159 |
0.01739 |
0.3504 |
b2426 |
ucpA |
-8.50 |
0.043854 |
215 -- 229 |
36 -- 49 |
furfural resistance protein putative short-chain oxidoreductase |
|
_____________214_____________230\n_____________|_______________|\n5'-GUG...CUCAC________C______GAUUA...UAA-3'\n______________GGGCAAGA_AGCACU\n______________::||||||_||||||\n______________UUCGUUCU_UCGUGA\n3'-UUU...ACGAA_______________AUUUU...CAA-5'\n_____________|_______________|\n_____________50______________35\n |
216 -- 222 |
42 -- 48 |
-19.0239 kcal/mol |
4.4828 kcal/mol |
6.03645 kcal/mol |
214 230@LB@ | |@LB@5'-GUG...CUCAC C GAUUA...UAA-3'@LB@ GGGCAAGA AGCACU@LB@ ::|||||| ||||||@LB@ UUCGUUCU UCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -8.50 kcal/mol@LB@Hybridization Energy -19.0239 kcal/mol@LB@Unfolding Energy - mRNA 4.4828 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 215 -- 229@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 42 -- 48@LB@ |
133 |
0.0127 |
0.3077 |
b2452 |
eutH |
-4.80 |
0.352106 |
186 -- 194 |
38 -- 46 |
ethanolamine transporter |
|
_____________185_______195\n_____________|_________|\n5'-UUG...ACUAA_________AAGGC...UCC-3'\n______________CAGGGAGUA\n______________||:|:||:|\n______________GUUCUUCGU\n3'-UUU...AAUUC_________GAAUU...CAA-5'\n_____________|_________|\n_____________47________37\n |
188 -- 194 |
38 -- 44 |
-8.62764 kcal/mol |
1.2009 kcal/mol |
2.62609 kcal/mol |
185 195@LB@ | |@LB@5'-UUG...ACUAA AAGGC...UCC-3'@LB@ CAGGGAGUA@LB@ ||:|:||:|@LB@ GUUCUUCGU@LB@3'-UUU...AAUUC GAAUU...CAA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -4.80 kcal/mol@LB@Hybridization Energy -8.62764 kcal/mol@LB@Unfolding Energy - mRNA 1.2009 kcal/mol@LB@Unfolding Energy - sRNA 2.62609 kcal/mol@LB@@LB@Position - mRNA 186 -- 194@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 38 -- 44@LB@ |
112 |
0.009574 |
0.2693 |
b2494 |
bepA |
-6.13 |
0.179960 |
208 -- 220 |
29 -- 41 |
OM protein maintenance and assembly metalloprotease and chaperone periplasmic |
|
_____________207___________221\n_____________|_____________|\n5'-UGA...GUUCA____G________AAACC...UGC-3'\n______________GGCA_UUGAAAAA\n______________:|||_||:|||||\n______________UCGU_AAUUUUUU\n3'-UUU...GUUCU____G________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
214 -- 220 |
29 -- 35 |
-11.3192 kcal/mol |
3.5632 kcal/mol |
1.62306 kcal/mol |
207 221@LB@ | |@LB@5'-UGA...GUUCA G AAACC...UGC-3'@LB@ GGCA UUGAAAAA@LB@ :||| ||:|||||@LB@ UCGU AAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -6.13 kcal/mol@LB@Hybridization Energy -11.3192 kcal/mol@LB@Unfolding Energy - mRNA 3.5632 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 208 -- 220@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 29 -- 35@LB@ |
171 |
0.01957 |
0.3668 |
b2498 |
upp |
-5.84 |
0.210430 |
244 -- 265 |
42 -- 61 |
uracil phosphoribosyltransferase |
|
_____________243____________________266\n_____________|______________________|\n5'-GGC...CAAGC_______GA___G_________UAUCA...CCG-3'\n______________UGGGACU__UGC_UGAGCAAGA\n______________||::|||__|||_|:|||||||\n______________ACUUUGA__ACG_AUUCGUUCU\n3'-UUU...GCCCU____________A_________UCGUG...CAA-5'\n_____________|______________________|\n_____________62_____________________41\n |
259 -- 265 |
42 -- 48 |
-21.1169 kcal/mol |
8.03919 kcal/mol |
7.23689 kcal/mol |
243 266@LB@ | |@LB@5'-GGC...CAAGC GA G UAUCA...CCG-3'@LB@ UGGGACU UGC UGAGCAAGA@LB@ ||::||| ||| |:|||||||@LB@ ACUUUGA ACG AUUCGUUCU@LB@3'-UUU...GCCCU A UCGUG...CAA-5'@LB@ | |@LB@ 62 41@LB@@LB@@LB@Energy -5.84 kcal/mol@LB@Hybridization Energy -21.1169 kcal/mol@LB@Unfolding Energy - mRNA 8.03919 kcal/mol@LB@Unfolding Energy - sRNA 7.23689 kcal/mol@LB@@LB@Position - mRNA 244 -- 265@LB@Position - sRNA 42 -- 61@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 42 -- 48@LB@ |
56 |
0.002803 |
0.1597 |
b2514 |
hisS |
-5.93 |
0.201249 |
279 -- 295 |
24 -- 41 |
histidyl tRNA synthetase |
|
_____________278_________________296\n_____________|___________________|\n5'-AUG...UUGAA_____AC____________GCUCG-3'\n______________GGCAC__UGAAAAA__CGU\n______________:||||__|:|||||__|||\n______________UCGUG__AUUUUUU__GCA\n3'-UUU...GUUCU_____A________AA___AUGUG...CAA-5'\n_____________|___________________|\n_____________42__________________23\n |
286 -- 292 |
29 -- 35 |
-10.1195 kcal/mol |
2.54562 kcal/mol |
1.64881 kcal/mol |
278 296@LB@ | |@LB@5'-AUG...UUGAA AC GCUCG-3'@LB@ GGCAC UGAAAAA CGU@LB@ :|||| |:||||| |||@LB@ UCGUG AUUUUUU GCA@LB@3'-UUU...GUUCU A AA AUGUG...CAA-5'@LB@ | |@LB@ 42 23@LB@@LB@@LB@Energy -5.93 kcal/mol@LB@Hybridization Energy -10.1195 kcal/mol@LB@Unfolding Energy - mRNA 2.54562 kcal/mol@LB@Unfolding Energy - sRNA 1.64881 kcal/mol@LB@@LB@Position - mRNA 279 -- 295@LB@Position - sRNA 24 -- 41@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 29 -- 35@LB@ |
132 |
0.01257 |
0.3067 |
b2516 |
rodZ |
-8.98 |
0.032240 |
231 -- 240 |
34 -- 43 |
MreB assembly cytoskeletal protein |
|
_____________230________241\n_____________|__________|\n5'-UAA...AAAAU__________CUACC...UUG-3'\n______________GAAGCACUUA\n______________||||||||||\n______________CUUCGUGAAU\n3'-UUU...UCGUU__________UUUUU...CAA-5'\n_____________|__________|\n_____________44_________33\n |
234 -- 240 |
34 -- 40 |
-13.7965 kcal/mol |
1.10051 kcal/mol |
3.71643 kcal/mol |
230 241@LB@ | |@LB@5'-UAA...AAAAU CUACC...UUG-3'@LB@ GAAGCACUUA@LB@ ||||||||||@LB@ CUUCGUGAAU@LB@3'-UUU...UCGUU UUUUU...CAA-5'@LB@ | |@LB@ 44 33@LB@@LB@@LB@Energy -8.98 kcal/mol@LB@Hybridization Energy -13.7965 kcal/mol@LB@Unfolding Energy - mRNA 1.10051 kcal/mol@LB@Unfolding Energy - sRNA 3.71643 kcal/mol@LB@@LB@Position - mRNA 231 -- 240@LB@Position - sRNA 34 -- 43@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 34 -- 40@LB@ |
24 |
0.000694 |
0.09021 |
b2531 |
iscR |
-7.21 |
0.097486 |
53 -- 65 |
27 -- 41 |
isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor |
|
_____________52______________66\n_____________|_______________|\n5'-AUG...AAAAU_______________AAAUA...AAC-3'\n______________GGCACU__GAAGGUU\n______________:|||||__:||::||\n______________UCGUGA__UUUUUAA\n3'-UUU...GUUCU______AU_______GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
59 -- 65 |
27 -- 33 |
-10.1429 kcal/mol |
1.29 kcal/mol |
1.6427 kcal/mol |
52 66@LB@ | |@LB@5'-AUG...AAAAU AAAUA...AAC-3'@LB@ GGCACU GAAGGUU@LB@ :||||| :||::||@LB@ UCGUGA UUUUUAA@LB@3'-UUU...GUUCU AU GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -7.21 kcal/mol@LB@Hybridization Energy -10.1429 kcal/mol@LB@Unfolding Energy - mRNA 1.29 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 53 -- 65@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 27 -- 33@LB@ |
28 |
0.0008326 |
0.09021 |
b2563 |
acpS |
-7.40 |
0.086911 |
170 -- 193 |
37 -- 61 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________169_______________________194\n_____________|_________________________|\n5'-GCC...AGAAA______GU___GAU__U________GUGGC...GCG-3'\n______________UGAAGC___CU___GC_GGAAGCGC\n______________||||:|___||___||_:|||||:|\n______________ACUUUG___GA___CG_UCUUCGUG\n3'-UUU...GCCCU______AAC__AUU__U________AAUUU...CAA-5'\n_____________|_________________________|\n_____________62________________________36\n |
187 -- 193 |
37 -- 43 |
-21.5547 kcal/mol |
6.80255 kcal/mol |
7.3495 kcal/mol |
169 194@LB@ | |@LB@5'-GCC...AGAAA GU GAU U GUGGC...GCG-3'@LB@ UGAAGC CU GC GGAAGCGC@LB@ ||||:| || || :|||||:|@LB@ ACUUUG GA CG UCUUCGUG@LB@3'-UUU...GCCCU AAC AUU U AAUUU...CAA-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -7.40 kcal/mol@LB@Hybridization Energy -21.5547 kcal/mol@LB@Unfolding Energy - mRNA 6.80255 kcal/mol@LB@Unfolding Energy - sRNA 7.3495 kcal/mol@LB@@LB@Position - mRNA 170 -- 193@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 37 -- 43@LB@ |
36 |
0.001384 |
0.121 |
b2573 |
rpoE |
-5.96 |
0.197133 |
163 -- 178 |
25 -- 41 |
RNA polymerase sigma E factor |
|
_____________162_______________179\n_____________|_________________|\n5'-ACA...UCGAU_____GU__________GUUUG...UGG-3'\n______________AGCGC___GGAAAUUUG\n______________|||:|___::|||||:|\n______________UCGUG___UUUUUAAGC\n3'-UUU...GUUCU_____AAU_________AAUGU...CAA-5'\n_____________|_________________|\n_____________42________________24\n |
172 -- 178 |
25 -- 31 |
-12.5895 kcal/mol |
4.97735 kcal/mol |
1.64839 kcal/mol |
162 179@LB@ | |@LB@5'-ACA...UCGAU GU GUUUG...UGG-3'@LB@ AGCGC GGAAAUUUG@LB@ |||:| ::|||||:|@LB@ UCGUG UUUUUAAGC@LB@3'-UUU...GUUCU AAU AAUGU...CAA-5'@LB@ | |@LB@ 42 24@LB@@LB@@LB@Energy -5.96 kcal/mol@LB@Hybridization Energy -12.5895 kcal/mol@LB@Unfolding Energy - mRNA 4.97735 kcal/mol@LB@Unfolding Energy - sRNA 1.64839 kcal/mol@LB@@LB@Position - mRNA 163 -- 178@LB@Position - sRNA 25 -- 41@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 25 -- 31@LB@ |
154 |
0.01606 |
0.3359 |
b2587 |
kgtP |
-4.55 |
0.394910 |
6 -- 12 |
52 -- 58 |
alpha-ketoglutarate transporter |
|
_____________5_______13\n_____________|_______|\n______5'-UCCCC_______CCACU...UCG-3'\n______________AACUUGC\n______________|||||||\n______________UUGAACG\n3'-UUU...CUACU_______AAUUC...CAA-5'\n_____________|_______|\n_____________59______51\n |
6 -- 12 |
52 -- 58 |
-7.82918 kcal/mol |
0.15004 kcal/mol |
3.13411 kcal/mol |
5 13@LB@ | |@LB@ 5'-UCCCC CCACU...UCG-3'@LB@ AACUUGC@LB@ |||||||@LB@ UUGAACG@LB@3'-UUU...CUACU AAUUC...CAA-5'@LB@ | |@LB@ 59 51@LB@@LB@@LB@Energy -4.55 kcal/mol@LB@Hybridization Energy -7.82918 kcal/mol@LB@Unfolding Energy - mRNA 0.15004 kcal/mol@LB@Unfolding Energy - sRNA 3.13411 kcal/mol@LB@@LB@Position - mRNA 6 -- 12@LB@Position - sRNA 52 -- 58@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 52 -- 58@LB@ |