| 117 |
0.004938 |
0.1407 |
b2560 |
pgpC |
-11.09 |
0.102961 |
189 -- 233 |
4 -- 51 |
phosphatidylglycerophosphatase C membrane bound |
|
_____________188_________________________________________________234\n_____________|___________________________________________________|\n5'-UCG...GUCCA______UA__________CA__UCACG_____CG_________________GACUU...GCC-3'\n______________GAGGAG__UGGUU__UGG__AC_____AGCGU__UGUGG____UGUUUUUU\n______________:|||||__|||||__|||__||_____|||:|__|:|||____|||||||:\n______________UUCCUC__ACCAA__ACC__UG_____UCGUA__AUACC____ACAAAAAG\n3'-UUU...UCCGA______C______GG___A___UCGA______AA_____CAAU________UCG-5'\n_____________|___________________________________________________|\n_____________52__________________________________________________3\n |
227 -- 233 |
4 -- 10 |
-30.0966 kcal/mol |
14.318 kcal/mol |
4.69283 kcal/mol |
188 234@LB@ | |@LB@5'-UCG...GUCCA UA CA UCACG CG GACUU...GCC-3'@LB@ GAGGAG UGGUU UGG AC AGCGU UGUGG UGUUUUUU@LB@ :||||| ||||| ||| || |||:| |:||| |||||||:@LB@ UUCCUC ACCAA ACC UG UCGUA AUACC ACAAAAAG@LB@3'-UUU...UCCGA C GG A UCGA AA CAAU UCG-5'@LB@ | |@LB@ 52 3@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -30.0966 kcal/mol@LB@Unfolding Energy - mRNA 14.318 kcal/mol@LB@Unfolding Energy - sRNA 4.69283 kcal/mol@LB@@LB@Position - mRNA 189 -- 233@LB@Position - sRNA 4 -- 51@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 24 |
0.0003458 |
0.04652 |
b2308 |
hisQ |
-16.60 |
0.003436 |
190 -- 219 |
2 -- 36 |
histidine ABC transporter permease |
|
_____________189___________________________________220\n_____________|_____________________________________|\n5'-GAU...CGACA_______GC_____GUUG___________________GUGUU...UUG-3'\n______________GG_ACAG__AGCAU____UAUGGGUU______UUCAG\n______________||_||||__|||||____||||||||______|||||\n______________CC_UGUC__UCGUA____AUACCCAA______AAGUC\n3'-UUU...AAGGA__A____GA_____AA__________UACAAA_____G-5'\n_____________|_____________________________________|\n_____________37____________________________________1\n |
208 -- 214 |
13 -- 19 |
-26.4576 kcal/mol |
8.3674 kcal/mol |
1.49503 kcal/mol |
189 220@LB@ | |@LB@5'-GAU...CGACA GC GUUG GUGUU...UUG-3'@LB@ GG ACAG AGCAU UAUGGGUU UUCAG@LB@ || |||| ||||| |||||||| |||||@LB@ CC UGUC UCGUA AUACCCAA AAGUC@LB@3'-UUU...AAGGA A GA AA UACAAA G-5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -26.4576 kcal/mol@LB@Unfolding Energy - mRNA 8.3674 kcal/mol@LB@Unfolding Energy - sRNA 1.49503 kcal/mol@LB@@LB@Position - mRNA 190 -- 219@LB@Position - sRNA 2 -- 36@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 25 |
0.0003503 |
0.04652 |
b3233 |
yhcB |
-13.45 |
0.029595 |
190 -- 239 |
1 -- 50 |
DUF1043 family inner membrane-anchored protein |
|
_____________189_______________________________________________________240\n_____________|_________________________________________________________|\n5'-UUU...ACAAC_____AU____CAUGA_____GA___U______UAAU_________GUCG_______AUCAU...CGU-3'\n______________GGGAG___GUU_____CCUGG__AUA_GC__GC______UGGGUUA______UCGGC\n______________:||||___|||_____|||||__|:|_||__||______|||||||______||:||\n______________UCCUC___CAA_____GGACC__UGU_CG__CG______ACCCAAU______AGUCG\n3'-UUU...CCGAU_____CAC_____________A_______AU__UAAAAU_______ACAAAA_____-5'\n_____________|________________________________________________________|\n_____________51_______________________________________________________1\n |
224 -- 230 |
12 -- 18 |
-32.3864 kcal/mol |
14.269 kcal/mol |
4.6634 kcal/mol |
189 240@LB@ | |@LB@5'-UUU...ACAAC AU CAUGA GA U UAAU GUCG AUCAU...CGU-3'@LB@ GGGAG GUU CCUGG AUA GC GC UGGGUUA UCGGC@LB@ :|||| ||| ||||| |:| || || ||||||| ||:||@LB@ UCCUC CAA GGACC UGU CG CG ACCCAAU AGUCG@LB@3'-UUU...CCGAU CAC A AU UAAAAU ACAAAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -13.45 kcal/mol@LB@Hybridization Energy -32.3864 kcal/mol@LB@Unfolding Energy - mRNA 14.269 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 239@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 37 |
0.0006972 |
0.06333 |
b1594 |
mlc |
-9.54 |
0.201866 |
190 -- 226 |
24 -- 50 |
glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
|
_____________189___________________________________227\n_____________|_____________________________________|\n5'-AAA...AUAUA____GUAUGC_______G___AAAAC____CUG____CAUUG...GUA-3'\n______________GGGA______GGUGGUU_CUG_____CAGC___GGCA\n______________:|||______|||||||_|||_____||||___:|||\n______________UCCU______CCACCAA_GAC_____GUCG___UCGU\n3'-UUU...CCGAU_________________G___CAU______A______AAAAU...UCG-5'\n_____________|_____________________________________|\n_____________51____________________________________23\n |
200 -- 206 |
40 -- 46 |
-27.1319 kcal/mol |
12.9802 kcal/mol |
4.6134 kcal/mol |
189 227@LB@ | |@LB@5'-AAA...AUAUA GUAUGC G AAAAC CUG CAUUG...GUA-3'@LB@ GGGA GGUGGUU CUG CAGC GGCA@LB@ :||| ||||||| ||| |||| :|||@LB@ UCCU CCACCAA GAC GUCG UCGU@LB@3'-UUU...CCGAU G CAU A AAAAU...UCG-5'@LB@ | |@LB@ 51 23@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -27.1319 kcal/mol@LB@Unfolding Energy - mRNA 12.9802 kcal/mol@LB@Unfolding Energy - sRNA 4.6134 kcal/mol@LB@@LB@Position - mRNA 190 -- 226@LB@Position - sRNA 24 -- 50@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 95 |
0.003283 |
0.1162 |
b3298 |
rpsM |
-13.37 |
0.031144 |
190 -- 221 |
22 -- 50 |
30S ribosomal subunit protein S13 |
|
_____________189_________________________________222\n_____________|___________________________________|\n5'-GUC...AUAGU_____UGCAUA____C____________A______AACAU...UCC-3'\n______________AGGAG______GUGG__CC__GUAUAGC_GGCAUU\n______________|||||______||||__||__|||:|||_:|||||\n______________UCCUC______CACC__GG__CAUGUCG_UCGUAA\n3'-UUU...CCGAU_______________AA__AC_______A______AAUAC...UCG-5'\n_____________|___________________________________|\n_____________51__________________________________21\n |
208 -- 214 |
29 -- 35 |
-26.0998 kcal/mol |
8.11911 kcal/mol |
4.61397 kcal/mol |
189 222@LB@ | |@LB@5'-GUC...AUAGU UGCAUA C A AACAU...UCC-3'@LB@ AGGAG GUGG CC GUAUAGC GGCAUU@LB@ ||||| |||| || |||:||| :|||||@LB@ UCCUC CACC GG CAUGUCG UCGUAA@LB@3'-UUU...CCGAU AA AC A AAUAC...UCG-5'@LB@ | |@LB@ 51 21@LB@@LB@@LB@Energy -13.37 kcal/mol@LB@Hybridization Energy -26.0998 kcal/mol@LB@Unfolding Energy - mRNA 8.11911 kcal/mol@LB@Unfolding Energy - sRNA 4.61397 kcal/mol@LB@@LB@Position - mRNA 190 -- 221@LB@Position - sRNA 22 -- 50@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 149 |
0.00724 |
0.1633 |
b3494 |
uspB |
-9.24 |
0.227320 |
190 -- 228 |
15 -- 51 |
universal stress (ethanol tolerance) protein B |
|
_____________189_____________________________________229\n_____________|_______________________________________|\n5'-AAU...UCGCC_______A___AUGAUAA___C_GUC_____AUUU____CUUUA...UGC-3'\n______________GGGGAGG_GGU_______GCA_C___GCAUU____UGGG\n______________::|||||_|||_______:||_|___|||||____||||\n______________UUCCUCC_CCA_______UGU_G___CGUAA____ACCC\n3'-UUU...UCCGA_______A___AGGACCA___C_AU______AAU_____AAUAC...UCG-5'\n_____________|_______________________________________|\n_____________52______________________________________14\n |
190 -- 196 |
45 -- 51 |
-24.8188 kcal/mol |
10.9257 kcal/mol |
4.65724 kcal/mol |
189 229@LB@ | |@LB@5'-AAU...UCGCC A AUGAUAA C GUC AUUU CUUUA...UGC-3'@LB@ GGGGAGG GGU GCA C GCAUU UGGG@LB@ ::||||| ||| :|| | ||||| ||||@LB@ UUCCUCC CCA UGU G CGUAA ACCC@LB@3'-UUU...UCCGA A AGGACCA C AU AAU AAUAC...UCG-5'@LB@ | |@LB@ 52 14@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -24.8188 kcal/mol@LB@Unfolding Energy - mRNA 10.9257 kcal/mol@LB@Unfolding Energy - sRNA 4.65724 kcal/mol@LB@@LB@Position - mRNA 190 -- 228@LB@Position - sRNA 15 -- 51@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 150 |
0.00729 |
0.1634 |
b3184 |
yhbE |
-11.29 |
0.093352 |
190 -- 235 |
1 -- 50 |
EamA family inner membrane putative transporter |
|
_____________189_________________________________________________236\n_____________|___________________________________________________|\n5'-AAG...UUGCA____AUAC___A____AA_____A____GGCAU___CAUUC__________GCUCA...UGG-3'\n______________GGGA____GGU___UG__GCAGC_GGCA_____UGG________UUUUGGC\n______________:|||____|||___||__:||||_:|||_____|||________|||::||\n______________UCCU____CCA___AC__UGUCG_UCGU_____ACC________AAAGUCG\n3'-UUU...CCGAU____CCA____AGG__CA_____A____AAAAU___CAAUACAA_______-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-25.8939 kcal/mol |
9.93833 kcal/mol |
4.6634 kcal/mol |
189 236@LB@ | |@LB@5'-AAG...UUGCA AUAC A AA A GGCAU CAUUC GCUCA...UGG-3'@LB@ GGGA GGU UG GCAGC GGCA UGG UUUUGGC@LB@ :||| ||| || :|||| :||| ||| |||::||@LB@ UCCU CCA AC UGUCG UCGU ACC AAAGUCG@LB@3'-UUU...CCGAU CCA AGG CA A AAAAU CAAUACAA -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -11.29 kcal/mol@LB@Hybridization Energy -25.8939 kcal/mol@LB@Unfolding Energy - mRNA 9.93833 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 190 -- 235@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 78 |
0.002256 |
0.09621 |
b0509 |
glxR |
-14.00 |
0.021344 |
191 -- 236 |
14 -- 48 |
tartronate semialdehyde reductase NADH-dependent |
b3882 b3125 |
_____________190______________________________________________237\n_____________|________________________________________________|\n5'-AGG...UAAAA_____UAAUUAUGAAA____GAUUUAU_____UA______________ACACC...CGG-3'\n______________GAGGU___________CUGG_______UGGCU__GGCAU__UAUGGGU\n______________|||||___________||||_______::|||__:||||__|||||||\n______________CUCCA___________GACC_______GUCGA__UCGUA__AUACCCA\n3'-UUU...GAUUC_____CCAAG__________AU_________________AA_______AUACA...UCG-5'\n_____________|________________________________________________|\n_____________49_______________________________________________13\n |
230 -- 236 |
14 -- 20 |
-26.1649 kcal/mol |
7.59311 kcal/mol |
4.57384 kcal/mol |
190 237@LB@ | |@LB@5'-AGG...UAAAA UAAUUAUGAAA GAUUUAU UA ACACC...CGG-3'@LB@ GAGGU CUGG UGGCU GGCAU UAUGGGU@LB@ ||||| |||| ::||| :|||| |||||||@LB@ CUCCA GACC GUCGA UCGUA AUACCCA@LB@3'-UUU...GAUUC CCAAG AU AA AUACA...UCG-5'@LB@ | |@LB@ 49 13@LB@@LB@@LB@Energy -14.00 kcal/mol@LB@Hybridization Energy -26.1649 kcal/mol@LB@Unfolding Energy - mRNA 7.59311 kcal/mol@LB@Unfolding Energy - sRNA 4.57384 kcal/mol@LB@@LB@Position - mRNA 191 -- 236@LB@Position - sRNA 14 -- 48@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 124 |
0.00526 |
0.1416 |
b3170 |
rimP |
-10.72 |
0.121991 |
191 -- 217 |
24 -- 49 |
ribosome maturation factor for 30S subunits |
|
_____________190__________________________218\n_____________|____________________________|\n5'-CUU...GUCUU________G_____UCC___UUAG____AAAAU...CAU-3'\n______________GGGGGUGG__CUUG___ACA____AGCA\n______________||:|||||__|:||___|||____||||\n______________CCUCCACC__GGAC___UGU____UCGU\n3'-UUU...CGAUU________AA____CA____CGA_____AAAAU...UCG-5'\n_____________|____________________________|\n_____________50___________________________23\n |
192 -- 198 |
42 -- 48 |
-23.9554 kcal/mol |
8.6777 kcal/mol |
4.5591 kcal/mol |
190 218@LB@ | |@LB@5'-CUU...GUCUU G UCC UUAG AAAAU...CAU-3'@LB@ GGGGGUGG CUUG ACA AGCA@LB@ ||:||||| |:|| ||| ||||@LB@ CCUCCACC GGAC UGU UCGU@LB@3'-UUU...CGAUU AA CA CGA AAAAU...UCG-5'@LB@ | |@LB@ 50 23@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -23.9554 kcal/mol@LB@Unfolding Energy - mRNA 8.6777 kcal/mol@LB@Unfolding Energy - sRNA 4.5591 kcal/mol@LB@@LB@Position - mRNA 191 -- 217@LB@Position - sRNA 24 -- 49@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 151 |
0.007423 |
0.1652 |
b2895 |
fldB |
-9.53 |
0.202764 |
191 -- 224 |
1 -- 31 |
flavodoxin 2 |
|
_____________190__________________________________225\n_____________|____________________________________|\n5'-CGG...CGAGA____UA____AUGAA_______CU_______A____UCCAG...AUA-3'\n______________AGCU__CGUU_____UAUGGGU____UUUUU_CGGU\n______________||||__|:||_____|||||||____|||||_|:|:\n______________UCGA__GUAA_____AUACCCA____AAAAA_GUCG\n3'-UUU...CCAUG____UC____A___________AUAC__________-5'\n_____________|___________________________________|\n_____________32__________________________________1\n |
206 -- 212 |
14 -- 20 |
-17.4845 kcal/mol |
6.4701 kcal/mol |
1.48722 kcal/mol |
190 225@LB@ | |@LB@5'-CGG...CGAGA UA AUGAA CU A UCCAG...AUA-3'@LB@ AGCU CGUU UAUGGGU UUUUU CGGU@LB@ |||| |:|| ||||||| ||||| |:|:@LB@ UCGA GUAA AUACCCA AAAAA GUCG@LB@3'-UUU...CCAUG UC A AUAC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -9.53 kcal/mol@LB@Hybridization Energy -17.4845 kcal/mol@LB@Unfolding Energy - mRNA 6.4701 kcal/mol@LB@Unfolding Energy - sRNA 1.48722 kcal/mol@LB@@LB@Position - mRNA 191 -- 224@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 14 -- 20@LB@ |
