160 |
0.0322 |
0.6177 |
b1550 |
gnsB |
-8.75 |
0.073686 |
189 -- 197 |
44 -- 52 |
Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) |
b4517 |
_____________188_______198\n_____________|_________|\n5'-UGG...GACUA_________AUGAU...UUA-3'\n______________AAAGAGGAA\n______________|||||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
191 -- 197 |
44 -- 50 |
-11.5466 kcal/mol |
1.93458 kcal/mol |
0.860683 kcal/mol |
188 198@LB@ | |@LB@5'-UGG...GACUA AUGAU...UUA-3'@LB@ AAAGAGGAA@LB@ |||||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -11.5466 kcal/mol@LB@Unfolding Energy - mRNA 1.93458 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 44 -- 50@LB@ |
163 |
0.03345 |
0.6177 |
b1235 |
rssB |
-5.20 |
0.346272 |
186 -- 195 |
44 -- 55 |
PcnB-degradosome interaction factor; response regulator |
|
_____________185__________196\n_____________|____________|\n5'-AAU...AGCCA____________AGAAC...CAA-3'\n______________GUC__AGGGGAG\n______________|||__||:|||:\n______________CAG__UCUCCUU\n3'-UUU...CCGGG___UU_______AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
189 -- 195 |
44 -- 50 |
-10.1709 kcal/mol |
4.02871 kcal/mol |
0.941432 kcal/mol |
185 196@LB@ | |@LB@5'-AAU...AGCCA AGAAC...CAA-3'@LB@ GUC AGGGGAG@LB@ ||| ||:|||:@LB@ CAG UCUCCUU@LB@3'-UUU...CCGGG UU AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -5.20 kcal/mol@LB@Hybridization Energy -10.1709 kcal/mol@LB@Unfolding Energy - mRNA 4.02871 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
166 |
0.03384 |
0.6177 |
b4035 |
malK |
-4.35 |
0.473183 |
186 -- 196 |
44 -- 53 |
maltose ABC transportor ATPase |
|
_____________185_________197\n_____________|___________|\n5'-CGC...UGUUA_______A___GGGCA...UGU-3'\n______________CAAAGGG_GAA\n______________|||||:|_|||\n______________GUUUCUC_CUU\n3'-UUU...GGGCA___________AAAGU...ACA-5'\n_____________|___________|\n_____________54__________43\n |
186 -- 192 |
47 -- 53 |
-9.12531 kcal/mol |
3.84302 kcal/mol |
0.927997 kcal/mol |
185 197@LB@ | |@LB@5'-CGC...UGUUA A GGGCA...UGU-3'@LB@ CAAAGGG GAA@LB@ |||||:| |||@LB@ GUUUCUC CUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -4.35 kcal/mol@LB@Hybridization Energy -9.12531 kcal/mol@LB@Unfolding Energy - mRNA 3.84302 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 186 -- 196@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 47 -- 53@LB@ |
167 |
0.03387 |
0.6177 |
b3980 |
tufB |
-7.70 |
0.119070 |
183 -- 194 |
44 -- 55 |
translation elongation factor EF-Tu 2 |
b3339 |
_____________182__________195\n_____________|____________|\n5'-UCC...UCCGU___UU_______CAAUC...CUA-3'\n______________GUC__AGAGGGA\n______________|||__|||||:|\n______________CAG__UCUCCUU\n3'-UUU...CCGGG___UU_______AAAGU...ACA-5'\n_____________|____________|\n_____________56___________43\n |
188 -- 194 |
44 -- 50 |
-14.3886 kcal/mol |
5.74361 kcal/mol |
0.941432 kcal/mol |
182 195@LB@ | |@LB@5'-UCC...UCCGU UU CAAUC...CUA-3'@LB@ GUC AGAGGGA@LB@ ||| |||||:|@LB@ CAG UCUCCUU@LB@3'-UUU...CCGGG UU AAAGU...ACA-5'@LB@ | |@LB@ 56 43@LB@@LB@@LB@Energy -7.70 kcal/mol@LB@Hybridization Energy -14.3886 kcal/mol@LB@Unfolding Energy - mRNA 5.74361 kcal/mol@LB@Unfolding Energy - sRNA 0.941432 kcal/mol@LB@@LB@Position - mRNA 183 -- 194@LB@Position - sRNA 44 -- 55@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
168 |
0.03398 |
0.6177 |
b0321 |
yahG |
-8.56 |
0.080369 |
183 -- 192 |
44 -- 53 |
DUF1116 family protein |
b4572 |
_____________182________193\n_____________|__________|\n5'-AUC...AUCUG__________GAAGC...AAC-3'\n______________CAAAGGGGAG\n______________|||||:|||:\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
186 -- 192 |
44 -- 50 |
-12.9704 kcal/mol |
3.47901 kcal/mol |
0.927997 kcal/mol |
182 193@LB@ | |@LB@5'-AUC...AUCUG GAAGC...AAC-3'@LB@ CAAAGGGGAG@LB@ |||||:|||:@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -8.56 kcal/mol@LB@Hybridization Energy -12.9704 kcal/mol@LB@Unfolding Energy - mRNA 3.47901 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 183 -- 192@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 44 -- 50@LB@ |
177 |
0.03616 |
0.6177 |
b1474 |
fdnG |
-8.74 |
0.074199 |
188 -- 196 |
44 -- 52 |
formate dehydrogenase-N alpha subunit nitrate-inducible |
b3894 |
_____________187_______197\n_____________|_________|\n5'-AUU...UGAAA_________AGCAA...CUC-3'\n______________AAAGAGGAA\n______________|||||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
190 -- 196 |
44 -- 50 |
-11.3772 kcal/mol |
1.78024 kcal/mol |
0.860683 kcal/mol |
187 197@LB@ | |@LB@5'-AUU...UGAAA AGCAA...CUC-3'@LB@ AAAGAGGAA@LB@ |||||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -11.3772 kcal/mol@LB@Unfolding Energy - mRNA 1.78024 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 188 -- 196@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |
178 |
0.03627 |
0.6177 |
b0924 |
mukB |
-9.59 |
0.049840 |
186 -- 195 |
44 -- 53 |
chromosome condensin MukBEF ATPase and DNA-binding subunit |
|
_____________185________196\n_____________|__________|\n5'-UGG...GAUAG__________GAAUA...CUG-3'\n______________CGGAGAGGAA\n______________|::|||||||\n______________GUUUCUCCUU\n3'-UUU...GGGCA__________AAAGU...ACA-5'\n_____________|__________|\n_____________54_________43\n |
189 -- 195 |
44 -- 50 |
-13.8471 kcal/mol |
3.32824 kcal/mol |
0.927997 kcal/mol |
185 196@LB@ | |@LB@5'-UGG...GAUAG GAAUA...CUG-3'@LB@ CGGAGAGGAA@LB@ |::|||||||@LB@ GUUUCUCCUU@LB@3'-UUU...GGGCA AAAGU...ACA-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.8471 kcal/mol@LB@Unfolding Energy - mRNA 3.32824 kcal/mol@LB@Unfolding Energy - sRNA 0.927997 kcal/mol@LB@@LB@Position - mRNA 186 -- 195@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 44 -- 50@LB@ |
188 |
0.03926 |
0.6177 |
b4547 |
ypfN |
-8.44 |
0.084930 |
187 -- 194 |
44 -- 51 |
putative membrane protein UPF0370 family |
|
_____________186______195\n_____________|________|\n5'-UGA...UCUGC________AUAAG...AGA-3'\n______________AAGAGGAA\n______________||||||||\n______________UUCUCCUU\n3'-UUU...GCAGU________AAAGU...ACA-5'\n_____________|________|\n_____________52_______43\n |
188 -- 194 |
44 -- 50 |
-10.245 kcal/mol |
0.953219 kcal/mol |
0.848077 kcal/mol |
186 195@LB@ | |@LB@5'-UGA...UCUGC AUAAG...AGA-3'@LB@ AAGAGGAA@LB@ ||||||||@LB@ UUCUCCUU@LB@3'-UUU...GCAGU AAAGU...ACA-5'@LB@ | |@LB@ 52 43@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -10.245 kcal/mol@LB@Unfolding Energy - mRNA 0.953219 kcal/mol@LB@Unfolding Energy - sRNA 0.848077 kcal/mol@LB@@LB@Position - mRNA 187 -- 194@LB@Position - sRNA 44 -- 51@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 44 -- 50@LB@ |
189 |
0.03933 |
0.6177 |
b2461 |
eutP |
-9.78 |
0.045635 |
227 -- 240 |
44 -- 56 |
putative P-loop NTPase ethanolamine utilization protein |
|
_____________226____________241\n_____________|______________|\n5'-AAA...GGUAG________C_____AAACA...CCG-3'\n______________CGUCGGGG_AGGAA\n______________||||:::|_|||||\n______________GCAGUUUC_UCCUU\n3'-UUU...ACCGG______________AAAGU...ACA-5'\n_____________|______________|\n_____________57_____________43\n |
228 -- 234 |
49 -- 55 |
-15.0697 kcal/mol |
4.34178 kcal/mol |
0.948902 kcal/mol |
226 241@LB@ | |@LB@5'-AAA...GGUAG C AAACA...CCG-3'@LB@ CGUCGGGG AGGAA@LB@ ||||:::| |||||@LB@ GCAGUUUC UCCUU@LB@3'-UUU...ACCGG AAAGU...ACA-5'@LB@ | |@LB@ 57 43@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -15.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.34178 kcal/mol@LB@Unfolding Energy - sRNA 0.948902 kcal/mol@LB@@LB@Position - mRNA 227 -- 240@LB@Position - sRNA 44 -- 56@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 49 -- 55@LB@ |
192 |
0.04008 |
0.6177 |
b2822 |
recC |
-5.02 |
0.370915 |
179 -- 195 |
44 -- 57 |
exonuclease V (RecBCD complex) gamma chain |
|
_____________178_______________196\n_____________|_________________|\n5'-AGU...CCGAA_______U__UC_____CCGCU...AGA-3'\n______________UCGUCAG_AG__AGGAG\n______________:|||||:_||__||||:\n______________GGCAGUU_UC__UCCUU\n3'-UUU...AACCG_________________AAAGU...ACA-5'\n_____________|_________________|\n_____________58________________43\n |
179 -- 185 |
51 -- 57 |
-11.1502 kcal/mol |
3.39036 kcal/mol |
2.73756 kcal/mol |
178 196@LB@ | |@LB@5'-AGU...CCGAA U UC CCGCU...AGA-3'@LB@ UCGUCAG AG AGGAG@LB@ :|||||: || ||||:@LB@ GGCAGUU UC UCCUU@LB@3'-UUU...AACCG AAAGU...ACA-5'@LB@ | |@LB@ 58 43@LB@@LB@@LB@Energy -5.02 kcal/mol@LB@Hybridization Energy -11.1502 kcal/mol@LB@Unfolding Energy - mRNA 3.39036 kcal/mol@LB@Unfolding Energy - sRNA 2.73756 kcal/mol@LB@@LB@Position - mRNA 179 -- 195@LB@Position - sRNA 44 -- 57@LB@Position Seed - mRNA 179 -- 185@LB@Position Seed - sRNA 51 -- 57@LB@ |