150 |
0.00729 |
0.1634 |
b3184 |
yhbE |
-11.29 |
0.093352 |
190 -- 235 |
1 -- 50 |
EamA family inner membrane putative transporter |
|
_____________189_________________________________________________236\n_____________|___________________________________________________|\n5'-AAG...UUGCA____AUAC___A____AA_____A____GGCAU___CAUUC__________GCUCA...UGG-3'\n______________GGGA____GGU___UG__GCAGC_GGCA_____UGG________UUUUGGC\n______________:|||____|||___||__:||||_:|||_____|||________|||::||\n______________UCCU____CCA___AC__UGUCG_UCGU_____ACC________AAAGUCG\n3'-UUU...CCGAU____CCA____AGG__CA_____A____AAAAU___CAAUACAA_______-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-25.8939 kcal/mol |
9.93833 kcal/mol |
4.6634 kcal/mol |
189 236@LB@ | |@LB@5'-AAG...UUGCA AUAC A AA A GGCAU CAUUC GCUCA...UGG-3'@LB@ GGGA GGU UG GCAGC GGCA UGG UUUUGGC@LB@ :||| ||| || :|||| :||| ||| |||::||@LB@ UCCU CCA AC UGUCG UCGU ACC AAAGUCG@LB@3'-UUU...CCGAU CCA AGG CA A AAAAU CAAUACAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -25.8939 kcal/mol@LB@Unfolding Energy - mRNA 9.93833 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 235@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
124 |
0.00526 |
0.1416 |
b3170 |
rimP |
-10.72 |
0.121991 |
191 -- 217 |
24 -- 49 |
ribosome maturation factor for 30S subunits |
|
_____________190__________________________218\n_____________|____________________________|\n5'-CUU...GUCUU________G_____UCC___UUAG____AAAAU...CAU-3'\n______________GGGGGUGG__CUUG___ACA____AGCA\n______________||:|||||__|:||___|||____||||\n______________CCUCCACC__GGAC___UGU____UCGU\n3'-UUU...CGAUU________AA____CA____CGA_____AAAAU...UCG-5'\n_____________|____________________________|\n_____________50___________________________23\n |
192 -- 198 |
42 -- 48 |
-23.9554 kcal/mol |
8.6777 kcal/mol |
4.5591 kcal/mol |
190 218@LB@ | |@LB@5'-CUU...GUCUU G UCC UUAG AAAAU...CAU-3'@LB@ GGGGGUGG CUUG ACA AGCA@LB@ ||:||||| |:|| ||| ||||@LB@ CCUCCACC GGAC UGU UCGU@LB@3'-UUU...CGAUU AA CA CGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -23.9554 kcal/mol@LB@Unfolding Energy - mRNA 8.6777 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 191 -- 217@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 42 -- 48@LB@ |
151 |
0.007423 |
0.1652 |
b2895 |
fldB |
-9.53 |
0.202764 |
191 -- 224 |
1 -- 31 |
flavodoxin 2 |
|
_____________190__________________________________225\n_____________|____________________________________|\n5'-CGG...CGAGA____UA____AUGAA_______CU_______A____UCCAG...AUA-3'\n______________AGCU__CGUU_____UAUGGGU____UUUUU_CGGU\n______________||||__|:||_____|||||||____|||||_|:|:\n______________UCGA__GUAA_____AUACCCA____AAAAA_GUCG\n3'-UUU...CCAUG____UC____A___________AUAC__________-5'\n_____________|___________________________________|\n_____________32__________________________________1\n |
206 -- 212 |
14 -- 20 |
-17.4845 kcal/mol |
6.4701 kcal/mol |
1.48722 kcal/mol |
190 225@LB@ | |@LB@5'-CGG...CGAGA UA AUGAA CU A UCCAG...AUA-3'@LB@ AGCU CGUU UAUGGGU UUUUU CGGU@LB@ |||| |:|| ||||||| ||||| |:|:@LB@ UCGA GUAA AUACCCA AAAAA GUCG@LB@3'-UUU...CCAUG UC A AUAC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -17.4845 kcal/mol@LB@Unfolding Energy - mRNA 6.4701 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 14 -- 20@LB@ |
171 |
0.00925 |
0.1803 |
b3832 |
rmuC |
-14.29 |
0.017807 |
191 -- 257 |
1 -- 50 |
DNA recombination protein |
|
_____________190___________________________________________________________________258\n_____________|_____________________________________________________________________|\n5'-AAA...GCGUC______CGUUG___A____UCAAUCA____UUAC_______UU_____G___________GCAA_____UGGCU...AGC-3'\n______________AGGAGG_____UGG_UUUC_______UGGU____GCAGUUA__GCGUU__GUGGG_UGUG____UUGGC\n______________||||||_____|||_||:|_______||||____:|||:||__||:||__:||||_|:||____|::||\n______________UCCUCC_____ACC_AAGG_______ACCA____UGUCGAU__CGUAA__UACCC_AUAC____AGUCG\n3'-UUU...CCGAU________________________________________________AA_____A____AAAA_____-5'\n_____________|____________________________________________________________________|\n_____________51___________________________________________________________________1\n |
225 -- 231 |
27 -- 33 |
-40.6833 kcal/mol |
21.7322 kcal/mol |
4.6634 kcal/mol |
190 258@LB@ | |@LB@5'-AAA...GCGUC CGUUG A UCAAUCA UUAC UU G GCAA UGGCU...AGC-3'@LB@ AGGAGG UGG UUUC UGGU GCAGUUA GCGUU GUGGG UGUG UUGGC@LB@ |||||| ||| ||:| |||| :|||:|| ||:|| :|||| |:|| |::||@LB@ UCCUCC ACC AAGG ACCA UGUCGAU CGUAA UACCC AUAC AGUCG@LB@3'-UUU...CCGAU AA A AAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -14.29 kcal/mol@LB@Hybridization Energy -40.6833 kcal/mol@LB@Unfolding Energy - mRNA 21.7322 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 191 -- 257@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 27 -- 33@LB@ |
12 |
4.171e-05 |
0.01168 |
b0814 |
ompX |
-14.35 |
0.017131 |
192 -- 226 |
1 -- 48 |
outer membrane protein X |
|
_____________191______________________________________________227\n_____________|________________________________________________|\n5'-CUG...CAUUU_________A___AAAAAAAUU__________________C_______ACUGG...CAC-3'\n______________GAGGUGGUU__UG_________GCA____________UGU_UUUCAGC\n______________|||||||||__||_________|||____________|||_|||||||\n______________CUCCACCAA__AC_________CGU____________ACA_AAAGUCG\n3'-UUU...GAUUC_________GG__CAUGUCGAU___AAAAUACCCAAU___A_______-5'\n_____________|_______________________________________________|\n_____________49______________________________________________1\n |
220 -- 226 |
1 -- 7 |
-27.166 kcal/mol |
8.20777 kcal/mol |
4.60955 kcal/mol |
191 227@LB@ | |@LB@5'-CUG...CAUUU A AAAAAAAUU C ACUGG...CAC-3'@LB@ GAGGUGGUU UG GCA UGU UUUCAGC@LB@ ||||||||| || ||| ||| |||||||@LB@ CUCCACCAA AC CGU ACA AAAGUCG@LB@3'-UUU...GAUUC GG CAUGUCGAU AAAAUACCCAAU A -5'@LB@ | |@LB@ 49 1@LB@@LB@@LB@Energy -14.35 kcal/mol@LB@Hybridization Energy -27.166 kcal/mol@LB@Unfolding Energy - mRNA 8.20777 kcal/mol@LB@Unfolding Energy - sRNA 4.60955 kcal/mol@LB@@LB@Position - mRNA 192 -- 226@LB@Position - sRNA 1 -- 48@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 1 -- 7@LB@ |
28 |
0.000409 |
0.0491 |
b1688 |
ydiK |
-9.69 |
0.189548 |
195 -- 219 |
1 -- 33 |
UPF0118 family inner membrane protein |
|
_____________194_______________________________220\n_____________|_________________________________|\n5'-AUG...GAAAA__________________UAA_____CG_____CCAGG...CCU-3'\n______________GUAGUUA________UGG___AUGUU__UCAGC\n______________::||:||________|||___|||||__|||||\n______________UGUCGAU________ACC___UACAA__AGUCG\n3'-UUU...GACCA_______CGUAAAAU___CAA_____AA_____-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
195 -- 201 |
27 -- 33 |
-14.5165 kcal/mol |
3.32905 kcal/mol |
1.49313 kcal/mol |
194 220@LB@ | |@LB@5'-AUG...GAAAA UAA CG CCAGG...CCU-3'@LB@ GUAGUUA UGG AUGUU UCAGC@LB@ ::||:|| ||| ||||| |||||@LB@ UGUCGAU ACC UACAA AGUCG@LB@3'-UUU...GACCA CGUAAAAU CAA AA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -14.5165 kcal/mol@LB@Unfolding Energy - mRNA 3.32905 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 195 -- 219@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 27 -- 33@LB@ |
50 |
0.001175 |
0.07744 |
b3543 |
dppB |
-14.13 |
0.019609 |
196 -- 210 |
1 -- 17 |
dipeptide/heme ABC transporter permease |
|
_____________195_______________211\n_____________|_________________|\n5'-CGG...AAUCC__________G______UUAUU...AUC-3'\n______________GGGUUAUGUU___CAGU\n______________||||||||||___|||:\n______________CCCAAUACAA___GUCG\n3'-UUU...AAAUA__________AAA____-5'\n_____________|________________|\n_____________18_______________1\n |
199 -- 205 |
8 -- 14 |
-17.9134 kcal/mol |
2.84721 kcal/mol |
0.931609 kcal/mol |
195 211@LB@ | |@LB@5'-CGG...AAUCC G UUAUU...AUC-3'@LB@ GGGUUAUGUU CAGU@LB@ |||||||||| |||:@LB@ CCCAAUACAA GUCG@LB@3'-UUU...AAAUA AAA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -14.13 kcal/mol@LB@Hybridization Energy -17.9134 kcal/mol@LB@Unfolding Energy - mRNA 2.84721 kcal/mol@LB@Unfolding Energy - sRNA 0.931609 kcal/mol@LB@@LB@Position - mRNA 196 -- 210@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 8 -- 14@LB@ |
119 |
0.005024 |
0.1407 |
b2342 |
fadI |
-9.59 |
0.197573 |
199 -- 214 |
6 -- 21 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________198______________215\n_____________|________________|\n5'-UCC...GAGUG________CAG_____ACCGC...AUG-3'\n______________UUAUGGGU___GUUUU\n______________||||||||___|||||\n______________AAUACCCA___CAAAA\n3'-UUU...CGUAA________AUA_____AGUCG-5'\n_____________|________________|\n_____________22_______________5\n |
200 -- 206 |
14 -- 20 |
-13.0434 kcal/mol |
3.24348 kcal/mol |
0.208077 kcal/mol |
198 215@LB@ | |@LB@5'-UCC...GAGUG CAG ACCGC...AUG-3'@LB@ UUAUGGGU GUUUU@LB@ |||||||| |||||@LB@ AAUACCCA CAAAA@LB@3'-UUU...CGUAA AUA AGUCG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.0434 kcal/mol@LB@Unfolding Energy - mRNA 3.24348 kcal/mol@LB@Unfolding Energy - sRNA 0.208077 kcal/mol@LB@@LB@Position - mRNA 199 -- 214@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 14 -- 20@LB@ |
36 |
0.0006761 |
0.06313 |
b0759 |
galE |
-8.98 |
0.250354 |
205 -- 236 |
22 -- 48 |
UDP-galactose-4-epimerase |
|
_____________204_______________________________237\n_____________|_________________________________|\n5'-GCA...UAUGA___UUC_____A__GG____A____________GGAAG...UCU-3'\n______________GAG___UGGUU_CC__UGGU_GCGGUUA_CAUU\n______________|||___|||||_||__||||_:|:|:||_||||\n______________CUC___ACCAA_GG__ACCA_UGUCGAU_GUAA\n3'-UUU...GAUUC___C________________________C____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________49________________________________21\n |
226 -- 232 |
27 -- 33 |
-23.3933 kcal/mol |
9.85191 kcal/mol |
4.55969 kcal/mol |
204 237@LB@ | |@LB@5'-GCA...UAUGA UUC A GG A GGAAG...UCU-3'@LB@ GAG UGGUU CC UGGU GCGGUUA CAUU@LB@ ||| ||||| || |||| :|:|:|| ||||@LB@ CUC ACCAA GG ACCA UGUCGAU GUAA@LB@3'-UUU...GAUUC C C AAUAC...UCG-5'@LB@ | |@LB@ 49 21@LB@@LB@@LB@Energy -8.98 kcal/mol@LB@Hybridization Energy -23.3933 kcal/mol@LB@Unfolding Energy - mRNA 9.85191 kcal/mol@LB@Unfolding Energy - sRNA 4.55969 kcal/mol@LB@@LB@Position - mRNA 205 -- 236@LB@Position - sRNA 22 -- 48@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 27 -- 33@LB@ |
97 |
0.003376 |
0.117 |
b2145 |
yeiS |
-12.83 |
0.042234 |
207 -- 237 |
4 -- 35 |
DUF2542 family protein |
|
_____________206_______________________________238\n_____________|_________________________________|\n5'-AUG...UGGAU___________U______C_____CC_______UCCUU...AUA-3'\n______________GUACAGC_AGU_UUUUGU__GUUG__GUUUUUU\n______________|||||||_||:_||||:|__|||:__||||||:\n______________CAUGUCG_UCG_AAAAUA__CAAU__CAAAAAG\n3'-UUU...AGGAC_______A___U______CC____A________UCG-5'\n_____________|_________________________________|\n_____________36________________________________3\n |
231 -- 237 |
4 -- 10 |
-21.2811 kcal/mol |
6.9566 kcal/mol |
1.49488 kcal/mol |
206 238@LB@ | |@LB@5'-AUG...UGGAU U C CC UCCUU...AUA-3'@LB@ GUACAGC AGU UUUUGU GUUG GUUUUUU@LB@ ||||||| ||: ||||:| |||: ||||||:@LB@ CAUGUCG UCG AAAAUA CAAU CAAAAAG@LB@3'-UUU...AGGAC A U CC A UCG-5'@LB@ | |@LB@ 36 3@LB@@LB@@LB@Energy -12.83 kcal/mol@LB@Hybridization Energy -21.2811 kcal/mol@LB@Unfolding Energy - mRNA 6.9566 kcal/mol@LB@Unfolding Energy - sRNA 1.49488 kcal/mol@LB@@LB@Position - mRNA 207 -- 237@LB@Position - sRNA 4 -- 35@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 4 -- 10@LB@ |