| 2 |
0.0001834 |
0.3 |
b2729 |
hypD |
-13.53 |
0.025234 |
75 -- 91 |
71 -- 87 |
hydrogenase maturation protein |
|
_____________74________________92\n_____________|_________________|\n5'-CAG...GUACU___A_____________CCAUG...GCC-3'\n______________GGU_CACGUUGGCUUUG\n______________:||_||||||||||||:\n______________UCA_GUGCAACCGAAAU\n3'-CGC...CGUUU___A_____________CAAUA...AAG-5'\n_____________|_________________|\n_____________88________________70\n |
85 -- 91 |
71 -- 77 |
-22.1935 kcal/mol |
8.09841 kcal/mol |
0.562376 kcal/mol |
74 92@LB@ | |@LB@5'-CAG...GUACU A CCAUG...GCC-3'@LB@ GGU CACGUUGGCUUUG@LB@ :|| ||||||||||||:@LB@ UCA GUGCAACCGAAAU@LB@3'-CGC...CGUUU A CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.1935 kcal/mol@LB@Unfolding Energy - mRNA 8.09841 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 75 -- 91@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 64 |
0.01278 |
0.5385 |
b1718 |
infC |
-10.82 |
0.076139 |
1 -- 9 |
71 -- 79 |
translation initiation factor IF-3 |
|
______________1________10\n______________|________|\n___________5'-_________AAAUC...AGC-3'\n______________UUGGCUUUA\n______________|||||||||\n______________AACCGAAAU\n3'-CGC...AGUGC_________CAAUA...AAG-5'\n_____________|_________|\n_____________80________70\n |
3 -- 9 |
71 -- 77 |
-11.2516 kcal/mol |
0.206511 kcal/mol |
0.222833 kcal/mol |
1 10@LB@ | |@LB@ 5'- AAAUC...AGC-3'@LB@ UUGGCUUUA@LB@ |||||||||@LB@ AACCGAAAU@LB@3'-CGC...AGUGC CAAUA...AAG-5'@LB@ | |@LB@ 80 70@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -11.2516 kcal/mol@LB@Unfolding Energy - mRNA 0.206511 kcal/mol@LB@Unfolding Energy - sRNA 0.222833 kcal/mol@LB@@LB@Position - mRNA 1 -- 9@LB@Position - sRNA 71 -- 79@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 69 |
0.01301 |
0.5385 |
b0174 |
ispU |
-11.35 |
0.061456 |
97 -- 106 |
71 -- 80 |
undecaprenyl pyrophosphate synthase |
|
_____________96_________107\n_____________|__________|\n5'-CGU...AAGUA__________UAAGG...AAA-3'\n______________GUUGGCUUUA\n______________||||||||||\n______________CAACCGAAAU\n3'-CGC...AAGUG__________CAAUA...AAG-5'\n_____________|__________|\n_____________81_________70\n |
100 -- 106 |
71 -- 77 |
-14.3232 kcal/mol |
2.73321 kcal/mol |
0.236872 kcal/mol |
96 107@LB@ | |@LB@5'-CGU...AAGUA UAAGG...AAA-3'@LB@ GUUGGCUUUA@LB@ ||||||||||@LB@ CAACCGAAAU@LB@3'-CGC...AAGUG CAAUA...AAG-5'@LB@ | |@LB@ 81 70@LB@@LB@@LB@Energy -11.35 kcal/mol@LB@Hybridization Energy -14.3232 kcal/mol@LB@Unfolding Energy - mRNA 2.73321 kcal/mol@LB@Unfolding Energy - sRNA 0.236872 kcal/mol@LB@@LB@Position - mRNA 97 -- 106@LB@Position - sRNA 71 -- 80@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 145 |
0.02443 |
0.5467 |
b2569 |
lepA |
-12.53 |
0.038132 |
5 -- 17 |
71 -- 85 |
back-translocating elongation factor EF4 GTPase |
|
_____________4_______________18\n_____________|_______________|\n_______5'-UGAU_______________UUGCA...ACC-3'\n______________UUCAC__UGGCUUUG\n______________|||||__|||||||:\n______________AAGUG__ACCGAAAU\n3'-CGC...UUUUC_____CA________CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
11 -- 17 |
71 -- 77 |
-14.3569 kcal/mol |
1.27074 kcal/mol |
0.560731 kcal/mol |
4 18@LB@ | |@LB@ 5'-UGAU UUGCA...ACC-3'@LB@ UUCAC UGGCUUUG@LB@ ||||| |||||||:@LB@ AAGUG ACCGAAAU@LB@3'-CGC...UUUUC CA CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -12.53 kcal/mol@LB@Hybridization Energy -14.3569 kcal/mol@LB@Unfolding Energy - mRNA 1.27074 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 5 -- 17@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 164 |
0.02889 |
0.5559 |
b1512 |
lsrR |
-7.59 |
0.264791 |
265 -- 277 |
71 -- 84 |
lsr operon transcriptional repressor |
|
_____________264____________278\n_____________|______________|\n5'-GCU...GCGGA______________CUAUC...AGA-3'\n______________UCGCG_UGGUUUUA\n______________||:||_|||:||||\n______________AGUGC_ACCGAAAU\n3'-CGC...UUUCA_____A________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
271 -- 277 |
71 -- 77 |
-14.8882 kcal/mol |
6.73904 kcal/mol |
0.5567 kcal/mol |
264 278@LB@ | |@LB@5'-GCU...GCGGA CUAUC...AGA-3'@LB@ UCGCG UGGUUUUA@LB@ ||:|| |||:||||@LB@ AGUGC ACCGAAAU@LB@3'-CGC...UUUCA A CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -7.59 kcal/mol@LB@Hybridization Energy -14.8882 kcal/mol@LB@Unfolding Energy - mRNA 6.73904 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 265 -- 277@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 124 |
0.02124 |
0.5385 |
b0198 |
metI |
-9.85 |
0.112177 |
270 -- 285 |
71 -- 87 |
DL-methionine transporter subunit |
|
_____________269_______________286\n_____________|_________________|\n5'-UCA...UAUCC_____UU__________UGAUU...CGG-3'\n______________GGUUU___UUGGCUUUG\n______________:|||:___||||||||:\n______________UCAAG___AACCGAAAU\n3'-CGC...CGUUU_____UGC_________CAAUA...AAG-5'\n_____________|_________________|\n_____________88________________70\n |
279 -- 285 |
71 -- 77 |
-13.0228 kcal/mol |
2.60961 kcal/mol |
0.562376 kcal/mol |
269 286@LB@ | |@LB@5'-UCA...UAUCC UU UGAUU...CGG-3'@LB@ GGUUU UUGGCUUUG@LB@ :|||: ||||||||:@LB@ UCAAG AACCGAAAU@LB@3'-CGC...CGUUU UGC CAAUA...AAG-5'@LB@ | |@LB@ 88 70@LB@@LB@@LB@Energy -9.85 kcal/mol@LB@Hybridization Energy -13.0228 kcal/mol@LB@Unfolding Energy - mRNA 2.60961 kcal/mol@LB@Unfolding Energy - sRNA 0.562376 kcal/mol@LB@@LB@Position - mRNA 270 -- 285@LB@Position - sRNA 71 -- 87@LB@Position Seed - mRNA 279 -- 285@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 31 |
0.005384 |
0.5385 |
b0159 |
mtn |
-14.65 |
0.015942 |
9 -- 52 |
71 -- 108 |
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase |
|
_____________8____________________________________________53\n_____________|____________________________________________|\n___5'-GAUACGCC__C____G__CUC_A____________UC_______C_______ACGCC...UCU-3'\n______________CG_GAUC_CU___G_AGAUCCGCAGGA__UCAUGUU_GGUUUUA\n______________||_||||_||___|_|||||||||::|__|||:|||_||:||||\n______________GC_CUAG_GA___C_UCUAGGCGUUUU__AGUGCAA_CCGAAAU\n__________3'-C__________C________________CA_______________CAAUA...AAG-5'\n_____________|____________________________________________|\n_____________109__________________________________________70\n |
46 -- 52 |
71 -- 77 |
-39.2779 kcal/mol |
12.7007 kcal/mol |
11.9275 kcal/mol |
8 53@LB@ | |@LB@ 5'-GAUACGCC C G CUC A UC C ACGCC...UCU-3'@LB@ CG GAUC CU G AGAUCCGCAGGA UCAUGUU GGUUUUA@LB@ || |||| || | |||||||||::| |||:||| ||:||||@LB@ GC CUAG GA C UCUAGGCGUUUU AGUGCAA CCGAAAU@LB@ 3'-C C CA CAAUA...AAG-5'@LB@ | |@LB@ 109 70@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -39.2779 kcal/mol@LB@Unfolding Energy - mRNA 12.7007 kcal/mol@LB@Unfolding Energy - sRNA 11.9275 kcal/mol@LB@@LB@Position - mRNA 9 -- 52@LB@Position - sRNA 71 -- 108@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 95 |
0.01635 |
0.5385 |
b2287 |
nuoB |
-8.27 |
0.206762 |
33 -- 42 |
71 -- 80 |
NADH:ubiquinone oxidoreductase chain B |
|
_____________32_________43\n_____________|__________|\n5'-CAU...GCUGG__A_______UGGAA...UUA-3'\n______________GU_GGCUUUG\n______________||_||||||:\n______________CA_CCGAAAU\n3'-CGC...AAGUG__A_______CAAUA...AAG-5'\n_____________|__________|\n_____________81_________70\n |
36 -- 42 |
71 -- 77 |
-10.0496 kcal/mol |
1.54713 kcal/mol |
0.236872 kcal/mol |
32 43@LB@ | |@LB@5'-CAU...GCUGG A UGGAA...UUA-3'@LB@ GU GGCUUUG@LB@ || ||||||:@LB@ CA CCGAAAU@LB@3'-CGC...AAGUG A CAAUA...AAG-5'@LB@ | |@LB@ 81 70@LB@@LB@@LB@Energy -8.27 kcal/mol@LB@Hybridization Energy -10.0496 kcal/mol@LB@Unfolding Energy - mRNA 1.54713 kcal/mol@LB@Unfolding Energy - sRNA 0.236872 kcal/mol@LB@@LB@Position - mRNA 33 -- 42@LB@Position - sRNA 71 -- 80@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 76 |
0.01392 |
0.5385 |
b0066 |
thiQ |
-9.74 |
0.117374 |
220 -- 232 |
71 -- 84 |
thiamine/thiamine pyrophosphate ABC transporter ATPase |
|
_____________219____________233\n_____________|______________|\n5'-GCU...UGAUA____C_________CCACC...CAA-3'\n______________UCAC__UGGCUUUA\n______________||||__||||||||\n______________AGUG__ACCGAAAU\n3'-CGC...UUUCA____CA________CAAUA...AAG-5'\n_____________|______________|\n_____________85_____________70\n |
226 -- 232 |
71 -- 77 |
-13.9563 kcal/mol |
3.66363 kcal/mol |
0.5567 kcal/mol |
219 233@LB@ | |@LB@5'-GCU...UGAUA C CCACC...CAA-3'@LB@ UCAC UGGCUUUA@LB@ |||| ||||||||@LB@ AGUG ACCGAAAU@LB@3'-CGC...UUUCA CA CAAUA...AAG-5'@LB@ | |@LB@ 85 70@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -13.9563 kcal/mol@LB@Unfolding Energy - mRNA 3.66363 kcal/mol@LB@Unfolding Energy - sRNA 0.5567 kcal/mol@LB@@LB@Position - mRNA 220 -- 232@LB@Position - sRNA 71 -- 84@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 179 |
0.03159 |
0.5559 |
b0790 |
ybhP |
-12.03 |
0.046743 |
250 -- 264 |
71 -- 85 |
endo/exonuclease/phosphatase family protein |
|
_____________249_____________265\n_____________|_______________|\n5'-AGU...CAAUA_____AAA_______CCGCG...UUC-3'\n______________UUCAC___GGCUUUA\n______________|||||___|||||||\n______________AAGUG___CCGAAAU\n3'-CGC...UUUUC_____CAA_______CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
258 -- 264 |
71 -- 77 |
-13.6298 kcal/mol |
1.04243 kcal/mol |
0.560731 kcal/mol |
249 265@LB@ | |@LB@5'-AGU...CAAUA AAA CCGCG...UUC-3'@LB@ UUCAC GGCUUUA@LB@ ||||| |||||||@LB@ AAGUG CCGAAAU@LB@3'-CGC...UUUUC CAA CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -13.6298 kcal/mol@LB@Unfolding Energy - mRNA 1.04243 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 250 -- 264@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 71 -- 77@LB@ |
