| 111 |
0.01184 |
0.3513 |
b0528 |
ybcJ |
-13.49 |
0.050278 |
257 -- 272 |
44 -- 61 |
ribosome-associated protein; putative RNA-binding protein |
|
_____________256________________273\n_____________|__________________|\n5'-AGG...CUGAA________GC________GAAAG...CGA-3'\n______________ACUGGAAG___UG_GAGC\n______________||||||||___||_||||\n______________UGACCUUC___AC_CUCG\n3'-UUU...CAUUA________GUU__A____UUACA...GCG-5'\n_____________|__________________|\n_____________62_________________43\n |
258 -- 264 |
54 -- 60 |
-19.8617 kcal/mol |
3.07726 kcal/mol |
3.29941 kcal/mol |
256 273@LB@ | |@LB@5'-AGG...CUGAA GC GAAAG...CGA-3'@LB@ ACUGGAAG UG GAGC@LB@ |||||||| || ||||@LB@ UGACCUUC AC CUCG@LB@3'-UUU...CAUUA GUU A UUACA...GCG-5'@LB@ | |@LB@ 62 43@LB@@LB@@LB@Energy -13.49 kcal/mol@LB@Hybridization Energy -19.8617 kcal/mol@LB@Unfolding Energy - mRNA 3.07726 kcal/mol@LB@Unfolding Energy - sRNA 3.29941 kcal/mol@LB@@LB@Position - mRNA 257 -- 272@LB@Position - sRNA 44 -- 61@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 54 -- 60@LB@ |
| 112 |
0.01186 |
0.3513 |
b2021 |
hisC |
-13.06 |
0.059267 |
35 -- 113 |
9 -- 85 |
histidinol-phosphate aminotransferase |
|
_____________34___________________________________________________________________________________114\n_____________|____________________________________________________________________________________|\n5'-GUU...CUGUU_____C__G___________AUUUCCA_______C___ACC_UAC__G__C_____AAAGAG_____________CU_______AACCA...GGC-3'\n______________CCAGC_UC_GGCUGGC__AG________GAAGCG_AUG___G___AG_AA_UGUCG_______GGGUUCUCCGCG__GG_CUUC\n______________|||||_:|_|||||||__||________|||||:_|||___|___||_||_|||||_______:|||||||||||__||_||||\n______________GGUCG_GG_CCGACCG__UC________CUUCGU_UAC___C___UC_UU_ACAGC_______UCCAAGAGGCGC__CC_GAAG\n______3'-UUUUC_____U__G_______AU__AUUAUGAC__________A________G________ACGAAAG____________UC__A____GACUAGCG-5'\n_____________|____________________________________________________________________________________|\n_____________86___________________________________________________________________________________8\n |
99 -- 105 |
18 -- 24 |
-69.7784 kcal/mol |
31.0124 kcal/mol |
25.703 kcal/mol |
34 114@LB@ | |@LB@5'-GUU...CUGUU C G AUUUCCA C ACC UAC G C AAAGAG CU AACCA...GGC-3'@LB@ CCAGC UC GGCUGGC AG GAAGCG AUG G AG AA UGUCG GGGUUCUCCGCG GG CUUC@LB@ ||||| :| ||||||| || |||||: ||| | || || ||||| :||||||||||| || ||||@LB@ GGUCG GG CCGACCG UC CUUCGU UAC C UC UU ACAGC UCCAAGAGGCGC CC GAAG@LB@ 3'-UUUUC U G AU AUUAUGAC A G ACGAAAG UC A GACUAGCG-5'@LB@ | |@LB@ 86 8@LB@@LB@@LB@Energy -13.06 kcal/mol@LB@Hybridization Energy -69.7784 kcal/mol@LB@Unfolding Energy - mRNA 31.0124 kcal/mol@LB@Unfolding Energy - sRNA 25.703 kcal/mol@LB@@LB@Position - mRNA 35 -- 113@LB@Position - sRNA 9 -- 85@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 113 |
0.01187 |
0.3513 |
b2901 |
bglA |
-10.39 |
0.163088 |
124 -- 152 |
36 -- 60 |
6-phospho-beta-glucosidase A |
|
_____________123___________________________153\n_____________|_____________________________|\n5'-UUC...UCAUC______A__U__AAAAAA___________UUGGC...GGC-3'\n______________CUGGAA_CG_UG______AGUGAUGUCGU\n______________||||||_|:_||______||::|||||||\n______________GACCUU_GU_AC______UCGUUACAGCA\n3'-UUU...AUUAU______C__U__AC_______________CGAAA...GCG-5'\n_____________|_____________________________|\n_____________61____________________________35\n |
146 -- 152 |
36 -- 42 |
-20.7652 kcal/mol |
7.06987 kcal/mol |
3.30077 kcal/mol |
123 153@LB@ | |@LB@5'-UUC...UCAUC A U AAAAAA UUGGC...GGC-3'@LB@ CUGGAA CG UG AGUGAUGUCGU@LB@ |||||| |: || ||::|||||||@LB@ GACCUU GU AC UCGUUACAGCA@LB@3'-UUU...AUUAU C U AC CGAAA...GCG-5'@LB@ | |@LB@ 61 35@LB@@LB@@LB@Energy -10.39 kcal/mol@LB@Hybridization Energy -20.7652 kcal/mol@LB@Unfolding Energy - mRNA 7.06987 kcal/mol@LB@Unfolding Energy - sRNA 3.30077 kcal/mol@LB@@LB@Position - mRNA 124 -- 152@LB@Position - sRNA 36 -- 60@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 114 |
0.01202 |
0.3513 |
b4348 |
hsdS |
-14.85 |
0.029459 |
128 -- 148 |
40 -- 66 |
specificity determinant for hsdM and hsdR |
|
_____________127_________________________149\n_____________|___________________________|\n5'-CUG...GAUGC___________________________AGGCC...UAA-3'\n______________GUGA_ACUGGGGGC_____GAGCGAUG\n______________||:|_|||||::||_____||||:|||\n______________CAUU_UGACCUUCG_____CUCGUUAC\n3'-UUU...CGAUU____A_________UUACA________AGCAC...GCG-5'\n_____________|___________________________|\n_____________67__________________________39\n |
142 -- 148 |
40 -- 46 |
-25.5951 kcal/mol |
7.44461 kcal/mol |
3.30497 kcal/mol |
127 149@LB@ | |@LB@5'-CUG...GAUGC AGGCC...UAA-3'@LB@ GUGA ACUGGGGGC GAGCGAUG@LB@ ||:| |||||::|| ||||:|||@LB@ CAUU UGACCUUCG CUCGUUAC@LB@3'-UUU...CGAUU A UUACA AGCAC...GCG-5'@LB@ | |@LB@ 67 39@LB@@LB@@LB@Energy -14.85 kcal/mol@LB@Hybridization Energy -25.5951 kcal/mol@LB@Unfolding Energy - mRNA 7.44461 kcal/mol@LB@Unfolding Energy - sRNA 3.30497 kcal/mol@LB@@LB@Position - mRNA 128 -- 148@LB@Position - sRNA 40 -- 66@LB@Position Seed - mRNA 142 -- 148@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 115 |
0.01202 |
0.3513 |
b1881 |
cheZ |
-13.42 |
0.051545 |
178 -- 197 |
37 -- 61 |
chemotaxis regulator protein phosphatase for CheY |
|
_____________177_______________________198\n_____________|_________________________|\n5'-AUU...GAGAA_________________________ACUAU...GGG-3'\n______________ACUGG__GC_AUGUGAG_GAUG_CG\n______________|||||__||_|||||||_:|||_||\n______________UGACC__CG_UACACUC_UUAC_GC\n3'-UUU...CAUUA_____UU__U_______G____A__ACGAA...GCG-5'\n_____________|_________________________|\n_____________62________________________36\n |
185 -- 191 |
45 -- 51 |
-22.2356 kcal/mol |
5.51256 kcal/mol |
3.30158 kcal/mol |
177 198@LB@ | |@LB@5'-AUU...GAGAA ACUAU...GGG-3'@LB@ ACUGG GC AUGUGAG GAUG CG@LB@ ||||| || ||||||| :||| ||@LB@ UGACC CG UACACUC UUAC GC@LB@3'-UUU...CAUUA UU U G A ACGAA...GCG-5'@LB@ | |@LB@ 62 36@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -22.2356 kcal/mol@LB@Unfolding Energy - mRNA 5.51256 kcal/mol@LB@Unfolding Energy - sRNA 3.30158 kcal/mol@LB@@LB@Position - mRNA 178 -- 197@LB@Position - sRNA 37 -- 61@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 116 |
0.01242 |
0.3585 |
b0468 |
ybaN |
-14.97 |
0.028033 |
230 -- 260 |
44 -- 78 |
DUF454 family inner membrane protein |
|
_____________229___________________________________261\n_____________|_____________________________________|\n5'-GUC...AUUGG_______________________UAC___________GUGGU...UGC-3'\n______________CUGGCUGGC__GGUAGUGCUGGG___GC____UGGGC\n______________|:|||||||__:|||:|:||||:___||____||:||\n______________GGCCGACCG__UCAUUAUGACCU___CG____ACUCG\n3'-UUU...UCGUG_________AU____________U____UUAC_____UUACA...GCG-5'\n_____________|_____________________________________|\n_____________79____________________________________43\n |
244 -- 250 |
56 -- 62 |
-40.2392 kcal/mol |
12.5705 kcal/mol |
12.6976 kcal/mol |
229 261@LB@ | |@LB@5'-GUC...AUUGG UAC GUGGU...UGC-3'@LB@ CUGGCUGGC GGUAGUGCUGGG GC UGGGC@LB@ |:||||||| :|||:|:||||: || ||:||@LB@ GGCCGACCG UCAUUAUGACCU CG ACUCG@LB@3'-UUU...UCGUG AU U UUAC UUACA...GCG-5'@LB@ | |@LB@ 79 43@LB@@LB@@LB@Energy -14.97 kcal/mol@LB@Hybridization Energy -40.2392 kcal/mol@LB@Unfolding Energy - mRNA 12.5705 kcal/mol@LB@Unfolding Energy - sRNA 12.6976 kcal/mol@LB@@LB@Position - mRNA 230 -- 260@LB@Position - sRNA 44 -- 78@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 117 |
0.0126 |
0.3585 |
b2200 |
ccmB |
-15.87 |
0.019639 |
270 -- 292 |
1 -- 22 |
heme export ABC transporter permease |
|
_____________269_____________________293\n_____________|_______________________|\n5'-CGU...CCAAC____U_U__U_____________AAUUACCC-3'\n______________CCGC_G_GG_UCUUCCUGAUUGU\n______________||||_|_||_||||||||||:|:\n______________GGCG_C_CC_AGAAGGACUAGCG\n3'-UUU...CAAGA______U__C_____________-5'\n_____________|______________________|\n_____________23_____________________1\n |
286 -- 292 |
1 -- 7 |
-31.2771 kcal/mol |
7.85543 kcal/mol |
7.55214 kcal/mol |
269 293@LB@ | |@LB@5'-CGU...CCAAC U U U AAUUACCC-3'@LB@ CCGC G GG UCUUCCUGAUUGU@LB@ |||| | || ||||||||||:|:@LB@ GGCG C CC AGAAGGACUAGCG@LB@3'-UUU...CAAGA U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -15.87 kcal/mol@LB@Hybridization Energy -31.2771 kcal/mol@LB@Unfolding Energy - mRNA 7.85543 kcal/mol@LB@Unfolding Energy - sRNA 7.55214 kcal/mol@LB@@LB@Position - mRNA 270 -- 292@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 286 -- 292@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 118 |
0.01263 |
0.3585 |
b0890 |
ftsK |
-8.12 |
0.357469 |
20 -- 46 |
38 -- 59 |
DNA translocase at septal ring sorting daughter chromsomes |
|
_____________19__________________________47\n_____________|___________________________|\n5'-ACA...UGUUA______AAGU___GCA_______C___UGGUU...UUG-3'\n______________UGGAAG____CAA___GAGUAAU_GUC\n______________||||||____|||___|||:|||_|||\n______________ACCUUC____GUU___CUCGUUA_CAG\n3'-UUU...UUAUG_____________ACA___________CACGA...GCG-5'\n_____________|___________________________|\n_____________60__________________________37\n |
36 -- 42 |
41 -- 47 |
-18.6025 kcal/mol |
7.19996 kcal/mol |
3.27871 kcal/mol |
19 47@LB@ | |@LB@5'-ACA...UGUUA AAGU GCA C UGGUU...UUG-3'@LB@ UGGAAG CAA GAGUAAU GUC@LB@ |||||| ||| |||:||| |||@LB@ ACCUUC GUU CUCGUUA CAG@LB@3'-UUU...UUAUG ACA CACGA...GCG-5'@LB@ | |@LB@ 60 37@LB@@LB@@LB@Energy -8.12 kcal/mol@LB@Hybridization Energy -18.6025 kcal/mol@LB@Unfolding Energy - mRNA 7.19996 kcal/mol@LB@Unfolding Energy - sRNA 3.27871 kcal/mol@LB@@LB@Position - mRNA 20 -- 46@LB@Position - sRNA 38 -- 59@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 119 |
0.01272 |
0.3585 |
b4336 |
yjiN |
-16.20 |
0.017192 |
123 -- 159 |
40 -- 86 |
zinc-type alcohol dehydrogenase-like protein |
|
_____________122_____________________________________________160\n_____________|_______________________________________________|\n5'-GGU...CGUGC_________A___A___C___C____G____________________AUUUU...CCA-3'\n______________GCCAGCAUC_GGC__GC_GAG___UA_UGGAG_______GAGCAGUG\n______________|||||||:|_|||__||_:||___||_||||:_______|||||:||\n______________CGGUCGUGG_CCG__CG_UUC___AU_ACCUU_______CUCGUUAC\n_______3'-UUUU_________G___AC__A___AUU__G_____CGUUACA________AGCAC...GCG-5'\n_____________|_______________________________________________|\n_____________87______________________________________________39\n |
153 -- 159 |
40 -- 46 |
-42.8122 kcal/mol |
11.6972 kcal/mol |
14.9104 kcal/mol |
122 160@LB@ | |@LB@5'-GGU...CGUGC A A C C G AUUUU...CCA-3'@LB@ GCCAGCAUC GGC GC GAG UA UGGAG GAGCAGUG@LB@ |||||||:| ||| || :|| || ||||: |||||:||@LB@ CGGUCGUGG CCG CG UUC AU ACCUU CUCGUUAC@LB@ 3'-UUUU G AC A AUU G CGUUACA AGCAC...GCG-5'@LB@ | |@LB@ 87 39@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -42.8122 kcal/mol@LB@Unfolding Energy - mRNA 11.6972 kcal/mol@LB@Unfolding Energy - sRNA 14.9104 kcal/mol@LB@@LB@Position - mRNA 123 -- 159@LB@Position - sRNA 40 -- 86@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 120 |
0.0128 |
0.3585 |
b0445 |
ybaE |
-11.02 |
0.129416 |
154 -- 176 |
41 -- 63 |
putative ABC transporter periplasmic binding protein |
|
_____________153______________________177\n_____________|________________________|\n5'-CGU...GAUAU______________A____A____UAAAU...GUU-3'\n______________AUAC_GGAAGUAAU_GUGA_UAGU\n______________||||_|||||:|||_||||_:|:|\n______________UAUG_CCUUCGUUA_CACU_GUUA\n3'-UUU...UUCAU____A______________C____CAGCA...GCG-5'\n_____________|________________________|\n_____________64_______________________40\n |
159 -- 165 |
51 -- 57 |
-19.1991 kcal/mol |
4.87781 kcal/mol |
3.30177 kcal/mol |
153 177@LB@ | |@LB@5'-CGU...GAUAU A A UAAAU...GUU-3'@LB@ AUAC GGAAGUAAU GUGA UAGU@LB@ |||| |||||:||| |||| :|:|@LB@ UAUG CCUUCGUUA CACU GUUA@LB@3'-UUU...UUCAU A C CAGCA...GCG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -11.02 kcal/mol@LB@Hybridization Energy -19.1991 kcal/mol@LB@Unfolding Energy - mRNA 4.87781 kcal/mol@LB@Unfolding Energy - sRNA 3.30177 kcal/mol@LB@@LB@Position - mRNA 154 -- 176@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 159 -- 165@LB@Position Seed - sRNA 51 -- 57@LB@ |
