123 |
0.006073 |
0.1758 |
stm4355 |
yjeS |
-17.69 |
0.042665 |
80 -- 140 |
31 -- 90 |
putative Fe-S protein |
|
_____________79______________________________141\n_____________|_______________________________|\n_______5'-CGUU______________C________________AGUGU...UUA-3'\n______________GUUGC___CAUGAC_ACACAACA_C_CAGCC\n______________:||||___||::||_||||||||_|_||:||\n______________UAACG___GUGUUG_UGUGUUGU_G_GUUGG\n3'-UUU...CUGGU_____UUU______U________A_U_____CAUUC...UCA-5'\n_____________|_______________________________|\n_____________91______________________________30\n |
18 -- 24 |
71 -- 77 |
-27.2663 kcal/mol |
5.13395 kcal/mol |
8.62086 kcal/mol |
79 141@LB@ | |@LB@ 5'-CGUU C AGUGU...UUA-3'@LB@ GUUGC CAUGAC ACACAACA C CAGCC@LB@ :|||| ||::|| |||||||| | ||:||@LB@ UAACG GUGUUG UGUGUUGU G GUUGG@LB@3'-UUU...CUGGU UUU U A U CAUUC...UCA-5'@LB@ | |@LB@ 91 30@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -27.2663 kcal/mol@LB@Unfolding Energy - mRNA 5.13395 kcal/mol@LB@Unfolding Energy - sRNA 8.62086 kcal/mol@LB@@LB@Position - mRNA 80 -- 140@LB@Position - sRNA 31 -- 90@LB@Position Seed - mRNA 18 -- 24@LB@Position Seed - sRNA 71 -- 77@LB@ |
121 |
0.006021 |
0.1758 |
stm3903 |
ilvE |
-13.34 |
0.214101 |
130 -- 170 |
39 -- 78 |
branched chain amino acid aminotransferase |
|
_____________129__________________171\n_____________|____________________|\n5'-GGU...CCAGA___CU___C___U_______AAUCC...GUA-3'\n______________GCG___GC_ACA_CACAACA\n______________||:___:|_|||_|||||||\n______________CGU___UG_UGU_GUGUUGU\n3'-UUU...GUUAA___UUG__U___U_______AGUGU...UCA-5'\n_____________|____________________|\n_____________79___________________38\n |
164 -- 170 |
71 -- 77 |
-14.4922 kcal/mol |
2.12049 kcal/mol |
3.80671 kcal/mol |
129 171@LB@ | |@LB@5'-GGU...CCAGA CU C U AAUCC...GUA-3'@LB@ GCG GC ACA CACAACA@LB@ ||: :| ||| |||||||@LB@ CGU UG UGU GUGUUGU@LB@3'-UUU...GUUAA UUG U U AGUGU...UCA-5'@LB@ | |@LB@ 79 38@LB@@LB@@LB@Energy -13.34 kcal/mol@LB@Hybridization Energy -14.4922 kcal/mol@LB@Unfolding Energy - mRNA 2.12049 kcal/mol@LB@Unfolding Energy - sRNA 3.80671 kcal/mol@LB@@LB@Position - mRNA 130 -- 170@LB@Position - sRNA 39 -- 78@LB@Position Seed - mRNA 164 -- 170@LB@Position Seed - sRNA 71 -- 77@LB@ |
122 |
0.00604 |
0.1758 |
stm2353 |
hisQ |
-14.65 |
0.134227 |
190 -- 212 |
140 -- 163 |
amino acid ABC transporter permease |
|
_____________189______________________213\n_____________|________________________|\n5'-GAU...CAACA________UGCAUGU_________UUUUC...UCG-3'\n______________GGACAGGC________UGUACGGG\n______________||||||:|________|||||:||\n______________CCUGUCUG________ACAUGUCC\n3'-UUU...UGAUA________UCCCAUUU________UUCAC...UCA-5'\n_____________|________________________|\n_____________164______________________139\n |
206 -- 212 |
140 -- 146 |
-25.7393 kcal/mol |
6.65037 kcal/mol |
3.70771 kcal/mol |
189 213@LB@ | |@LB@5'-GAU...CAACA UGCAUGU UUUUC...UCG-3'@LB@ GGACAGGC UGUACGGG@LB@ ||||||:| |||||:||@LB@ CCUGUCUG ACAUGUCC@LB@3'-UUU...UGAUA UCCCAUUU UUCAC...UCA-5'@LB@ | |@LB@ 164 139@LB@@LB@@LB@Energy -14.65 kcal/mol@LB@Hybridization Energy -25.7393 kcal/mol@LB@Unfolding Energy - mRNA 6.65037 kcal/mol@LB@Unfolding Energy - sRNA 3.70771 kcal/mol@LB@@LB@Position - mRNA 190 -- 212@LB@Position - sRNA 140 -- 163@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 140 -- 146@LB@ |
120 |
0.006002 |
0.1758 |
stm2925 |
nlpD |
-17.26 |
0.050371 |
258 -- 274 |
153 -- 170 |
lipoprotein NlpD |
|
_____________257________________275\n_____________|__________________|\n5'-GUU...UGGUU___________U______UUGUA...CGG-3'\n______________UCACUAUGG_C_GGCAGG\n______________|||||||||_|_|:||||\n______________AGUGAUACC_G_CUGUCC\n3'-UUU...UAAUU_________U_U______CAUUU...UCA-5'\n_____________|__________________|\n_____________171________________152\n |
260 -- 266 |
162 -- 168 |
-24.411 kcal/mol |
4.59255 kcal/mol |
3.4766 kcal/mol |
257 275@LB@ | |@LB@5'-GUU...UGGUU U UUGUA...CGG-3'@LB@ UCACUAUGG C GGCAGG@LB@ ||||||||| | |:||||@LB@ AGUGAUACC G CUGUCC@LB@3'-UUU...UAAUU U U CAUUU...UCA-5'@LB@ | |@LB@ 171 152@LB@@LB@@LB@Energy -17.26 kcal/mol@LB@Hybridization Energy -24.411 kcal/mol@LB@Unfolding Energy - mRNA 4.59255 kcal/mol@LB@Unfolding Energy - sRNA 3.4766 kcal/mol@LB@@LB@Position - mRNA 258 -- 274@LB@Position - sRNA 153 -- 170@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 162 -- 168@LB@ |
127 |
0.006343 |
0.1774 |
stm1751 |
hns |
-12.42 |
0.292757 |
1 -- 14 |
147 -- 162 |
transcriptional regulator |
|
______________1_______________15\n______________|_______________|\n___________5'-________________AUCCC...UAG-3'\n______________GACAGAC__GGUGAGU\n______________|||||||__|||:|:|\n______________CUGUCUG__CCAUUUA\n3'-UUU...GAUAC_______UC_______CAUGU...UCA-5'\n_____________|________________|\n_____________163______________146\n |
8 -- 14 |
147 -- 153 |
-17.2475 kcal/mol |
3.56352 kcal/mol |
3.32093 kcal/mol |
1 15@LB@ | |@LB@ 5'- AUCCC...UAG-3'@LB@ GACAGAC GGUGAGU@LB@ ||||||| |||:|:|@LB@ CUGUCUG CCAUUUA@LB@3'-UUU...GAUAC UC CAUGU...UCA-5'@LB@ | |@LB@ 163 146@LB@@LB@@LB@Energy -12.42 kcal/mol@LB@Hybridization Energy -17.2475 kcal/mol@LB@Unfolding Energy - mRNA 3.56352 kcal/mol@LB@Unfolding Energy - sRNA 3.32093 kcal/mol@LB@@LB@Position - mRNA 1 -- 14@LB@Position - sRNA 147 -- 162@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 147 -- 153@LB@ |
125 |
0.006333 |
0.1774 |
stm3094 |
yggJ |
-12.37 |
0.297521 |
35 -- 55 |
69 -- 89 |
putative cytoplasmic protein |
|
_____________34____________________56\n_____________|_____________________|\n5'-GCG...GCCAA__________UUUU_______UGGGA...AGA-3'\n______________CAAACGCAGC____UAACGUC\n______________|||||:||:|____:|||:||\n______________GUUUGUGUUG____GUUGUAG\n3'-UUU...UUAAC__________UUGU_______UGUUG...UCA-5'\n_____________|_____________________|\n_____________90____________________68\n |
49 -- 55 |
69 -- 75 |
-19.7914 kcal/mol |
1.34113 kcal/mol |
4.32311 kcal/mol |
34 56@LB@ | |@LB@5'-GCG...GCCAA UUUU UGGGA...AGA-3'@LB@ CAAACGCAGC UAACGUC@LB@ |||||:||:| :|||:||@LB@ GUUUGUGUUG GUUGUAG@LB@3'-UUU...UUAAC UUGU UGUUG...UCA-5'@LB@ | |@LB@ 90 68@LB@@LB@@LB@Energy -12.37 kcal/mol@LB@Hybridization Energy -19.7914 kcal/mol@LB@Unfolding Energy - mRNA 1.34113 kcal/mol@LB@Unfolding Energy - sRNA 4.32311 kcal/mol@LB@@LB@Position - mRNA 35 -- 55@LB@Position - sRNA 69 -- 89@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 69 -- 75@LB@ |
136 |
0.006805 |
0.1774 |
stm2812 |
N/A |
-16.76 |
0.060981 |
84 -- 153 |
36 -- 90 |
MFS transporter |
|
_____________83_____________________________________________154\n_____________|______________________________________________|\n5'-GGC...AUCCG__C________CUCUCCUCAAAGC______UU_______UC_____UCCCC...UGC-3'\n______________GC_AACGCAAU_____________GCACGA__CAUCACG__ACCGU\n______________||_|||:|||:_____________:|||:|__||||||:__|||||\n______________CG_UUGUGUUG_____________UGUGUU__GUAGUGU__UGGCA\n3'-UUU...GUUAA__U________U__________________________________UUCGG...UCA-5'\n_____________|______________________________________________|\n_____________91_____________________________________________35\n |
116 -- 122 |
66 -- 72 |
-26.7431 kcal/mol |
6.46375 kcal/mol |
9.42239 kcal/mol |
83 154@LB@ | |@LB@5'-GGC...AUCCG C CUCUCCUCAAAGC UU UC UCCCC...UGC-3'@LB@ GC AACGCAAU GCACGA CAUCACG ACCGU@LB@ || |||:|||: :|||:| ||||||: |||||@LB@ CG UUGUGUUG UGUGUU GUAGUGU UGGCA@LB@3'-UUU...GUUAA U U UUCGG...UCA-5'@LB@ | |@LB@ 91 35@LB@@LB@@LB@Energy -16.76 kcal/mol@LB@Hybridization Energy -26.7431 kcal/mol@LB@Unfolding Energy - mRNA 6.46375 kcal/mol@LB@Unfolding Energy - sRNA 9.42239 kcal/mol@LB@@LB@Position - mRNA 84 -- 153@LB@Position - sRNA 36 -- 90@LB@Position Seed - mRNA 116 -- 122@LB@Position Seed - sRNA 66 -- 72@LB@ |
128 |
0.006467 |
0.1774 |
stm3907 |
N/A |
-18.55 |
0.030594 |
118 -- 173 |
37 -- 89 |
|
|
_____________117__________________________174\n_____________|____________________________|\n5'-UCA...AAAAA____________ACCAGU______G___AAAAC...UUU-3'\n______________CAGACGCAACAA______CAGCAU_AUA\n______________||:||:||||||______||:|||_|:|\n______________GUUUGUGUUGUU______GUUGUA_UGU\n3'-UUU...UUAAC____________GU__________G___UGGCA...UCA-5'\n_____________|____________________________|\n_____________90___________________________36\n |
123 -- 129 |
78 -- 84 |
-22.8944 kcal/mol |
3.16008 kcal/mol |
6.30461 kcal/mol |
117 174@LB@ | |@LB@5'-UCA...AAAAA ACCAGU G AAAAC...UUU-3'@LB@ CAGACGCAACAA CAGCAU AUA@LB@ ||:||:|||||| ||:||| |:|@LB@ GUUUGUGUUGUU GUUGUA UGU@LB@3'-UUU...UUAAC GU G UGGCA...UCA-5'@LB@ | |@LB@ 90 36@LB@@LB@@LB@Energy -18.55 kcal/mol@LB@Hybridization Energy -22.8944 kcal/mol@LB@Unfolding Energy - mRNA 3.16008 kcal/mol@LB@Unfolding Energy - sRNA 6.30461 kcal/mol@LB@@LB@Position - mRNA 118 -- 173@LB@Position - sRNA 37 -- 89@LB@Position Seed - mRNA 123 -- 129@LB@Position Seed - sRNA 78 -- 84@LB@ |
126 |
0.006333 |
0.1774 |
stm1584 |
ansP |
-14.21 |
0.157463 |
122 -- 184 |
36 -- 93 |
amino acid permease |
|
_____________121_________________185\n_____________|___________________|\n5'-AUA...UGUCA________UAUAACA____ACGUA...GUC-3'\n______________GGACAGGC_______GGUA\n______________||||||:|_______||||\n______________CCUGUCUG_______CCAU\n3'-UUU...UGAUA________UC_________UUACA...UCA-5'\n_____________|___________________|\n_____________94__________________35\n |
178 -- 184 |
156 -- 162 |
-15.5225 kcal/mol |
4.18435 kcal/mol |
3.12041 kcal/mol |
121 185@LB@ | |@LB@5'-AUA...UGUCA UAUAACA ACGUA...GUC-3'@LB@ GGACAGGC GGUA@LB@ ||||||:| ||||@LB@ CCUGUCUG CCAU@LB@3'-UUU...UGAUA UC UUACA...UCA-5'@LB@ | |@LB@ 94 35@LB@@LB@@LB@Energy -14.21 kcal/mol@LB@Hybridization Energy -15.5225 kcal/mol@LB@Unfolding Energy - mRNA 4.18435 kcal/mol@LB@Unfolding Energy - sRNA 3.12041 kcal/mol@LB@@LB@Position - mRNA 122 -- 184@LB@Position - sRNA 36 -- 93@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 156 -- 162@LB@ |
129 |
0.006472 |
0.1774 |
stm0158 |
acnB |
-11.80 |
0.356459 |
140 -- 172 |
33 -- 60 |
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|
_____________139________________173\n_____________|__________________|\n5'-AUU...CUUUU_________G_U______UUAAA...UGC-3'\n______________UUGUAAACA_A_UAACAC\n______________|||:|||||_|_:|||||\n______________AACGUUUGU_U_GUUGUG\n3'-UUU...UGGUU_________G_U______UUGUA...UCA-5'\n_____________|__________________|\n_____________61_________________32\n |
48 -- 54 |
84 -- 90 |
-17.8051 kcal/mol |
3.41045 kcal/mol |
3.73018 kcal/mol |
139 173@LB@ | |@LB@5'-AUU...CUUUU G U UUAAA...UGC-3'@LB@ UUGUAAACA A UAACAC@LB@ |||:||||| | :|||||@LB@ AACGUUUGU U GUUGUG@LB@3'-UUU...UGGUU G U UUGUA...UCA-5'@LB@ | |@LB@ 61 32@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -17.8051 kcal/mol@LB@Unfolding Energy - mRNA 3.41045 kcal/mol@LB@Unfolding Energy - sRNA 3.73018 kcal/mol@LB@@LB@Position - mRNA 140 -- 172@LB@Position - sRNA 33 -- 60@LB@Position Seed - mRNA 48 -- 54@LB@Position Seed - sRNA 84 -- 90@LB@ |