| 114 |
0.006011 |
0.1855 |
b0422 |
xseB |
-10.73 |
0.101337 |
104 -- 119 |
73 -- 87 |
exonuclease VII small subunit |
|
_____________103______________120\n_____________|________________|\n5'-CAA...CGCUU________A__U____UUACC...AAG-3'\n______________UGCUGUGC_CA_CACC\n______________|:|||:||_||_||||\n______________AUGACGCG_GU_GUGG\n3'-UUU...CGCUU___________U____UCCCU...GUG-5'\n_____________|________________|\n_____________88_______________72\n |
105 -- 111 |
80 -- 86 |
-20.3088 kcal/mol |
2.628 kcal/mol |
6.95602 kcal/mol |
103 120@LB@ | |@LB@5'-CAA...CGCUU A U UUACC...AAG-3'@LB@ UGCUGUGC CA CACC@LB@ |:|||:|| || ||||@LB@ AUGACGCG GU GUGG@LB@3'-UUU...CGCUU U UCCCU...GUG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -10.73 kcal/mol@LB@Hybridization Energy -20.3088 kcal/mol@LB@Unfolding Energy - mRNA 2.628 kcal/mol@LB@Unfolding Energy - sRNA 6.95602 kcal/mol@LB@@LB@Position - mRNA 104 -- 119@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 80 -- 86@LB@ |
| 115 |
0.006085 |
0.1855 |
b3030 |
parE |
-11.34 |
0.077071 |
10 -- 31 |
65 -- 86 |
DNA topoisomerase IV subunit B |
|
_____________9______________________32\n_____________|______________________|\n5'-UUU...AUCUG_____UG_____GAC_______GAAGU...ACC-3'\n______________GCUGC__CAACA___GGGAGAU\n______________:||||__|||||___||||:||\n______________UGACG__GUUGU___CCCUUUA\n3'-UUU...GCUUA_____CG_____GGU_______GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
25 -- 31 |
65 -- 71 |
-24.4704 kcal/mol |
5.74549 kcal/mol |
7.38332 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...AUCUG UG GAC GAAGU...ACC-3'@LB@ GCUGC CAACA GGGAGAU@LB@ :|||| ||||| ||||:||@LB@ UGACG GUUGU CCCUUUA@LB@3'-UUU...GCUUA CG GGU GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -24.4704 kcal/mol@LB@Unfolding Energy - mRNA 5.74549 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 65 -- 71@LB@ |
| 116 |
0.006112 |
0.1855 |
b1260 |
trpA |
-12.39 |
0.048115 |
172 -- 199 |
63 -- 89 |
tryptophan synthase alpha subunit |
|
_____________171__________________________200\n_____________|____________________________|\n5'-GCC...UUCAC______U__AA_____GA__________GAUGG...CAU-3'\n______________GAUAUU_UG__AGCAC__GGGGAAAUCU\n______________:|||:|_:|__|:|||__:|||||||||\n______________UUAUGA_GC__UUGUG__UCCCUUUAGA\n3'-UUU...CGCGC______C__GG_____G___________ACCGA...GUG-5'\n_____________|____________________________|\n_____________90___________________________62\n |
193 -- 199 |
63 -- 69 |
-25.3377 kcal/mol |
5.06327 kcal/mol |
7.88429 kcal/mol |
171 200@LB@ | |@LB@5'-GCC...UUCAC U AA GA GAUGG...CAU-3'@LB@ GAUAUU UG AGCAC GGGGAAAUCU@LB@ :|||:| :| |:||| :|||||||||@LB@ UUAUGA GC UUGUG UCCCUUUAGA@LB@3'-UUU...CGCGC C GG G ACCGA...GUG-5'@LB@ | |@LB@ 90 62@LB@@LB@@LB@Energy -12.39 kcal/mol@LB@Hybridization Energy -25.3377 kcal/mol@LB@Unfolding Energy - mRNA 5.06327 kcal/mol@LB@Unfolding Energy - sRNA 7.88429 kcal/mol@LB@@LB@Position - mRNA 172 -- 199@LB@Position - sRNA 63 -- 89@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 118 |
0.006444 |
0.1913 |
b0189 |
rof |
-9.63 |
0.163299 |
226 -- 241 |
29 -- 45 |
modulator of Rho-dependent transcription termination |
|
_____________225_______________242\n_____________|_________________|\n5'-AGG...AAUCA_________________UAAUC...GCG-3'\n______________AUUGUGAUGA_UUACGA\n______________|||:||||||_||||:|\n______________UAAUACUACU_AAUGUU\n3'-UUU...UUUAA__________C______CCCGU...GUG-5'\n_____________|_________________|\n_____________46________________28\n |
229 -- 235 |
36 -- 42 |
-15.4032 kcal/mol |
3.82623 kcal/mol |
1.94966 kcal/mol |
225 242@LB@ | |@LB@5'-AGG...AAUCA UAAUC...GCG-3'@LB@ AUUGUGAUGA UUACGA@LB@ |||:|||||| ||||:|@LB@ UAAUACUACU AAUGUU@LB@3'-UUU...UUUAA C CCCGU...GUG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -9.63 kcal/mol@LB@Hybridization Energy -15.4032 kcal/mol@LB@Unfolding Energy - mRNA 3.82623 kcal/mol@LB@Unfolding Energy - sRNA 1.94966 kcal/mol@LB@@LB@Position - mRNA 226 -- 241@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 119 |
0.006508 |
0.1913 |
b3834 |
ubiJ |
-9.73 |
0.156135 |
145 -- 181 |
28 -- 78 |
aerobic ubiquinone synthesis protein SCP2 family protein |
|
_____________144_________________________________________________182\n_____________|___________________________________________________|\n5'-GCU...AAUCU____G______UUGUGGC_____A___________________________UUCUG...UGG-3'\n______________GACG_CAGGGG_______GCUGC_UCGU______________GGUUAUAAG\n______________:||:_|||||:_______|||||_:|||______________:||||:|||\n______________UUGU_GUCCCU_______CGACG_GGCA______________UCAAUGUUC\n3'-UUU...CGCGG____G______UUAGAAC_____C____UUUAAUAAUACUAC_________CCGUG...GUG-5'\n_____________|___________________________________________________|\n_____________79__________________________________________________27\n |
175 -- 181 |
28 -- 34 |
-33.2852 kcal/mol |
14.1676 kcal/mol |
9.38606 kcal/mol |
144 182@LB@ | |@LB@5'-GCU...AAUCU G UUGUGGC A UUCUG...UGG-3'@LB@ GACG CAGGGG GCUGC UCGU GGUUAUAAG@LB@ :||: |||||: ||||| :||| :||||:|||@LB@ UUGU GUCCCU CGACG GGCA UCAAUGUUC@LB@3'-UUU...CGCGG G UUAGAAC C UUUAAUAAUACUAC CCGUG...GUG-5'@LB@ | |@LB@ 79 27@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -33.2852 kcal/mol@LB@Unfolding Energy - mRNA 14.1676 kcal/mol@LB@Unfolding Energy - sRNA 9.38606 kcal/mol@LB@@LB@Position - mRNA 145 -- 181@LB@Position - sRNA 28 -- 78@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 121 |
0.006643 |
0.1913 |
b1813 |
nudL |
-11.92 |
0.059353 |
114 -- 132 |
70 -- 86 |
putative CoA pyrophosphohydrolase weak 3-phosphohydroxypyruvate phosphatase |
|
_____________113_________________133\n_____________|___________________|\n5'-CCU...GUGGA____U________G_____AAGAA...CUG-3'\n______________AUUG_CGCCGAUA_CCAGG\n______________|:||_||||:|:|_|||||\n______________UGAC_GCGGUUGU_GGUCC\n3'-UUU...GCUUA___________________CUUUA...GUG-5'\n_____________|___________________|\n_____________87__________________69\n |
120 -- 126 |
75 -- 81 |
-24.7024 kcal/mol |
5.50013 kcal/mol |
7.27772 kcal/mol |
113 133@LB@ | |@LB@5'-CCU...GUGGA U G AAGAA...CUG-3'@LB@ AUUG CGCCGAUA CCAGG@LB@ |:|| ||||:|:| |||||@LB@ UGAC GCGGUUGU GGUCC@LB@3'-UUU...GCUUA CUUUA...GUG-5'@LB@ | |@LB@ 87 69@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -24.7024 kcal/mol@LB@Unfolding Energy - mRNA 5.50013 kcal/mol@LB@Unfolding Energy - sRNA 7.27772 kcal/mol@LB@@LB@Position - mRNA 114 -- 132@LB@Position - sRNA 70 -- 86@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 75 -- 81@LB@ |
| 122 |
0.006658 |
0.1913 |
b0600 |
ybdL |
-10.23 |
0.125775 |
275 -- 297 |
68 -- 86 |
methionine aminotransferase PLP-dependent |
|
_____________274_____________________298\n_____________|_______________________|\n5'-UCA...AGCGC___G____AG__________C__UUA-3'\n______________GCU_GCGC__CAACACCAGG_GA\n______________:||_||||__||||||||||_||\n______________UGA_CGCG__GUUGUGGUCC_CU\n3'-UUU...GCUUA_______________________UUAGA...GUG-5'\n_____________|_______________________|\n_____________87______________________67\n |
288 -- 294 |
70 -- 76 |
-27.7616 kcal/mol |
10.1544 kcal/mol |
7.37523 kcal/mol |
274 298@LB@ | |@LB@5'-UCA...AGCGC G AG C UUA-3'@LB@ GCU GCGC CAACACCAGG GA@LB@ :|| |||| |||||||||| ||@LB@ UGA CGCG GUUGUGGUCC CU@LB@3'-UUU...GCUUA UUAGA...GUG-5'@LB@ | |@LB@ 87 67@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -27.7616 kcal/mol@LB@Unfolding Energy - mRNA 10.1544 kcal/mol@LB@Unfolding Energy - sRNA 7.37523 kcal/mol@LB@@LB@Position - mRNA 275 -- 297@LB@Position - sRNA 68 -- 86@LB@Position Seed - mRNA 288 -- 294@LB@Position Seed - sRNA 70 -- 76@LB@ |
| 123 |
0.00672 |
0.1913 |
b0882 |
clpA |
-10.14 |
0.130927 |
50 -- 58 |
66 -- 74 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________49________59\n_____________|_________|\n5'-UUU...CACUA_________GGCCA...CGC-3'\n______________CCAGGGGAA\n______________||||||:||\n______________GGUCCCUUU\n3'-UUU...GUUGU_________AGAAC...GUG-5'\n_____________|_________|\n_____________75________65\n |
52 -- 58 |
66 -- 72 |
-13.8898 kcal/mol |
0.70189 kcal/mol |
3.04768 kcal/mol |
49 59@LB@ | |@LB@5'-UUU...CACUA GGCCA...CGC-3'@LB@ CCAGGGGAA@LB@ ||||||:||@LB@ GGUCCCUUU@LB@3'-UUU...GUUGU AGAAC...GUG-5'@LB@ | |@LB@ 75 65@LB@@LB@@LB@Energy -10.14 kcal/mol@LB@Hybridization Energy -13.8898 kcal/mol@LB@Unfolding Energy - mRNA 0.70189 kcal/mol@LB@Unfolding Energy - sRNA 3.04768 kcal/mol@LB@@LB@Position - mRNA 50 -- 58@LB@Position - sRNA 66 -- 74@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 124 |
0.006738 |
0.1913 |
b2533 |
suhB |
-10.44 |
0.114821 |
158 -- 166 |
51 -- 59 |
inositol monophosphatase |
|
_____________157_______167\n_____________|_________|\n5'-UUG...AUACU_________UUUCC...AGA-3'\n______________CUGCGCCGU\n______________|||||||||\n______________GACGCGGCA\n3'-UUU...GAACC_________UUUAA...GUG-5'\n_____________|_________|\n_____________60________50\n |
160 -- 166 |
51 -- 57 |
-17.2912 kcal/mol |
2.02049 kcal/mol |
4.83013 kcal/mol |
157 167@LB@ | |@LB@5'-UUG...AUACU UUUCC...AGA-3'@LB@ CUGCGCCGU@LB@ |||||||||@LB@ GACGCGGCA@LB@3'-UUU...GAACC UUUAA...GUG-5'@LB@ | |@LB@ 60 50@LB@@LB@@LB@Energy -10.44 kcal/mol@LB@Hybridization Energy -17.2912 kcal/mol@LB@Unfolding Energy - mRNA 2.02049 kcal/mol@LB@Unfolding Energy - sRNA 4.83013 kcal/mol@LB@@LB@Position - mRNA 158 -- 166@LB@Position - sRNA 51 -- 59@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 51 -- 57@LB@ |
| 126 |
0.006849 |
0.1914 |
b2930 |
yggF |
-13.28 |
0.032133 |
176 -- 191 |
68 -- 83 |
fructose 1 6 bisphosphatase isozyme |
|
_____________175______________192\n_____________|________________|\n5'-AUC...AUUUG________________GGCCG...GCC-3'\n______________GCGUUGAUAUCGGGGA\n______________|||:::|:|:|:||||\n______________CGCGGUUGUGGUCCCU\n3'-UUU...UAUGA________________UUAGA...GUG-5'\n_____________|________________|\n_____________84_______________67\n |
185 -- 191 |
68 -- 74 |
-24.7766 kcal/mol |
4.1491 kcal/mol |
7.34657 kcal/mol |
175 192@LB@ | |@LB@5'-AUC...AUUUG GGCCG...GCC-3'@LB@ GCGUUGAUAUCGGGGA@LB@ |||:::|:|:|:||||@LB@ CGCGGUUGUGGUCCCU@LB@3'-UUU...UAUGA UUAGA...GUG-5'@LB@ | |@LB@ 84 67@LB@@LB@@LB@Energy -13.28 kcal/mol@LB@Hybridization Energy -24.7766 kcal/mol@LB@Unfolding Energy - mRNA 4.1491 kcal/mol@LB@Unfolding Energy - sRNA 7.34657 kcal/mol@LB@@LB@Position - mRNA 176 -- 191@LB@Position - sRNA 68 -- 83@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 68 -- 74@LB@ |
