| 118 |
0.01176 |
0.3326 |
b3601 |
mtlR |
-9.20 |
0.175568 |
190 -- 199 |
44 -- 53 |
mannitol operon repressor |
|
_____________189________200\n_____________|__________|\n5'-UAU...AUAAA__________AAUGG...UUG-3'\n______________GCAAUGCAAU\n______________||||||||||\n______________CGUUACGUUA\n3'-UUU...GUCAC__________CCGGG...UUG-5'\n_____________|__________|\n_____________54_________43\n |
193 -- 199 |
44 -- 50 |
-14.2394 kcal/mol |
1.82821 kcal/mol |
3.20822 kcal/mol |
189 200@LB@ | |@LB@5'-UAU...AUAAA AAUGG...UUG-3'@LB@ GCAAUGCAAU@LB@ ||||||||||@LB@ CGUUACGUUA@LB@3'-UUU...GUCAC CCGGG...UUG-5'@LB@ | |@LB@ 54 43@LB@@LB@@LB@Energy -9.20 kcal/mol@LB@Hybridization Energy -14.2394 kcal/mol@LB@Unfolding Energy - mRNA 1.82821 kcal/mol@LB@Unfolding Energy - sRNA 3.20822 kcal/mol@LB@@LB@Position - mRNA 190 -- 199@LB@Position - sRNA 44 -- 53@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 44 -- 50@LB@ |
| 50 |
0.003719 |
0.237 |
b3705 |
yidC |
-9.36 |
0.163545 |
61 -- 100 |
7 -- 65 |
membrane protein insertase |
|
_____________60__________________________________________________________101\n_____________|___________________________________________________________|\n5'-CGC...GCUAC____UU____A____U____CA_____________________________________GUUGG...CCC-3'\n______________GGAA_____G_GGCA_UGCG__GGUUU___GGA___________GUGAUA__AAAGGCA\n______________||||_____|_||||_|||:__||:::___:||___________||||:|__|||||||\n______________CCUU_____C_CCGU_ACGU__CCGGG___UCU___________CACUGU__UUUCCGU\n3'-UUU...UACAA____UUAGU_A____U____UA_____UUG___UUUAUUUUAGA______UA_______AUAUUG-5'\n_____________|___________________________________________________________|\n_____________66__________________________________________________________6\n |
94 -- 100 |
7 -- 13 |
-30.9326 kcal/mol |
9.41756 kcal/mol |
12.1538 kcal/mol |
60 101@LB@ | |@LB@5'-CGC...GCUAC UU A U CA GUUGG...CCC-3'@LB@ GGAA G GGCA UGCG GGUUU GGA GUGAUA AAAGGCA@LB@ |||| | |||| |||: ||::: :|| ||||:| |||||||@LB@ CCUU C CCGU ACGU CCGGG UCU CACUGU UUUCCGU@LB@3'-UUU...UACAA UUAGU A U UA UUG UUUAUUUUAGA UA AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -9.36 kcal/mol@LB@Hybridization Energy -30.9326 kcal/mol@LB@Unfolding Energy - mRNA 9.41756 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 61 -- 100@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 125 |
0.01291 |
0.3474 |
b3006 |
exbB |
-11.08 |
0.071576 |
189 -- 220 |
46 -- 66 |
membrane spanning protein in TonB-ExbB-ExbD complex |
|
_____________188______________________________221\n_____________|________________________________|\n5'-CGC...CGUCC______UACA______GUAAUAAUU_______GACGG...CCU-3'\n______________UGGAGA____CAGUGG_________UAAUGCA\n______________||||:|____||||||_________:||||||\n______________ACCUUU____GUCACC_________GUUACGU\n3'-UUU...AUACA______UA________________________UACCG...UUG-5'\n_____________|________________________________|\n_____________67_______________________________45\n |
214 -- 220 |
46 -- 52 |
-19.4381 kcal/mol |
4.26886 kcal/mol |
4.08842 kcal/mol |
188 221@LB@ | |@LB@5'-CGC...CGUCC UACA GUAAUAAUU GACGG...CCU-3'@LB@ UGGAGA CAGUGG UAAUGCA@LB@ ||||:| |||||| :||||||@LB@ ACCUUU GUCACC GUUACGU@LB@3'-UUU...AUACA UA UACCG...UUG-5'@LB@ | |@LB@ 67 45@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.4381 kcal/mol@LB@Unfolding Energy - mRNA 4.26886 kcal/mol@LB@Unfolding Energy - sRNA 4.08842 kcal/mol@LB@@LB@Position - mRNA 189 -- 220@LB@Position - sRNA 46 -- 66@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 13 |
0.0005138 |
0.1268 |
b0055 |
djlA |
-16.40 |
0.003186 |
213 -- 240 |
39 -- 65 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________212__________________________241\n_____________|____________________________|\n5'-GAC...AUUGG__A_______U_____UG__C_______UACUG...UUG-3'\n______________GG_AAAAUCA_UGGCG__GC_GUGGCCU\n______________||_|||||||_||||:__||_:|||||:\n______________CC_UUUUAGU_ACCGU__CG_UACCGGG\n3'-UUU...UACAA__________C_____UA__U_______UUGUC...UUG-5'\n_____________|____________________________|\n_____________66___________________________38\n |
234 -- 240 |
39 -- 45 |
-30.8595 kcal/mol |
7.7929 kcal/mol |
6.66922 kcal/mol |
212 241@LB@ | |@LB@5'-GAC...AUUGG A U UG C UACUG...UUG-3'@LB@ GG AAAAUCA UGGCG GC GUGGCCU@LB@ || ||||||| ||||: || :|||||:@LB@ CC UUUUAGU ACCGU CG UACCGGG@LB@3'-UUU...UACAA C UA U UUGUC...UUG-5'@LB@ | |@LB@ 66 38@LB@@LB@@LB@Energy -16.40 kcal/mol@LB@Hybridization Energy -30.8595 kcal/mol@LB@Unfolding Energy - mRNA 7.7929 kcal/mol@LB@Unfolding Energy - sRNA 6.66922 kcal/mol@LB@@LB@Position - mRNA 213 -- 240@LB@Position - sRNA 39 -- 65@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 129 |
0.01395 |
0.3636 |
b2314 |
dedD |
-15.05 |
0.007607 |
192 -- 211 |
45 -- 65 |
membrane-anchored periplasmic protein involved in septation |
|
_____________191___________________212\n_____________|_____________________|\n5'-UUG...CGCGA______G______________GUUUC...AUU-3'\n______________GGAGAA_CGGUGGCAA_GUAA\n______________|||:||_|:|||||||_|:||\n______________CCUUUU_GUCACCGUU_CGUU\n3'-UUU...UACAA______A_________A____ACCGG...UUG-5'\n_____________|_____________________|\n_____________66____________________44\n |
201 -- 207 |
50 -- 56 |
-23.8601 kcal/mol |
4.54883 kcal/mol |
4.26469 kcal/mol |
191 212@LB@ | |@LB@5'-UUG...CGCGA G GUUUC...AUU-3'@LB@ GGAGAA CGGUGGCAA GUAA@LB@ |||:|| |:||||||| |:||@LB@ CCUUUU GUCACCGUU CGUU@LB@3'-UUU...UACAA A A ACCGG...UUG-5'@LB@ | |@LB@ 66 44@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -23.8601 kcal/mol@LB@Unfolding Energy - mRNA 4.54883 kcal/mol@LB@Unfolding Energy - sRNA 4.26469 kcal/mol@LB@@LB@Position - mRNA 192 -- 211@LB@Position - sRNA 45 -- 65@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 75 |
0.006388 |
0.2822 |
b2813 |
mltA |
-10.80 |
0.082551 |
232 -- 252 |
47 -- 66 |
membrane-bound lytic murein transglycosylase A |
|
_____________231____________________253\n_____________|______________________|\n5'-UGC...UCUUA____CAC_______________UUGCC...AAG-3'\n______________UGGG___GGUU_GUGGCAAUGC\n______________|||:___::|:_||||||||||\n______________ACCU___UUAG_CACCGUUACG\n3'-UUU...AUACA____U______U__________UUACC...UUG-5'\n_____________|______________________|\n_____________67_____________________46\n |
246 -- 252 |
47 -- 53 |
-21.5988 kcal/mol |
6.72365 kcal/mol |
4.0775 kcal/mol |
231 253@LB@ | |@LB@5'-UGC...UCUUA CAC UUGCC...AAG-3'@LB@ UGGG GGUU GUGGCAAUGC@LB@ |||: ::|: ||||||||||@LB@ ACCU UUAG CACCGUUACG@LB@3'-UUU...AUACA U U UUACC...UUG-5'@LB@ | |@LB@ 67 46@LB@@LB@@LB@Energy -10.80 kcal/mol@LB@Hybridization Energy -21.5988 kcal/mol@LB@Unfolding Energy - mRNA 6.72365 kcal/mol@LB@Unfolding Energy - sRNA 4.0775 kcal/mol@LB@@LB@Position - mRNA 232 -- 252@LB@Position - sRNA 47 -- 66@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 86 |
0.007534 |
0.2889 |
b0189 |
rof |
-5.95 |
0.582576 |
103 -- 121 |
40 -- 57 |
modulator of Rho-dependent transcription termination |
|
_____________102_________________122\n_____________|___________________|\n5'-AGG...UUGAA____CUG____A_______GCCGA...GCG-3'\n______________AGUG___AAUG_AAUGGCU\n______________||||___||||_||||||:\n______________UCAC___UUAC_UUACCGG\n3'-UUU...UUUAG____CG_____G_______GUUGU...UUG-5'\n_____________|___________________|\n_____________58__________________39\n |
115 -- 121 |
40 -- 46 |
-14.9441 kcal/mol |
3.94739 kcal/mol |
5.04912 kcal/mol |
102 122@LB@ | |@LB@5'-AGG...UUGAA CUG A GCCGA...GCG-3'@LB@ AGUG AAUG AAUGGCU@LB@ |||| |||| ||||||:@LB@ UCAC UUAC UUACCGG@LB@3'-UUU...UUUAG CG G GUUGU...UUG-5'@LB@ | |@LB@ 58 39@LB@@LB@@LB@Energy -5.95 kcal/mol@LB@Hybridization Energy -14.9441 kcal/mol@LB@Unfolding Energy - mRNA 3.94739 kcal/mol@LB@Unfolding Energy - sRNA 5.04912 kcal/mol@LB@@LB@Position - mRNA 103 -- 121@LB@Position - sRNA 40 -- 57@LB@Position Seed - mRNA 115 -- 121@LB@Position Seed - sRNA 40 -- 46@LB@ |
| 166 |
0.01968 |
0.3987 |
b0784 |
moaD |
-8.29 |
0.259720 |
116 -- 144 |
39 -- 53 |
molybdopterin synthase small subunit |
|
_____________115___________________________145\n_____________|_____________________________|\n5'-GCA...GCAAA_________AAAGAUAUGGUGAU______GGUAC...AGC-3'\n______________GCGGUGCAA______________UGGUCC\n______________||::|||||______________|||:||\n______________CGUUACGUU______________ACCGGG\n3'-UUU...GUCAC_____________________________UUGUC...UUG-5'\n_____________|_____________________________|\n_____________54____________________________38\n |
118 -- 124 |
45 -- 51 |
-19.827 kcal/mol |
6.7839 kcal/mol |
4.75794 kcal/mol |
115 145@LB@ | |@LB@5'-GCA...GCAAA AAAGAUAUGGUGAU GGUAC...AGC-3'@LB@ GCGGUGCAA UGGUCC@LB@ ||::||||| |||:||@LB@ CGUUACGUU ACCGGG@LB@3'-UUU...GUCAC UUGUC...UUG-5'@LB@ | |@LB@ 54 38@LB@@LB@@LB@Energy -8.29 kcal/mol@LB@Hybridization Energy -19.827 kcal/mol@LB@Unfolding Energy - mRNA 6.7839 kcal/mol@LB@Unfolding Energy - sRNA 4.75794 kcal/mol@LB@@LB@Position - mRNA 116 -- 144@LB@Position - sRNA 39 -- 53@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 127 |
0.01373 |
0.3614 |
b0463 |
acrA |
-13.78 |
0.016343 |
252 -- 289 |
8 -- 54 |
multidrug efflux system |
|
_____________251________________________________________________290\n_____________|__________________________________________________|\n5'-GCC...UCUCA________UUA_____U________________________C__AC____CCAAC...GUG-3'\n______________GGCA__GC____GCCC_AACAGGA_________UGUGACGA_AA__AGGC\n______________||||__||____||||_|||||:|_________||||||:|_||__||||\n______________CCGU__CG____CGGG_UUGUCUU_________ACACUGUU_UU__UCCG\n3'-UUU...AGUCA____UA__UUAC____________UUAUUUUAG________A________UAUAUUG-5'\n_____________|__________________________________________________|\n_____________55_________________________________________________7\n |
274 -- 280 |
15 -- 21 |
-34.7713 kcal/mol |
8.97181 kcal/mol |
12.019 kcal/mol |
251 290@LB@ | |@LB@5'-GCC...UCUCA UUA U C AC CCAAC...GUG-3'@LB@ GGCA GC GCCC AACAGGA UGUGACGA AA AGGC@LB@ |||| || |||| |||||:| ||||||:| || ||||@LB@ CCGU CG CGGG UUGUCUU ACACUGUU UU UCCG@LB@3'-UUU...AGUCA UA UUAC UUAUUUUAG A UAUAUUG-5'@LB@ | |@LB@ 55 7@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -34.7713 kcal/mol@LB@Unfolding Energy - mRNA 8.97181 kcal/mol@LB@Unfolding Energy - sRNA 12.019 kcal/mol@LB@@LB@Position - mRNA 252 -- 289@LB@Position - sRNA 8 -- 54@LB@Position Seed - mRNA 274 -- 280@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 49 |
0.003464 |
0.237 |
b4260 |
pepA |
-9.32 |
0.166975 |
186 -- 204 |
42 -- 59 |
multifunctional aminopeptidase A: a cyteinylglycinase transcription regulator and site-specific recombination factor |
|
_____________185__________________205\n_____________|____________________|\n5'-UUA...AAGAU____GA_C____________AGUUU...AAC-3'\n______________UCAG__G_GUAGUGCA_UGG\n______________||||__|_|:|:||||_|||\n______________AGUC__C_CGUUACGU_ACC\n3'-UUU...CUUUU____A___________U___GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
195 -- 201 |
46 -- 52 |
-17.4947 kcal/mol |
4.48384 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-UUA...AAGAU GA C AGUUU...AAC-3'@LB@ UCAG G GUAGUGCA UGG@LB@ |||| | |:|:|||| |||@LB@ AGUC C CGUUACGU ACC@LB@3'-UUU...CUUUU A U GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -17.4947 kcal/mol@LB@Unfolding Energy - mRNA 4.48384 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 46 -- 52@LB@ |
