121 |
0.01057 |
0.2813 |
b0452 |
tesB |
-8.75 |
0.037433 |
210 -- 223 |
26 -- 40 |
acyl-CoA thioesterase 2 |
|
_____________209_____________224\n_____________|_______________|\n5'-CAA...GUCAG_______________ACUGA...AGG-3'\n______________GCGC_UAAAAAAUUU\n______________||:|_|||||||||:\n______________CGUG_AUUUUUUAAG\n3'-UUU...UUCUU____A__________CAAUG...CAA-5'\n_____________|_______________|\n_____________41______________25\n |
217 -- 223 |
26 -- 32 |
-10.9054 kcal/mol |
0.50684 kcal/mol |
1.64811 kcal/mol |
209 224@LB@ | |@LB@5'-CAA...GUCAG ACUGA...AGG-3'@LB@ GCGC UAAAAAAUUU@LB@ ||:| |||||||||:@LB@ CGUG AUUUUUUAAG@LB@3'-UUU...UUCUU A CAAUG...CAA-5'@LB@ | |@LB@ 41 25@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -10.9054 kcal/mol@LB@Unfolding Energy - mRNA 0.50684 kcal/mol@LB@Unfolding Energy - sRNA 1.64811 kcal/mol@LB@@LB@Position - mRNA 210 -- 223@LB@Position - sRNA 26 -- 40@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 26 -- 32@LB@ |
122 |
0.01076 |
0.2828 |
b1908 |
yecA |
-7.65 |
0.074805 |
79 -- 96 |
18 -- 40 |
UPF0149 family protein |
|
_____________78_______________________97\n_____________|________________________|\n5'-UAC...UGCCU__A_____________________CUCCU...UGG-3'\n______________GC_ACUUG______UCGUUACACC\n______________||_||||:______||||||||||\n______________CG_UGAAU______AGCAAUGUGG\n3'-UUU...UUCUU________UUUUUA__________UCCUU...CAA-5'\n_____________|________________________|\n_____________41_______________________17\n |
90 -- 96 |
18 -- 24 |
-19.1188 kcal/mol |
2.30438 kcal/mol |
9.1639 kcal/mol |
78 97@LB@ | |@LB@5'-UAC...UGCCU A CUCCU...UGG-3'@LB@ GC ACUUG UCGUUACACC@LB@ || ||||: ||||||||||@LB@ CG UGAAU AGCAAUGUGG@LB@3'-UUU...UUCUU UUUUUA UCCUU...CAA-5'@LB@ | |@LB@ 41 17@LB@@LB@@LB@Energy -7.65 kcal/mol@LB@Hybridization Energy -19.1188 kcal/mol@LB@Unfolding Energy - mRNA 2.30438 kcal/mol@LB@Unfolding Energy - sRNA 9.1639 kcal/mol@LB@@LB@Position - mRNA 79 -- 96@LB@Position - sRNA 18 -- 40@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 18 -- 24@LB@ |
123 |
0.0108 |
0.2828 |
b2606 |
rplS |
-6.81 |
0.122900 |
220 -- 252 |
37 -- 58 |
50S ribosomal subunit protein L19 |
|
_____________219_______________________________253\n_____________|_________________________________|\n5'-AUA...UAAGC______AACAAGAGCAGAUG________C____CUUCC...UUG-3'\n______________AACUUG______________AAGCAGGA_GUAC\n______________||||||______________|||||:||_|:||\n______________UUGAAC______________UUCGUUCU_CGUG\n3'-UUU...CUACU______GAA___________________U____AAUUU...CAA-5'\n_____________|_________________________________|\n_____________59________________________________36\n |
241 -- 247 |
42 -- 48 |
-17.5998 kcal/mol |
4.54246 kcal/mol |
6.24354 kcal/mol |
219 253@LB@ | |@LB@5'-AUA...UAAGC AACAAGAGCAGAUG C CUUCC...UUG-3'@LB@ AACUUG AAGCAGGA GUAC@LB@ |||||| |||||:|| |:||@LB@ UUGAAC UUCGUUCU CGUG@LB@3'-UUU...CUACU GAA U AAUUU...CAA-5'@LB@ | |@LB@ 59 36@LB@@LB@@LB@Energy -6.81 kcal/mol@LB@Hybridization Energy -17.5998 kcal/mol@LB@Unfolding Energy - mRNA 4.54246 kcal/mol@LB@Unfolding Energy - sRNA 6.24354 kcal/mol@LB@@LB@Position - mRNA 220 -- 252@LB@Position - sRNA 37 -- 58@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 42 -- 48@LB@ |
124 |
0.01089 |
0.2829 |
b0186 |
ldcC |
-10.51 |
0.011388 |
34 -- 66 |
24 -- 58 |
lysine decarboxylase 2 constitutive |
|
_____________33___________________________________67\n_____________|____________________________________|\n5'-AAA...AUCUC___G__________CU____________________CGUUA...UUA-3'\n______________GAC_UG_UUAAGCA__GAAG_AUUUAAAAAA_UCGU\n______________:||_||_|||||||__||||_|:||||||||_||||\n______________UUG_AC_AAUUCGU__CUUC_UGAAUUUUUU_AGCA\n3'-UUU...CUACU___A__G_______U_____G__________A____AUGUG...CAA-5'\n_____________|____________________________________|\n_____________59___________________________________23\n |
53 -- 59 |
32 -- 38 |
-24.2219 kcal/mol |
7.43557 kcal/mol |
6.27608 kcal/mol |
33 67@LB@ | |@LB@5'-AAA...AUCUC G CU CGUUA...UUA-3'@LB@ GAC UG UUAAGCA GAAG AUUUAAAAAA UCGU@LB@ :|| || ||||||| |||| |:|||||||| ||||@LB@ UUG AC AAUUCGU CUUC UGAAUUUUUU AGCA@LB@3'-UUU...CUACU A G U G A AUGUG...CAA-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -24.2219 kcal/mol@LB@Unfolding Energy - mRNA 7.43557 kcal/mol@LB@Unfolding Energy - sRNA 6.27608 kcal/mol@LB@@LB@Position - mRNA 34 -- 66@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 32 -- 38@LB@ |
125 |
0.01132 |
0.2916 |
b4152 |
frdC |
-8.74 |
0.037729 |
137 -- 154 |
25 -- 41 |
fumarate reductase (anaerobic) membrane anchor subunit |
|
_____________136________________155\n_____________|__________________|\n5'-AGA...AGCAG____AAG___________AAAGA...CGG-3'\n______________GGCA___UAGAAAGUUCG\n______________:|||___||:|||:||||\n______________UCGU___AUUUUUUAAGC\n3'-UUU...GUUCU____GA____________AAUGU...CAA-5'\n_____________|__________________|\n_____________42_________________24\n |
148 -- 154 |
25 -- 31 |
-13.3883 kcal/mol |
3.00162 kcal/mol |
1.64839 kcal/mol |
136 155@LB@ | |@LB@5'-AGA...AGCAG AAG AAAGA...CGG-3'@LB@ GGCA UAGAAAGUUCG@LB@ :||| ||:|||:||||@LB@ UCGU AUUUUUUAAGC@LB@3'-UUU...GUUCU GA AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -13.3883 kcal/mol@LB@Unfolding Energy - mRNA 3.00162 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 137 -- 154@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 25 -- 31@LB@ |
126 |
0.01159 |
0.2964 |
b3693 |
dgoK |
-8.44 |
0.045823 |
138 -- 160 |
34 -- 54 |
2-oxo-3-deoxygalactonate kinase |
|
_____________137_____________________161\n_____________|_______________________|\n5'-CAG...GGCGA___GGCA_______C________CCAUG...CAG-3'\n______________UGC____GAGCAGG_GGCGCUUA\n______________|||____:||||:|_:||:||||\n______________ACG____UUCGUUC_UCGUGAAU\n3'-UUU...UUUGA___AA_________U________UUUUU...CAA-5'\n_____________|_______________________|\n_____________55______________________33\n |
154 -- 160 |
34 -- 40 |
-23.026 kcal/mol |
8.41527 kcal/mol |
6.17478 kcal/mol |
137 161@LB@ | |@LB@5'-CAG...GGCGA GGCA C CCAUG...CAG-3'@LB@ UGC GAGCAGG GGCGCUUA@LB@ ||| :||||:| :||:||||@LB@ ACG UUCGUUC UCGUGAAU@LB@3'-UUU...UUUGA AA U UUUUU...CAA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -8.44 kcal/mol@LB@Hybridization Energy -23.026 kcal/mol@LB@Unfolding Energy - mRNA 8.41527 kcal/mol@LB@Unfolding Energy - sRNA 6.17478 kcal/mol@LB@@LB@Position - mRNA 138 -- 160@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 34 -- 40@LB@ |
127 |
0.01193 |
0.3024 |
b3625 |
waaY |
-10.33 |
0.012897 |
24 -- 38 |
26 -- 41 |
lipopolysaccharide core biosynthesis protein |
|
_____________23_______________39\n_____________|________________|\n5'-CCA...AAAAU________________CCCCU...UAA-3'\n______________AGC_UUUAGAAAAUUC\n______________|||_:|||:|||||||\n______________UCG_GAAUUUUUUAAG\n3'-UUU...GUUCU___U____________CAAUG...CAA-5'\n_____________|________________|\n_____________42_______________25\n |
32 -- 38 |
26 -- 32 |
-12.5754 kcal/mol |
0.594404 kcal/mol |
1.64829 kcal/mol |
23 39@LB@ | |@LB@5'-CCA...AAAAU CCCCU...UAA-3'@LB@ AGC UUUAGAAAAUUC@LB@ ||| :|||:|||||||@LB@ UCG GAAUUUUUUAAG@LB@3'-UUU...GUUCU U CAAUG...CAA-5'@LB@ | |@LB@ 42 25@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -12.5754 kcal/mol@LB@Unfolding Energy - mRNA 0.594404 kcal/mol@LB@Unfolding Energy - sRNA 1.64829 kcal/mol@LB@@LB@Position - mRNA 24 -- 38@LB@Position - sRNA 26 -- 41@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 26 -- 32@LB@ |
129 |
0.01228 |
0.3033 |
b2249 |
yfaY |
-6.27 |
0.166554 |
88 -- 102 |
6 -- 22 |
inactive PncC family protein |
|
_____________87________________103\n_____________|_________________|\n5'-UUG...GGUUA_______UU________CCCUU...AGG-3'\n______________ACGCCAG____UCUGAU\n______________||:||||____||||||\n______________UGUGGUC____AGACUA\n3'-UUU...AGCAA_______CUUU______CACAA-5'\n_____________|_________________|\n_____________23________________5\n |
88 -- 94 |
16 -- 22 |
-16.5501 kcal/mol |
2.71406 kcal/mol |
7.56159 kcal/mol |
87 103@LB@ | |@LB@5'-UUG...GGUUA UU CCCUU...AGG-3'@LB@ ACGCCAG UCUGAU@LB@ ||:|||| ||||||@LB@ UGUGGUC AGACUA@LB@3'-UUU...AGCAA CUUU CACAA-5'@LB@ | |@LB@ 23 5@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -16.5501 kcal/mol@LB@Unfolding Energy - mRNA 2.71406 kcal/mol@LB@Unfolding Energy - sRNA 7.56159 kcal/mol@LB@@LB@Position - mRNA 88 -- 102@LB@Position - sRNA 6 -- 22@LB@Position Seed - mRNA 88 -- 94@LB@Position Seed - sRNA 16 -- 22@LB@ |
130 |
0.01234 |
0.3033 |
b2958 |
yggN |
-5.61 |
0.236844 |
227 -- 233 |
35 -- 41 |
DUF2884 family putative periplasmic protein |
|
_____________226_____234\n_____________|_______|\n5'-ACG...GCGGC_______UCAGU...UUG-3'\n______________AGCACUU\n______________|||||||\n______________UCGUGAA\n3'-UUU...GUUCU_______UUUUU...CAA-5'\n_____________|_______|\n_____________42______34\n |
227 -- 233 |
35 -- 41 |
-8.1936 kcal/mol |
0.976472 kcal/mol |
1.6033 kcal/mol |
226 234@LB@ | |@LB@5'-ACG...GCGGC UCAGU...UUG-3'@LB@ AGCACUU@LB@ |||||||@LB@ UCGUGAA@LB@3'-UUU...GUUCU UUUUU...CAA-5'@LB@ | |@LB@ 42 34@LB@@LB@@LB@Energy -5.61 kcal/mol@LB@Hybridization Energy -8.1936 kcal/mol@LB@Unfolding Energy - mRNA 0.976472 kcal/mol@LB@Unfolding Energy - sRNA 1.6033 kcal/mol@LB@@LB@Position - mRNA 227 -- 233@LB@Position - sRNA 35 -- 41@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 35 -- 41@LB@ |
128 |
0.01225 |
0.3033 |
b3299 |
rpmJ |
-5.94 |
0.199813 |
193 -- 212 |
24 -- 42 |
50S ribosomal subunit protein L36 |
|
_____________192__________________213\n_____________|____________________|\n5'-GGA...ACGGA_____AAAAU__________GCUUC...AUA-3'\n______________GAGUA_____GAAAGUUCGU\n______________:||:|_____:|||:|||||\n______________UUCGU_____UUUUUAAGCA\n3'-UUU...CGUUC_____GAAU___________AUGUG...CAA-5'\n_____________|____________________|\n_____________43___________________23\n |
206 -- 212 |
24 -- 30 |
-12.4383 kcal/mol |
4.85088 kcal/mol |
1.64896 kcal/mol |
192 213@LB@ | |@LB@5'-GGA...ACGGA AAAAU GCUUC...AUA-3'@LB@ GAGUA GAAAGUUCGU@LB@ :||:| :|||:|||||@LB@ UUCGU UUUUUAAGCA@LB@3'-UUU...CGUUC GAAU AUGUG...CAA-5'@LB@ | |@LB@ 43 23@LB@@LB@@LB@Energy -5.94 kcal/mol@LB@Hybridization Energy -12.4383 kcal/mol@LB@Unfolding Energy - mRNA 4.85088 kcal/mol@LB@Unfolding Energy - sRNA 1.64896 kcal/mol@LB@@LB@Position - mRNA 193 -- 212@LB@Position - sRNA 24 -- 42@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 24 -- 30@LB@ |