83 |
0.002775 |
0.1082 |
b2049 |
cpsB |
-6.85 |
0.497101 |
286 -- 298 |
17 -- 31 |
mannose-1-phosphate guanyltransferase |
|
_____________285_____________299\n_____________|_______________|\n5'-ACA...UCCCA_______________CC-3'\n______________AGC_AGU_UUUUAUG\n______________|||_||:_|||||||\n______________UCG_UCG_AAAAUAC\n3'-UUU...CCAUG___A___U_______CCAAU...UCG-5'\n_____________|_______________|\n_____________32______________16\n |
292 -- 298 |
17 -- 23 |
-8.99018 kcal/mol |
0.716641 kcal/mol |
1.4259 kcal/mol |
285 299@LB@ | |@LB@5'-ACA...UCCCA CC-3'@LB@ AGC AGU UUUUAUG@LB@ ||| ||: |||||||@LB@ UCG UCG AAAAUAC@LB@3'-UUU...CCAUG A U CCAAU...UCG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -6.85 kcal/mol@LB@Hybridization Energy -8.99018 kcal/mol@LB@Unfolding Energy - mRNA 0.716641 kcal/mol@LB@Unfolding Energy - sRNA 1.4259 kcal/mol@LB@@LB@Position - mRNA 286 -- 298@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 17 -- 23@LB@ |
72 |
0.001945 |
0.09081 |
b3024 |
ygiW |
-9.51 |
0.204072 |
108 -- 126 |
18 -- 35 |
hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein |
|
_____________107_________________127\n_____________|___________________|\n5'-UGA...GCUCU_______ACUAA_______UUUUU...AAA-3'\n______________GUACAGC_____AUUUUAU\n______________|||||||_____|||||||\n______________CAUGUCG_____UAAAAUA\n3'-UUU...AGGAC_______AUCG________CCCAA...UCG-5'\n_____________|___________________|\n_____________36__________________17\n |
120 -- 126 |
18 -- 24 |
-13.5355 kcal/mol |
2.57979 kcal/mol |
1.44471 kcal/mol |
107 127@LB@ | |@LB@5'-UGA...GCUCU ACUAA UUUUU...AAA-3'@LB@ GUACAGC AUUUUAU@LB@ ||||||| |||||||@LB@ CAUGUCG UAAAAUA@LB@3'-UUU...AGGAC AUCG CCCAA...UCG-5'@LB@ | |@LB@ 36 17@LB@@LB@@LB@Energy -9.51 kcal/mol@LB@Hybridization Energy -13.5355 kcal/mol@LB@Unfolding Energy - mRNA 2.57979 kcal/mol@LB@Unfolding Energy - sRNA 1.44471 kcal/mol@LB@@LB@Position - mRNA 108 -- 126@LB@Position - sRNA 18 -- 35@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 18 -- 24@LB@ |
79 |
0.002261 |
0.09621 |
b2556 |
glrK |
-15.72 |
0.006745 |
240 -- 258 |
20 -- 38 |
sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR |
|
_____________239_________________259\n_____________|___________________|\n5'-CUA...GACAA______AU___________UGCUG...CCU-3'\n______________CUGGUA__GCUGGCAUUUU\n______________||||||__|||:|||||||\n______________GACCAU__CGAUCGUAAAA\n3'-UUU...CCAAG______GU___________UACCC...UCG-5'\n_____________|___________________|\n_____________39__________________19\n |
252 -- 258 |
20 -- 26 |
-25.6316 kcal/mol |
5.4283 kcal/mol |
4.48821 kcal/mol |
239 259@LB@ | |@LB@5'-CUA...GACAA AU UGCUG...CCU-3'@LB@ CUGGUA GCUGGCAUUUU@LB@ |||||| |||:|||||||@LB@ GACCAU CGAUCGUAAAA@LB@3'-UUU...CCAAG GU UACCC...UCG-5'@LB@ | |@LB@ 39 19@LB@@LB@@LB@Energy -15.72 kcal/mol@LB@Hybridization Energy -25.6316 kcal/mol@LB@Unfolding Energy - mRNA 5.4283 kcal/mol@LB@Unfolding Energy - sRNA 4.48821 kcal/mol@LB@@LB@Position - mRNA 240 -- 258@LB@Position - sRNA 20 -- 38@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 20 -- 26@LB@ |
102 |
0.003761 |
0.123 |
b0928 |
aspC |
-10.71 |
0.122473 |
105 -- 118 |
20 -- 33 |
aspartate aminotransferase PLP-dependent |
|
_____________104____________119\n_____________|______________|\n5'-CGU...CAAAA_____CU_______CAUCA...UUG-3'\n______________ACAGC__GCGUUUU\n______________|||||__||:||||\n______________UGUCG__CGUAAAA\n3'-UUU...GACCA_____AU_______UACCC...UCG-5'\n_____________|______________|\n_____________34_____________19\n |
112 -- 118 |
20 -- 26 |
-14.5276 kcal/mol |
2.38321 kcal/mol |
1.43447 kcal/mol |
104 119@LB@ | |@LB@5'-CGU...CAAAA CU CAUCA...UUG-3'@LB@ ACAGC GCGUUUU@LB@ ||||| ||:||||@LB@ UGUCG CGUAAAA@LB@3'-UUU...GACCA AU UACCC...UCG-5'@LB@ | |@LB@ 34 19@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -14.5276 kcal/mol@LB@Unfolding Energy - mRNA 2.38321 kcal/mol@LB@Unfolding Energy - sRNA 1.43447 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 20 -- 33@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 20 -- 26@LB@ |
179 |
0.01003 |
0.1882 |
b0619 |
citA |
-9.15 |
0.235039 |
224 -- 237 |
20 -- 33 |
sensory histidine kinase in two-component regulatory system with CitB |
|
_____________223____________238\n_____________|______________|\n5'-CAU...AAUAA______U_______UCCAA...UCA-3'\n______________ACAGUU_GCAUUUU\n______________||||:|_|||||||\n______________UGUCGA_CGUAAAA\n3'-UUU...GACCA______U_______UACCC...UCG-5'\n_____________|______________|\n_____________34_____________19\n |
231 -- 237 |
20 -- 26 |
-13.7934 kcal/mol |
3.21006 kcal/mol |
1.43447 kcal/mol |
223 238@LB@ | |@LB@5'-CAU...AAUAA U UCCAA...UCA-3'@LB@ ACAGUU GCAUUUU@LB@ ||||:| |||||||@LB@ UGUCGA CGUAAAA@LB@3'-UUU...GACCA U UACCC...UCG-5'@LB@ | |@LB@ 34 19@LB@@LB@@LB@Energy -9.15 kcal/mol@LB@Hybridization Energy -13.7934 kcal/mol@LB@Unfolding Energy - mRNA 3.21006 kcal/mol@LB@Unfolding Energy - sRNA 1.43447 kcal/mol@LB@@LB@Position - mRNA 224 -- 237@LB@Position - sRNA 20 -- 33@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 20 -- 26@LB@ |
81 |
0.002689 |
0.1082 |
b1498 |
ydeN |
-15.88 |
0.005981 |
253 -- 275 |
21 -- 44 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________252______________________276\n_____________|________________________|\n5'-AUU...GAUAC___CA___________________GCUGC...UAA-3'\n______________UGG__UCUGGUAUGGCU_GCAUUU\n______________|||__:||||||::|||_||||||\n______________ACC__GGACCAUGUCGA_CGUAAA\n3'-UUU...CCUCC___AA____________U______AUACC...UCG-5'\n_____________|________________________|\n_____________45_______________________20\n |
263 -- 269 |
28 -- 34 |
-26.8614 kcal/mol |
6.42389 kcal/mol |
4.55918 kcal/mol |
252 276@LB@ | |@LB@5'-AUU...GAUAC CA GCUGC...UAA-3'@LB@ UGG UCUGGUAUGGCU GCAUUU@LB@ ||| :||||||::||| ||||||@LB@ ACC GGACCAUGUCGA CGUAAA@LB@3'-UUU...CCUCC AA U AUACC...UCG-5'@LB@ | |@LB@ 45 20@LB@@LB@@LB@Energy -15.88 kcal/mol@LB@Hybridization Energy -26.8614 kcal/mol@LB@Unfolding Energy - mRNA 6.42389 kcal/mol@LB@Unfolding Energy - sRNA 4.55918 kcal/mol@LB@@LB@Position - mRNA 253 -- 275@LB@Position - sRNA 21 -- 44@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 28 -- 34@LB@ |
107 |
0.004137 |
0.1296 |
b2164 |
psuT |
-12.74 |
0.044381 |
225 -- 254 |
21 -- 50 |
putative nucleoside transporter |
b2161 |
_____________224_______________________________255\n_____________|_________________________________|\n5'-CUG...UUGUG____U______GUUA________A_________CUGUU...GAG-3'\n______________GGGA_GGUGGU____CUGG__CA__UAGCAUUU\n______________:|||_||||||____||||__||__||||||||\n______________UCCU_CCACCA____GACC__GU__AUCGUAAA\n3'-UUU...CCGAU___________AG______AU__CG________AUACC...UCG-5'\n_____________|_________________________________|\n_____________51________________________________20\n |
248 -- 254 |
21 -- 27 |
-28.746 kcal/mol |
11.392 kcal/mol |
4.61445 kcal/mol |
224 255@LB@ | |@LB@5'-CUG...UUGUG U GUUA A CUGUU...GAG-3'@LB@ GGGA GGUGGU CUGG CA UAGCAUUU@LB@ :||| |||||| |||| || ||||||||@LB@ UCCU CCACCA GACC GU AUCGUAAA@LB@3'-UUU...CCGAU AG AU CG AUACC...UCG-5'@LB@ | |@LB@ 51 20@LB@@LB@@LB@Energy -12.74 kcal/mol@LB@Hybridization Energy -28.746 kcal/mol@LB@Unfolding Energy - mRNA 11.392 kcal/mol@LB@Unfolding Energy - sRNA 4.61445 kcal/mol@LB@@LB@Position - mRNA 225 -- 254@LB@Position - sRNA 21 -- 50@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 21 -- 27@LB@ |
120 |
0.005024 |
0.1407 |
b2564 |
pdxJ |
-10.23 |
0.151404 |
275 -- 296 |
21 -- 43 |
pyridoxine 5'-phosphate synthase |
|
_____________274_____________________297\n_____________|_______________________|\n5'-AAA...UACCC__A___________GCC______AUUG-3'\n______________GG_UCC_GGUGCAG___GCGUUU\n______________||_|||_|||:|||___||:|||\n______________CC_AGG_CCAUGUC___CGUAAA\n3'-UUU...CUCCA__A___A_______GAU______AUACC...UCG-5'\n_____________|_______________________|\n_____________44______________________20\n |
281 -- 287 |
30 -- 36 |
-24.4803 kcal/mol |
9.69131 kcal/mol |
4.55861 kcal/mol |
274 297@LB@ | |@LB@5'-AAA...UACCC A GCC AUUG-3'@LB@ GG UCC GGUGCAG GCGUUU@LB@ || ||| |||:||| ||:|||@LB@ CC AGG CCAUGUC CGUAAA@LB@3'-UUU...CUCCA A A GAU AUACC...UCG-5'@LB@ | |@LB@ 44 20@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -24.4803 kcal/mol@LB@Unfolding Energy - mRNA 9.69131 kcal/mol@LB@Unfolding Energy - sRNA 4.55861 kcal/mol@LB@@LB@Position - mRNA 275 -- 296@LB@Position - sRNA 21 -- 43@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 30 -- 36@LB@ |
118 |
0.00496 |
0.1407 |
b1128 |
roxA |
-15.27 |
0.009267 |
80 -- 105 |
22 -- 49 |
50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase |
|
_____________79___________________________106\n_____________|____________________________|\n5'-UGG...CGGAU_______A_____________C______CUGCG...ACC-3'\n______________GGAGGUG_UUUUUGGU_C_GC_AGCAUU\n______________|||||||_||::||||_|_||_||||||\n______________CCUCCAC_AAGGACCA_G_CG_UCGUAA\n3'-UUU...CGAUU_______C________U_U__A______AAUAC...UCG-5'\n_____________|____________________________|\n_____________50___________________________21\n |
80 -- 86 |
43 -- 49 |
-30.554 kcal/mol |
10.7239 kcal/mol |
4.55979 kcal/mol |
79 106@LB@ | |@LB@5'-UGG...CGGAU A C CUGCG...ACC-3'@LB@ GGAGGUG UUUUUGGU C GC AGCAUU@LB@ ||||||| ||::|||| | || ||||||@LB@ CCUCCAC AAGGACCA G CG UCGUAA@LB@3'-UUU...CGAUU C U U A AAUAC...UCG-5'@LB@ | |@LB@ 50 21@LB@@LB@@LB@Energy -15.27 kcal/mol@LB@Hybridization Energy -30.554 kcal/mol@LB@Unfolding Energy - mRNA 10.7239 kcal/mol@LB@Unfolding Energy - sRNA 4.55979 kcal/mol@LB@@LB@Position - mRNA 80 -- 105@LB@Position - sRNA 22 -- 49@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 43 -- 49@LB@ |
162 |
0.008285 |
0.1719 |
b3671 |
ilvB |
-15.19 |
0.009769 |
264 -- 284 |
22 -- 41 |
acetolactate synthase 2 large subunit |
|
_____________263___________________285\n_____________|_____________________|\n5'-CUA...UUCAU_______A_____AG______AAGAU...GCA-3'\n______________UUCCUGG_ACAGC__GGCAUU\n______________|||||||_|||||__:|||||\n______________AAGGACC_UGUCG__UCGUAA\n3'-UUU...CCACC_______A_____A_______AAUAC...UCG-5'\n_____________|_____________________|\n_____________42____________________21\n |
264 -- 270 |
35 -- 41 |
-26.898 kcal/mol |
7.14717 kcal/mol |
4.5564 kcal/mol |
263 285@LB@ | |@LB@5'-CUA...UUCAU A AG AAGAU...GCA-3'@LB@ UUCCUGG ACAGC GGCAUU@LB@ ||||||| ||||| :|||||@LB@ AAGGACC UGUCG UCGUAA@LB@3'-UUU...CCACC A A AAUAC...UCG-5'@LB@ | |@LB@ 42 21@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -26.898 kcal/mol@LB@Unfolding Energy - mRNA 7.14717 kcal/mol@LB@Unfolding Energy - sRNA 4.5564 kcal/mol@LB@@LB@Position - mRNA 264 -- 284@LB@Position - sRNA 22 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 35 -- 41@LB@ |