84 |
0.008129 |
0.3104 |
b2579 |
grcA |
-9.71 |
0.135356 |
279 -- 291 |
5 -- 18 |
autonomous glycyl radical cofactor |
|
_____________278____________292\n_____________|______________|\n5'-UUG...AAAAA______________GCAUC...UUG-3'\n______________GGCGAA_GCGCGUU\n______________::|:||_||||||:\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
285 -- 291 |
5 -- 11 |
-16.0784 kcal/mol |
5.14159 kcal/mol |
1.2243 kcal/mol |
278 292@LB@ | |@LB@5'-UUG...AAAAA GCAUC...UUG-3'@LB@ GGCGAA GCGCGUU@LB@ ::|:|| ||||||:@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -16.0784 kcal/mol@LB@Unfolding Energy - mRNA 5.14159 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 279 -- 291@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 5 -- 11@LB@ |
10 |
0.0002413 |
0.08171 |
b2594 |
rluD |
-15.70 |
0.011720 |
48 -- 64 |
5 -- 21 |
23S rRNA pseudouridine(1911 1915 1917) synthase |
|
_____________47________________65\n_____________|_________________|\n5'-CCC...CACCA____UUUC_________AUGAC...GUU-3'\n______________GAUA____AUGCGCGUC\n______________||||____|||||||||\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
58 -- 64 |
5 -- 11 |
-19.7285 kcal/mol |
2.7828 kcal/mol |
1.24955 kcal/mol |
47 65@LB@ | |@LB@5'-CCC...CACCA UUUC AUGAC...GUU-3'@LB@ GAUA AUGCGCGUC@LB@ |||| |||||||||@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -15.70 kcal/mol@LB@Hybridization Energy -19.7285 kcal/mol@LB@Unfolding Energy - mRNA 2.7828 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 48 -- 64@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 5 -- 11@LB@ |
155 |
0.0146 |
0.3104 |
b2614 |
grpE |
-10.46 |
0.101070 |
105 -- 125 |
1 -- 22 |
heat shock protein |
|
_____________104____________________126\n_____________|______________________|\n5'-GAG...AAGAU______________A__GC___CCUUG...CUG-3'\n______________UGAUGACAA_UGUG_GU__UUC\n______________||||:||||_||:|_||__|||\n______________ACUAUUGUU_ACGC_CA__AAG\n3'-UUU...CUACU_________U____G__GA___-5'\n_____________|_____________________|\n_____________23____________________1\n |
107 -- 113 |
14 -- 20 |
-17.1017 kcal/mol |
5.37697 kcal/mol |
1.25963 kcal/mol |
104 126@LB@ | |@LB@5'-GAG...AAGAU A GC CCUUG...CUG-3'@LB@ UGAUGACAA UGUG GU UUC@LB@ ||||:|||| ||:| || |||@LB@ ACUAUUGUU ACGC CA AAG@LB@3'-UUU...CUACU U G GA -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -17.1017 kcal/mol@LB@Unfolding Energy - mRNA 5.37697 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 105 -- 125@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 14 -- 20@LB@ |
1 |
0 |
0 |
b2687 |
luxS |
-86.29 |
0.000000 |
61 -- 132 |
1 -- 72 |
S-ribosylhomocysteine lyase |
|
_____________60_______________________________________________________________________133\n_____________|________________________________________________________________________|\n5'-GAA...AAAGA________________________________________________________________________AUAUA...UCA-3'\n______________AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC\n______________||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG\n___________3'-________________________________________________________________________-5'\n______________|______________________________________________________________________|\n______________72_____________________________________________________________________1\n |
126 -- 132 |
1 -- 7 |
-138.099 kcal/mol |
30.0464 kcal/mol |
21.7639 kcal/mol |
60 133@LB@ | |@LB@5'-GAA...AAAGA AUAUA...UCA-3'@LB@ AAAAGGCCACUCGUGAGUGGCCAAAAUUUCAUCUCUGAAUUCAGGGAUGAUGAUAACAAAUGCGCGUCUUUC@LB@ ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ UUUUCCGGUGAGCACUCACCGGUUUUAAAGUAGAGACUUAAGUCCCUACUACUAUUGUUUACGCGCAGAAAG@LB@ 3'- -5'@LB@ | |@LB@ 72 1@LB@@LB@@LB@Energy -86.29 kcal/mol@LB@Hybridization Energy -138.099 kcal/mol@LB@Unfolding Energy - mRNA 30.0464 kcal/mol@LB@Unfolding Energy - sRNA 21.7639 kcal/mol@LB@@LB@Position - mRNA 61 -- 132@LB@Position - sRNA 1 -- 72@LB@Position Seed - mRNA 126 -- 132@LB@Position Seed - sRNA 1 -- 7@LB@ |
194 |
0.0191 |
0.3104 |
b2698 |
recX |
-10.17 |
0.113250 |
93 -- 107 |
8 -- 22 |
regulatory protein for RecA |
|
_____________92______________108\n_____________|_______________|\n5'-AAA...GUAGA__________G____AGCAG...GAC-3'\n______________UGAUAGCGAA_GCGU\n______________|||||:|:||_|||:\n______________ACUAUUGUUU_CGCG\n3'-UUU...CUACU__________A____CAGAAAG-5'\n_____________|_______________|\n_____________23______________7\n |
96 -- 102 |
13 -- 19 |
-16.2974 kcal/mol |
4.88496 kcal/mol |
1.23838 kcal/mol |
92 108@LB@ | |@LB@5'-AAA...GUAGA G AGCAG...GAC-3'@LB@ UGAUAGCGAA GCGU@LB@ |||||:|:|| |||:@LB@ ACUAUUGUUU CGCG@LB@3'-UUU...CUACU A CAGAAAG-5'@LB@ | |@LB@ 23 7@LB@@LB@@LB@Energy -10.17 kcal/mol@LB@Hybridization Energy -16.2974 kcal/mol@LB@Unfolding Energy - mRNA 4.88496 kcal/mol@LB@Unfolding Energy - sRNA 1.23838 kcal/mol@LB@@LB@Position - mRNA 93 -- 107@LB@Position - sRNA 8 -- 22@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 13 -- 19@LB@ |
35 |
0.002165 |
0.2094 |
b2714 |
ascG |
-14.61 |
0.018547 |
188 -- 213 |
10 -- 30 |
asc operon transcriptional repressor; prpBC operon repressor |
|
_____________187________________________214\n_____________|__________________________|\n5'-AAA...UGUAA________AAA_________CG____UGGAA...AAG-3'\n______________AGGGAUGA___UGAUGACGA__AUGC\n______________||||||||___||||:||:|__||||\n______________UCCCUACU___ACUAUUGUU__UACG\n3'-UUU...UUAAG__________________________CGCAG...AAG-5'\n_____________|__________________________|\n_____________31_________________________9\n |
201 -- 207 |
14 -- 20 |
-25.4703 kcal/mol |
3.44882 kcal/mol |
7.41066 kcal/mol |
187 214@LB@ | |@LB@5'-AAA...UGUAA AAA CG UGGAA...AAG-3'@LB@ AGGGAUGA UGAUGACGA AUGC@LB@ |||||||| ||||:||:| ||||@LB@ UCCCUACU ACUAUUGUU UACG@LB@3'-UUU...UUAAG CGCAG...AAG-5'@LB@ | |@LB@ 31 9@LB@@LB@@LB@Energy -14.61 kcal/mol@LB@Hybridization Energy -25.4703 kcal/mol@LB@Unfolding Energy - mRNA 3.44882 kcal/mol@LB@Unfolding Energy - sRNA 7.41066 kcal/mol@LB@@LB@Position - mRNA 188 -- 213@LB@Position - sRNA 10 -- 30@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 14 -- 20@LB@ |
2 |
9.051e-06 |
0.01532 |
b2745 |
truD |
-15.77 |
0.011349 |
54 -- 69 |
2 -- 17 |
tRNA(Glu) pseudouridine(13) synthase |
|
_____________53_______________70\n_____________|________________|\n5'-AAC...AUUCC____________G___AUUGC...UGG-3'\n______________ACAAAUGCGCGU_UUU\n______________||||||||||||_|||\n______________UGUUUACGCGCA_AAA\n3'-UUU...ACUAU____________G___G-5'\n_____________|________________|\n_____________18_______________1\n |
59 -- 65 |
6 -- 12 |
-22.0257 kcal/mol |
5.01487 kcal/mol |
1.23894 kcal/mol |
53 70@LB@ | |@LB@5'-AAC...AUUCC G AUUGC...UGG-3'@LB@ ACAAAUGCGCGU UUU@LB@ |||||||||||| |||@LB@ UGUUUACGCGCA AAA@LB@3'-UUU...ACUAU G G-5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -22.0257 kcal/mol@LB@Unfolding Energy - mRNA 5.01487 kcal/mol@LB@Unfolding Energy - sRNA 1.23894 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 2 -- 17@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 6 -- 12@LB@ |
4 |
4.059e-05 |
0.03436 |
b2748 |
ftsB |
-19.92 |
0.001892 |
154 -- 190 |
1 -- 44 |
cell division protein |
|
_____________153___________________________________________191\n_____________|_____________________________________________|\n5'-GGG...UAGAG_______C____G__U_____________________________AGGGG...AUG-3'\n______________UCGUCUU_GGAU_CA_GGGAUGAUGA_______UGC_CGUUUUUC\n______________||:|||:_|:||_||_||||||||||_______|||_|||:||||\n______________AGUAGAG_CUUA_GU_CCCUACUACU_______ACG_GCAGAAAG\n3'-UUU...UUUAA_______A____A_____________AUUGUUU___C________-5'\n_____________|____________________________________________|\n_____________45___________________________________________1\n |
184 -- 190 |
1 -- 7 |
-40.1368 kcal/mol |
10.7611 kcal/mol |
9.45578 kcal/mol |
153 191@LB@ | |@LB@5'-GGG...UAGAG C G U AGGGG...AUG-3'@LB@ UCGUCUU GGAU CA GGGAUGAUGA UGC CGUUUUUC@LB@ ||:|||: |:|| || |||||||||| ||| |||:||||@LB@ AGUAGAG CUUA GU CCCUACUACU ACG GCAGAAAG@LB@3'-UUU...UUUAA A A AUUGUUU C -5'@LB@ | |@LB@ 45 1@LB@@LB@@LB@Energy -19.92 kcal/mol@LB@Hybridization Energy -40.1368 kcal/mol@LB@Unfolding Energy - mRNA 10.7611 kcal/mol@LB@Unfolding Energy - sRNA 9.45578 kcal/mol@LB@@LB@Position - mRNA 154 -- 190@LB@Position - sRNA 1 -- 44@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 1 -- 7@LB@ |
59 |
0.005538 |
0.3084 |
b2812 |
tcdA |
-16.71 |
0.007603 |
29 -- 48 |
1 -- 19 |
tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
|
_____________28___________________49\n_____________|____________________|\n5'-GUG...AUUAU____U___________G___AUGCC...UUU-3'\n______________UGAC_AAGUGCGCGUU_UUC\n______________|:||_||:|||||||:_|||\n______________AUUG_UUUACGCGCAG_AAG\n3'-UUU...CUACU________________A___-5'\n_____________|___________________|\n_____________20__________________1\n |
38 -- 44 |
5 -- 11 |
-22.1898 kcal/mol |
4.2278 kcal/mol |
1.25156 kcal/mol |
28 49@LB@ | |@LB@5'-GUG...AUUAU U G AUGCC...UUU-3'@LB@ UGAC AAGUGCGCGUU UUC@LB@ |:|| ||:|||||||: |||@LB@ AUUG UUUACGCGCAG AAG@LB@3'-UUU...CUACU A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -16.71 kcal/mol@LB@Hybridization Energy -22.1898 kcal/mol@LB@Unfolding Energy - mRNA 4.2278 kcal/mol@LB@Unfolding Energy - sRNA 1.25156 kcal/mol@LB@@LB@Position - mRNA 29 -- 48@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 38 -- 44@LB@Position Seed - sRNA 5 -- 11@LB@ |
25 |
0.001519 |
0.1943 |
b2817 |
amiC |
-17.97 |
0.004427 |
110 -- 131 |
1 -- 21 |
N-acetylmuramoyl-L-alanine amidase |
|
_____________109____________________132\n_____________|______________________|\n5'-AGU...UAUUA__________UA__________GCUAA...UCA-3'\n______________GAUGACAGAU__UGCGUCUUUC\n______________|||:|||:||__:|||||||||\n______________CUAUUGUUUA__GCGCAGAAAG\n3'-UUU...UACUA__________C___________-5'\n_____________|_____________________|\n_____________22____________________1\n |
125 -- 131 |
1 -- 7 |
-25.6931 kcal/mol |
6.46841 kcal/mol |
1.25763 kcal/mol |
109 132@LB@ | |@LB@5'-AGU...UAUUA UA GCUAA...UCA-3'@LB@ GAUGACAGAU UGCGUCUUUC@LB@ |||:|||:|| :|||||||||@LB@ CUAUUGUUUA GCGCAGAAAG@LB@3'-UUU...UACUA C -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -17.97 kcal/mol@LB@Hybridization Energy -25.6931 kcal/mol@LB@Unfolding Energy - mRNA 6.46841 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 110 -- 131@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 1 -- 7@LB@ |