112 |
0.009574 |
0.2693 |
b2494 |
bepA |
-6.13 |
0.179960 |
208 -- 220 |
29 -- 41 |
OM protein maintenance and assembly metalloprotease and chaperone periplasmic |
|
_____________207___________221\n_____________|_____________|\n5'-UGA...GUUCA____G________AAACC...UGC-3'\n______________GGCA_UUGAAAAA\n______________:|||_||:|||||\n______________UCGU_AAUUUUUU\n3'-UUU...GUUCU____G________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
214 -- 220 |
29 -- 35 |
-11.3192 kcal/mol |
3.5632 kcal/mol |
1.62306 kcal/mol |
207 221@LB@ | |@LB@5'-UGA...GUUCA G AAACC...UGC-3'@LB@ GGCA UUGAAAAA@LB@ :||| ||:|||||@LB@ UCGU AAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -6.13 kcal/mol@LB@Hybridization Energy -11.3192 kcal/mol@LB@Unfolding Energy - mRNA 3.5632 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 208 -- 220@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 29 -- 35@LB@ |
114 |
0.009652 |
0.2693 |
b2614 |
grpE |
-8.47 |
0.044767 |
262 -- 275 |
27 -- 41 |
heat shock protein |
|
_____________261_____________276\n_____________|_______________|\n5'-GAG...GGAUC_____G_________GAGGC...CUG-3'\n______________AGCAC__AAGAGAUU\n______________|||||__||:|:|||\n______________UCGUG__UUUUUUAA\n3'-UUU...GUUCU_____AA________GCAAU...CAA-5'\n_____________|_______________|\n_____________42______________26\n |
269 -- 275 |
27 -- 33 |
-11.1078 kcal/mol |
0.992631 kcal/mol |
1.6427 kcal/mol |
261 276@LB@ | |@LB@5'-GAG...GGAUC G GAGGC...CUG-3'@LB@ AGCAC AAGAGAUU@LB@ ||||| ||:|:|||@LB@ UCGUG UUUUUUAA@LB@3'-UUU...GUUCU AA GCAAU...CAA-5'@LB@ | |@LB@ 42 26@LB@@LB@@LB@Energy -8.47 kcal/mol@LB@Hybridization Energy -11.1078 kcal/mol@LB@Unfolding Energy - mRNA 0.992631 kcal/mol@LB@Unfolding Energy - sRNA 1.6427 kcal/mol@LB@@LB@Position - mRNA 262 -- 275@LB@Position - sRNA 27 -- 41@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 27 -- 33@LB@ |
116 |
0.009699 |
0.2693 |
b2708 |
srlQ |
-8.08 |
0.057211 |
196 -- 214 |
36 -- 49 |
D-arabinose 5-phosphate isomerase |
|
_____________195_________________215\n_____________|___________________|\n5'-UAC...GGAGA______UGAGU________ACUGA...GCG-3'\n______________GAGCAA_____GAAGCACU\n______________:|||||_____||||||||\n______________UUCGUU_____CUUCGUGA\n3'-UUU...ACGAA___________________AUUUU...CAA-5'\n_____________|___________________|\n_____________50__________________35\n |
208 -- 214 |
36 -- 42 |
-17.2491 kcal/mol |
3.12814 kcal/mol |
6.03645 kcal/mol |
195 215@LB@ | |@LB@5'-UAC...GGAGA UGAGU ACUGA...GCG-3'@LB@ GAGCAA GAAGCACU@LB@ :||||| ||||||||@LB@ UUCGUU CUUCGUGA@LB@3'-UUU...ACGAA AUUUU...CAA-5'@LB@ | |@LB@ 50 35@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -17.2491 kcal/mol@LB@Unfolding Energy - mRNA 3.12814 kcal/mol@LB@Unfolding Energy - sRNA 6.03645 kcal/mol@LB@@LB@Position - mRNA 196 -- 214@LB@Position - sRNA 36 -- 49@LB@Position Seed - mRNA 208 -- 214@LB@Position Seed - sRNA 36 -- 42@LB@ |
107 |
0.009263 |
0.2693 |
b3034 |
nudF |
-7.86 |
0.065629 |
202 -- 214 |
42 -- 54 |
ADP-ribose pyrophosphatase |
|
_____________201___________215\n_____________|_____________|\n5'-AUU...AACAA_________C___CAACC...UUU-3'\n______________UGCUUAAGC_AGA\n______________|||||||||_|||\n______________ACGAAUUCG_UCU\n3'-UUU...UUUGA_________U___UCGUG...CAA-5'\n_____________|_____________|\n_____________55____________41\n |
204 -- 210 |
46 -- 52 |
-15.7149 kcal/mol |
1.83586 kcal/mol |
6.01534 kcal/mol |
201 215@LB@ | |@LB@5'-AUU...AACAA C CAACC...UUU-3'@LB@ UGCUUAAGC AGA@LB@ ||||||||| |||@LB@ ACGAAUUCG UCU@LB@3'-UUU...UUUGA U UCGUG...CAA-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -15.7149 kcal/mol@LB@Unfolding Energy - mRNA 1.83586 kcal/mol@LB@Unfolding Energy - sRNA 6.01534 kcal/mol@LB@@LB@Position - mRNA 202 -- 214@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 46 -- 52@LB@ |
113 |
0.009602 |
0.2693 |
b3237 |
argR |
-14.05 |
0.000763 |
205 -- 250 |
27 -- 60 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________204_____________________________________________251\n_____________|_______________________________________________|\n5'-ACA...UAUGC______CG____________AGAACUAGUUAA___________C___ACUUA...UGC-3'\n______________GAAGCU__GC_UAAGCAAGA____________AGCAUUUAAAG_AUU\n______________|||:||__||_|||||||||____________||||:|||||:_|||\n______________CUUUGA__CG_AUUCGUUCU____________UCGUGAAUUUU_UAA\n3'-UUU...CCCUA______A___A________________________________U___GCAAU...CAA-5'\n_____________|_______________________________________________|\n_____________61______________________________________________26\n |
238 -- 244 |
33 -- 39 |
-28.1986 kcal/mol |
7.87477 kcal/mol |
6.27096 kcal/mol |
204 251@LB@ | |@LB@5'-ACA...UAUGC CG AGAACUAGUUAA C ACUUA...UGC-3'@LB@ GAAGCU GC UAAGCAAGA AGCAUUUAAAG AUU@LB@ |||:|| || ||||||||| ||||:|||||: |||@LB@ CUUUGA CG AUUCGUUCU UCGUGAAUUUU UAA@LB@3'-UUU...CCCUA A A U GCAAU...CAA-5'@LB@ | |@LB@ 61 26@LB@@LB@@LB@Energy -14.05 kcal/mol@LB@Hybridization Energy -28.1986 kcal/mol@LB@Unfolding Energy - mRNA 7.87477 kcal/mol@LB@Unfolding Energy - sRNA 6.27096 kcal/mol@LB@@LB@Position - mRNA 205 -- 250@LB@Position - sRNA 27 -- 60@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 33 -- 39@LB@ |
106 |
0.009044 |
0.2693 |
b3360 |
pabA |
-9.65 |
0.020637 |
134 -- 165 |
7 -- 41 |
aminodeoxychorismate synthase subunit II |
|
_____________133_________________________________166\n_____________|___________________________________|\n5'-GCG...UAUUU____AAGUGGUAAG___AA________________GUAAA...CGU-3'\n______________AGCA___________CG____GCCGGGGAAUCUGA\n______________||||___________||____:||:||:|||||||\n______________UCGU___________GC____UGGUCCUUUAGACU\n3'-UUU...GUUCU____GAAUUUUUUAA__AAUG______________ACACAA-5'\n_____________|___________________________________|\n_____________42__________________________________6\n |
156 -- 162 |
10 -- 16 |
-26.3396 kcal/mol |
7.46958 kcal/mol |
9.22092 kcal/mol |
133 166@LB@ | |@LB@5'-GCG...UAUUU AAGUGGUAAG AA GUAAA...CGU-3'@LB@ AGCA CG GCCGGGGAAUCUGA@LB@ |||| || :||:||:|||||||@LB@ UCGU GC UGGUCCUUUAGACU@LB@3'-UUU...GUUCU GAAUUUUUUAA AAUG ACACAA-5'@LB@ | |@LB@ 42 6@LB@@LB@@LB@Energy -9.65 kcal/mol@LB@Hybridization Energy -26.3396 kcal/mol@LB@Unfolding Energy - mRNA 7.46958 kcal/mol@LB@Unfolding Energy - sRNA 9.22092 kcal/mol@LB@@LB@Position - mRNA 134 -- 165@LB@Position - sRNA 7 -- 41@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 10 -- 16@LB@ |
117 |
0.009786 |
0.2694 |
b1706 |
ydiU |
-6.16 |
0.177349 |
6 -- 27 |
36 -- 55 |
UPF0061 family protein |
|
_____________5______________________28\n_____________|______________________|\n______5'-UGCAA____AUCAUU____________GAUAC...AUA-3'\n______________UUGC______GCGGGAGGCAUU\n______________||||______||::||:|||:|\n______________AACG______CGUUCUUCGUGA\n3'-UUU...CUUUG____AAUU______________AUUUU...CAA-5'\n_____________|______________________|\n_____________56_____________________35\n |
21 -- 27 |
36 -- 42 |
-19.2761 kcal/mol |
6.93839 kcal/mol |
6.17795 kcal/mol |
5 28@LB@ | |@LB@ 5'-UGCAA AUCAUU GAUAC...AUA-3'@LB@ UUGC GCGGGAGGCAUU@LB@ |||| ||::||:|||:|@LB@ AACG CGUUCUUCGUGA@LB@3'-UUU...CUUUG AAUU AUUUU...CAA-5'@LB@ | |@LB@ 56 35@LB@@LB@@LB@Energy -6.16 kcal/mol@LB@Hybridization Energy -19.2761 kcal/mol@LB@Unfolding Energy - mRNA 6.93839 kcal/mol@LB@Unfolding Energy - sRNA 6.17795 kcal/mol@LB@@LB@Position - mRNA 6 -- 27@LB@Position - sRNA 36 -- 55@LB@Position Seed - mRNA 21 -- 27@LB@Position Seed - sRNA 36 -- 42@LB@ |
118 |
0.009927 |
0.271 |
b1654 |
grxD |
-11.37 |
0.006167 |
180 -- 241 |
7 -- 60 |
glutaredoxin-4 |
|
_____________179_______________________________________________________________242\n_____________|_________________________________________________________________|\n5'-AAA...GUAAA________AGG________CAAUG_____CACUAUCG_______C_A_________AUUG_____AAACC...CUG-3'\n______________GAAGUUUG___AAGCAAGA_____AGCAC________AAAAAAU_C___ACGCCAG_____CUGA\n______________|||::|||___||||||||_____|||||________|||||||_|___||:||||_____||||\n______________CUUUGAAC___UUCGUUCU_____UCGUG________UUUUUUA_G___UGUGGUC_____GACU\n3'-UUU...CCCUA________GAA__________________AA_____________A_CAA_______CUUUA____ACACAA-5'\n_____________|_________________________________________________________________|\n_____________61________________________________________________________________6\n |
227 -- 233 |
16 -- 22 |
-34.247 kcal/mol |
9.03509 kcal/mol |
13.8468 kcal/mol |
179 242@LB@ | |@LB@5'-AAA...GUAAA AGG CAAUG CACUAUCG C A AUUG AAACC...CUG-3'@LB@ GAAGUUUG AAGCAAGA AGCAC AAAAAAU C ACGCCAG CUGA@LB@ |||::||| |||||||| ||||| ||||||| | ||:|||| ||||@LB@ CUUUGAAC UUCGUUCU UCGUG UUUUUUA G UGUGGUC GACU@LB@3'-UUU...CCCUA GAA AA A CAA CUUUA ACACAA-5'@LB@ | |@LB@ 61 6@LB@@LB@@LB@Energy -11.37 kcal/mol@LB@Hybridization Energy -34.247 kcal/mol@LB@Unfolding Energy - mRNA 9.03509 kcal/mol@LB@Unfolding Energy - sRNA 13.8468 kcal/mol@LB@@LB@Position - mRNA 180 -- 241@LB@Position - sRNA 7 -- 60@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 16 -- 22@LB@ |
119 |
0.01022 |
0.2766 |
b0123 |
cueO |
-7.29 |
0.093095 |
47 -- 59 |
29 -- 41 |
multicopper oxidase (laccase) |
|
_____________46____________60\n_____________|_____________|\n5'-CUG...UACCA__G__________GAUAA...CGU-3'\n______________GG_GCUUAAAGAA\n______________:|_:||||||:||\n______________UC_UGAAUUUUUU\n3'-UUU...GUUCU__G__________AAGCA...CAA-5'\n_____________|_____________|\n_____________42____________28\n |
53 -- 59 |
29 -- 35 |
-11.0144 kcal/mol |
2.10364 kcal/mol |
1.62306 kcal/mol |
46 60@LB@ | |@LB@5'-CUG...UACCA G GAUAA...CGU-3'@LB@ GG GCUUAAAGAA@LB@ :| :||||||:||@LB@ UC UGAAUUUUUU@LB@3'-UUU...GUUCU G AAGCA...CAA-5'@LB@ | |@LB@ 42 28@LB@@LB@@LB@Energy -7.29 kcal/mol@LB@Hybridization Energy -11.0144 kcal/mol@LB@Unfolding Energy - mRNA 2.10364 kcal/mol@LB@Unfolding Energy - sRNA 1.62306 kcal/mol@LB@@LB@Position - mRNA 47 -- 59@LB@Position - sRNA 29 -- 41@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 29 -- 35@LB@ |
120 |
0.01039 |
0.2788 |
b2314 |
dedD |
-6.27 |
0.167184 |
42 -- 54 |
45 -- 58 |
membrane-anchored periplasmic protein involved in septation |
|
_____________41_____________55\n_____________|______________|\n5'-UUG...AGAAC______________UUUGG...AUU-3'\n______________AAC_UGCUUGAGCA\n______________|||_|||||:||||\n______________UUG_ACGAAUUCGU\n3'-UUU...CUACU___A__________UCUUC...CAA-5'\n_____________|______________|\n_____________59_____________44\n |
47 -- 53 |
46 -- 52 |
-15.7533 kcal/mol |
3.46622 kcal/mol |
6.01947 kcal/mol |
41 55@LB@ | |@LB@5'-UUG...AGAAC UUUGG...AUU-3'@LB@ AAC UGCUUGAGCA@LB@ ||| |||||:||||@LB@ UUG ACGAAUUCGU@LB@3'-UUU...CUACU A UCUUC...CAA-5'@LB@ | |@LB@ 59 44@LB@@LB@@LB@Energy -6.27 kcal/mol@LB@Hybridization Energy -15.7533 kcal/mol@LB@Unfolding Energy - mRNA 3.46622 kcal/mol@LB@Unfolding Energy - sRNA 6.01947 kcal/mol@LB@@LB@Position - mRNA 42 -- 54@LB@Position - sRNA 45 -- 58@LB@Position Seed - mRNA 47 -- 53@LB@Position Seed - sRNA 46 -- 52@LB@ |