAU...CAACG_______________GGUGG...CGU-3'\n______________GGCGA_GUGGUGGCU\n______________|||:|_|:::||||:\n______________CCGUU_CGUUACCGG\n3'-UUU...AGUCA_____A_________GUUGU...UUG-5'\n_____________|_______________|\n_____________55______________39\n |
140 -- 146 |
40 -- 46 |
-19.4494 kcal/mol |
6.98652 kcal/mol |
4.58617 kcal/mol |
132 147@LB@ | |@LB@5'-CAU...CAACG GGUGG...CGU-3'@LB@ GGCGA GUGGUGGCU@LB@ |||:| |:::||||:@LB@ CCGUU CGUUACCGG@LB@3'-UUU...AGUCA A GUUGU...UUG-5'@LB@ | |@LB@ 55 39@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -19.4494 kcal/mol@LB@Unfolding Energy - mRNA 6.98652 kcal/mol@LB@Unfolding Energy - sRNA 4.58617 kcal/mol@LB@@LB@Position - mRNA 133 -- 146@LB@Position - sRNA 40 -- 54@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 40 -- 46@LB@ |
165 |
0.01953 |
0.3981 |
b0603 |
ybdO |
-12.89 |
0.027143 |
166 -- 206 |
40 -- 73 |
putative DNA-binding transcriptional regulator |
|
_____________165_________________________________________207\n_____________|___________________________________________|\n5'-UCA...GUGAA_____CA_______AAAAUAUAAC___A_______________AAUCU...CAC-3'\n______________UAUAU__UGGAAGA__________CGG__GUAGUGUA_UGGCC\n______________|||||__|||||:|__________|:|__|:|:||:|_|||||\n______________AUAUA__ACCUUUU__________GUC__CGUUACGU_ACCGG\n3'-UUU...GAAAA_____CA_______A____________AC________U_____GUUGU...UUG-5'\n_____________|___________________________________________|\n_____________74__________________________________________39\n |
195 -- 201 |
46 -- 52 |
-24.6879 kcal/mol |
4.92423 kcal/mol |
6.86861 kcal/mol |
165 207@LB@ | |@LB@5'-UCA...GUGAA CA AAAAUAUAAC A AAUCU...CAC-3'@LB@ UAUAU UGGAAGA CGG GUAGUGUA UGGCC@LB@ ||||| |||||:| |:| |:|:||:| |||||@LB@ AUAUA ACCUUUU GUC CGUUACGU ACCGG@LB@3'-UUU...GAAAA CA A AC U GUUGU...UUG-5'@LB@ | |@LB@ 74 39@LB@@LB@@LB@Energy -12.89 kcal/mol@LB@Hybridization Energy -24.6879 kcal/mol@LB@Unfolding Energy - mRNA 4.92423 kcal/mol@LB@Unfolding Energy - sRNA 6.86861 kcal/mol@LB@@LB@Position - mRNA 166 -- 206@LB@Position - sRNA 40 -- 73@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
146 |
0.01679 |
0.3828 |
b2699 |
recA |
-5.90 |
0.590167 |
190 -- 206 |
40 -- 58 |
DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
|
_____________189_________________207\n_____________|___________________|\n5'-UGC...CAUGA___GA____A_________AUCGA...ACC-3'\n______________CAG__GUAA___AAUGGCU\n______________|||__|:||___||||||:\n______________GUC__CGUU___UUACCGG\n3'-UUU...UUUUA___AC____ACG_______GUUGU...UUG-5'\n_____________|___________________|\n_____________59__________________39\n |
200 -- 206 |
40 -- 46 |
-15.424 kcal/mol |
3.45581 kcal/mol |
6.06808 kcal/mol |
189 207@LB@ | |@LB@5'-UGC...CAUGA GA A AUCGA...ACC-3'@LB@ CAG GUAA AAUGGCU@LB@ ||| |:|| ||||||:@LB@ GUC CGUU UUACCGG@LB@3'-UUU...UUUUA AC ACG GUUGU...UUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -15.424 kcal/mol@LB@Unfolding Energy - mRNA 3.45581 kcal/mol@LB@Unfolding Energy - sRNA 6.06808 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |