183 |
0.004788 |
0.1199 |
pa0638 |
N/A |
-13.00 |
0.036234 |
1 -- 21 |
40 -- 62 |
bacteriophage protein |
|
______________1______________________22\n______________|______________________|\n___________5'-__G____________________GAUCG...UCC-3'\n______________GC_UACCGGC_GAUCUCGCG_CU\n______________||_|||||||_|||||||||_|:\n______________CG_AUGGCCG_CUAGAGCGC_GG\n3'-UUU...AGAGU__A_______A_________U__UCAAC...GUU-5'\n_____________|_______________________|\n_____________63______________________39\n |
13 -- 19 |
43 -- 49 |
-33.0928 kcal/mol |
8.24856 kcal/mol |
11.8411 kcal/mol |
1 22@LB@ | |@LB@ 5'- G GAUCG...UCC-3'@LB@ GC UACCGGC GAUCUCGCG CU@LB@ || ||||||| ||||||||| |:@LB@ CG AUGGCCG CUAGAGCGC GG@LB@3'-UUU...AGAGU A A U UCAAC...GUU-5'@LB@ | |@LB@ 63 39@LB@@LB@@LB@Energy -13.00 kcal/mol@LB@Hybridization Energy -33.0928 kcal/mol@LB@Unfolding Energy - mRNA 8.24856 kcal/mol@LB@Unfolding Energy - sRNA 11.8411 kcal/mol@LB@@LB@Position - mRNA 1 -- 21@LB@Position - sRNA 40 -- 62@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 43 -- 49@LB@ |
81 |
0.0009408 |
0.05338 |
pa2962 |
tmk |
-12.93 |
0.037833 |
94 -- 116 |
34 -- 55 |
thymidylate kinase |
|
_____________93________________________117\n_____________|_________________________|\n5'-CGC...AACAA______________GUA________AGCGU...AGG-3'\n______________GGC_GGUC_CGCGA___CCAGUUGA\n______________|||_|:||_|||||___||||||||\n______________CCG_CUAG_GCGCU___GGUCAACU\n3'-UUU...AAUGG___A____A________________CACUG...GUU-5'\n_____________|_________________________|\n_____________56________________________33\n |
110 -- 116 |
34 -- 40 |
-28.5201 kcal/mol |
7.46572 kcal/mol |
8.1291 kcal/mol |
93 117@LB@ | |@LB@5'-CGC...AACAA GUA AGCGU...AGG-3'@LB@ GGC GGUC CGCGA CCAGUUGA@LB@ ||| |:|| ||||| ||||||||@LB@ CCG CUAG GCGCU GGUCAACU@LB@3'-UUU...AAUGG A A CACUG...GUU-5'@LB@ | |@LB@ 56 33@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -28.5201 kcal/mol@LB@Unfolding Energy - mRNA 7.46572 kcal/mol@LB@Unfolding Energy - sRNA 8.1291 kcal/mol@LB@@LB@Position - mRNA 94 -- 116@LB@Position - sRNA 34 -- 55@LB@Position Seed - mRNA 110 -- 116@LB@Position Seed - sRNA 34 -- 40@LB@ |
189 |
0.005044 |
0.1227 |
pa4284 |
recB |
-12.92 |
0.038081 |
40 -- 56 |
70 -- 89 |
exodeoxyribonuclease V subunit beta |
|
_____________39___________________57\n_____________|____________________|\n5'-CCC...ACGAG____________A_______GGGCG...UCA-3'\n______________GGAGGGUUCGGC____UGGG\n______________|:||:||:||:|____||||\n______________CUUCUCAGGCUG____ACCC\n3'-UUU...UUAGA____________ACGC____AGAGA...GUU-5'\n_____________|____________________|\n_____________90___________________69\n |
45 -- 51 |
78 -- 84 |
-22.2148 kcal/mol |
3.43278 kcal/mol |
5.86471 kcal/mol |
39 57@LB@ | |@LB@5'-CCC...ACGAG A GGGCG...UCA-3'@LB@ GGAGGGUUCGGC UGGG@LB@ |:||:||:||:| ||||@LB@ CUUCUCAGGCUG ACCC@LB@3'-UUU...UUAGA ACGC AGAGA...GUU-5'@LB@ | |@LB@ 90 69@LB@@LB@@LB@Energy -12.92 kcal/mol@LB@Hybridization Energy -22.2148 kcal/mol@LB@Unfolding Energy - mRNA 3.43278 kcal/mol@LB@Unfolding Energy - sRNA 5.86471 kcal/mol@LB@@LB@Position - mRNA 40 -- 56@LB@Position - sRNA 70 -- 89@LB@Position Seed - mRNA 45 -- 51@LB@Position Seed - sRNA 78 -- 84@LB@ |
40 |
0.0001908 |
0.02192 |
pa5015 |
aceE |
-12.88 |
0.038887 |
273 -- 297 |
101 -- 123 |
pyruvate dehydrogenase subunit E1 |
|
_____________272________________________298\n_____________|__________________________|\n5'-CCU...AAGGU________C_CUC_____________CCC-3'\n______________GAAGACCG_G___AUUA_CCUGAUGA\n______________:||:||||_|___||||_||||||||\n______________UUUUUGGC_C___UAAU_GGACUACU\n3'-UUU...CCCAG________A________C________CCUCU...GUU-5'\n_____________|__________________________|\n_____________124________________________100\n |
291 -- 297 |
101 -- 107 |
-21.2393 kcal/mol |
6.11337 kcal/mol |
2.24445 kcal/mol |
272 298@LB@ | |@LB@5'-CCU...AAGGU C CUC CCC-3'@LB@ GAAGACCG G AUUA CCUGAUGA@LB@ :||:|||| | |||| ||||||||@LB@ UUUUUGGC C UAAU GGACUACU@LB@3'-UUU...CCCAG A C CCUCU...GUU-5'@LB@ | |@LB@ 124 100@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -21.2393 kcal/mol@LB@Unfolding Energy - mRNA 6.11337 kcal/mol@LB@Unfolding Energy - sRNA 2.24445 kcal/mol@LB@@LB@Position - mRNA 273 -- 297@LB@Position - sRNA 101 -- 123@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 101 -- 107@LB@ |
79 |
0.0008761 |
0.05078 |
pa2577 |
N/A |
-12.88 |
0.038908 |
242 -- 256 |
40 -- 55 |
transcriptional regulator |
|
_____________241______________257\n_____________|________________|\n5'-CCA...CUCAU________________GUCCC...CGA-3'\n______________GGCUGA_CUCGCGACU\n______________||||||_||||||||:\n______________CCGACU_GAGCGCUGG\n3'-UUU...AAUGG______A_________UCAAC...GUU-5'\n_____________|________________|\n_____________56_______________39\n |
250 -- 256 |
40 -- 46 |
-27.0793 kcal/mol |
6.12113 kcal/mol |
8.07531 kcal/mol |
241 257@LB@ | |@LB@5'-CCA...CUCAU GUCCC...CGA-3'@LB@ GGCUGA CUCGCGACU@LB@ |||||| ||||||||:@LB@ CCGACU GAGCGCUGG@LB@3'-UUU...AAUGG A UCAAC...GUU-5'@LB@ | |@LB@ 56 39@LB@@LB@@LB@Energy -12.88 kcal/mol@LB@Hybridization Energy -27.0793 kcal/mol@LB@Unfolding Energy - mRNA 6.12113 kcal/mol@LB@Unfolding Energy - sRNA 8.07531 kcal/mol@LB@@LB@Position - mRNA 242 -- 256@LB@Position - sRNA 40 -- 55@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 40 -- 46@LB@ |
191 |
0.005174 |
0.1243 |
pa4409 |
ftsQ |
-12.87 |
0.039132 |
188 -- 243 |
45 -- 102 |
cell division protein FtsQ |
|
_____________187__________________________________________________________244\n_____________|____________________________________________________________|\n5'-ACG...GAGGC__________GCCA____U____GU_____UCC____A______AAC_____G_______GCCGC...AAC-3'\n______________GAGGGGAUAA____UGAA_GG_C__ACUGC____GUC__UCAGC___CCGGU_GA_CUCG\n______________||||:|||||____||||_:|_|__|||||____|||__|||||___||||:_||_||||\n______________CUCCUCUAUU____ACUU_UC_G__UGACG____CAG__AGUCG___GGCCG_CU_GAGC\n3'-UUU...GACUA__________AG______C__A_GC_____CACC___AG_____AAU_____A__A____GCUGG...GUU-5'\n_____________|____________________________________________________________|\n_____________103__________________________________________________________44\n |
190 -- 196 |
94 -- 100 |
-51.9774 kcal/mol |
17.8775 kcal/mol |
21.2308 kcal/mol |
187 244@LB@ | |@LB@5'-ACG...GAGGC GCCA U GU UCC A AAC G GCCGC...AAC-3'@LB@ GAGGGGAUAA UGAA GG C ACUGC GUC UCAGC CCGGU GA CUCG@LB@ ||||:||||| |||| :| | ||||| ||| ||||| ||||: || ||||@LB@ CUCCUCUAUU ACUU UC G UGACG CAG AGUCG GGCCG CU GAGC@LB@3'-UUU...GACUA AG C A GC CACC AG AAU A A GCUGG...GUU-5'@LB@ | |@LB@ 103 44@LB@@LB@@LB@Energy -12.87 kcal/mol@LB@Hybridization Energy -51.9774 kcal/mol@LB@Unfolding Energy - mRNA 17.8775 kcal/mol@LB@Unfolding Energy - sRNA 21.2308 kcal/mol@LB@@LB@Position - mRNA 188 -- 243@LB@Position - sRNA 45 -- 102@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 94 -- 100@LB@ |
37 |
0.0001556 |
0.01933 |
pa4880 |
N/A |
-12.85 |
0.039617 |
174 -- 244 |
39 -- 119 |
bacterioferritin |
|
_____________173_____________________________________________________________________________________245\n_____________|_______________________________________________________________________________________|\n5'-CGC...UUUUC________C_____CA________A____C__U__CCACC____A____A__GAC________________________________UGCCC...GCC-3'\n______________ACCG_GAU_AGCCU____AGGAGA_AA_C_GA_GA_____GUUC_ACUG_CG___GUC___CAG___ACC__CU____UCGCGACCG\n______________||||_|||_|||||____||||||_||_|_||_||_____||:|_||||_||___|||___|||___|||__||____||||||||:\n______________UGGC_CUA_UCGGA____UCCUCU_UU_G_CU_CU_____CAGG_UGAC_GC___CAG___GUC___UGG__GA____AGCGCUGGU\n3'-UUU...GUUUU____A___A_____CUAC______A__A_A__U___________C_______ACC___AGA___GAA___CC__CUAG_________CAACU...GUU-5'\n_____________|_______________________________________________________________________________________|\n_____________120_____________________________________________________________________________________38\n |
238 -- 244 |
39 -- 45 |
-53.1463 kcal/mol |
16.8944 kcal/mol |
23.4063 kcal/mol |
173 245@LB@ | |@LB@5'-CGC...UUUUC C CA A C U CCACC A A GAC UGCCC...GCC-3'@LB@ ACCG GAU AGCCU AGGAGA AA C GA GA GUUC ACUG CG GUC CAG ACC CU UCGCGACCG@LB@ |||| ||| ||||| |||||| || | || || ||:| |||| || ||| ||| ||| || ||||||||:@LB@ UGGC CUA UCGGA UCCUCU UU G CU CU CAGG UGAC GC CAG GUC UGG GA AGCGCUGGU@LB@3'-UUU...GUUUU A A CUAC A A A U C ACC AGA GAA CC CUAG CAACU...GUU-5'@LB@ | |@LB@ 120 38@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -53.1463 kcal/mol@LB@Unfolding Energy - mRNA 16.8944 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 174 -- 244@LB@Position - sRNA 39 -- 119@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 39 -- 45@LB@ |
165 |
0.004162 |
0.1159 |
pa1850 |
N/A |
-12.78 |
0.041348 |
242 -- 255 |
104 -- 117 |
transcriptional regulator |
|
_____________241____________256\n_____________|______________|\n5'-AUA...CCCGA______G_______ACGUG...AAC-3'\n______________CGUGAU_AGCCUGG\n______________||||||_||||||:\n______________GCACUA_UCGGACU\n3'-UUU...UUUUG______A_______ACUCC...GUU-5'\n_____________|______________|\n_____________118____________103\n |
249 -- 255 |
104 -- 110 |
-19.8167 kcal/mol |
4.81117 kcal/mol |
2.2292 kcal/mol |
241 256@LB@ | |@LB@5'-AUA...CCCGA G ACGUG...AAC-3'@LB@ CGUGAU AGCCUGG@LB@ |||||| ||||||:@LB@ GCACUA UCGGACU@LB@3'-UUU...UUUUG A ACUCC...GUU-5'@LB@ | |@LB@ 118 103@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -19.8167 kcal/mol@LB@Unfolding Energy - mRNA 4.81117 kcal/mol@LB@Unfolding Energy - sRNA 2.2292 kcal/mol@LB@@LB@Position - mRNA 242 -- 255@LB@Position - sRNA 104 -- 117@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 104 -- 110@LB@ |
100 |
0.001607 |
0.07384 |
pa0607 |
rpe |
-12.76 |
0.041806 |
177 -- 194 |
99 -- 118 |
ribulose-phosphate 3-epimerase |
|
_____________176__________________195\n_____________|____________________|\n5'-CCG...GCCUU_______CC____U______UGCGC...UUC-3'\n______________CCGUGAU___CCU__UGAGG\n______________|||||||___|||__|||||\n______________GGCACUA___GGA__ACUCC\n3'-UUU...UUUUU_______AUC___CU_____UCUAU...GUU-5'\n_____________|____________________|\n_____________119__________________98\n |
177 -- 183 |
112 -- 118 |
-19.2108 kcal/mol |
4.20353 kcal/mol |
2.24947 kcal/mol |
176 195@LB@ | |@LB@5'-CCG...GCCUU CC U UGCGC...UUC-3'@LB@ CCGUGAU CCU UGAGG@LB@ ||||||| ||| |||||@LB@ GGCACUA GGA ACUCC@LB@3'-UUU...UUUUU AUC CU UCUAU...GUU-5'@LB@ | |@LB@ 119 98@LB@@LB@@LB@Energy -12.76 kcal/mol@LB@Hybridization Energy -19.2108 kcal/mol@LB@Unfolding Energy - mRNA 4.20353 kcal/mol@LB@Unfolding Energy - sRNA 2.24947 kcal/mol@LB@@LB@Position - mRNA 177 -- 194@LB@Position - sRNA 99 -- 118@LB@Position Seed - mRNA 177 -- 183@LB@Position Seed - sRNA 112 -- 118@LB@ |
48 |
0.0003226 |
0.03063 |
pa2507 |
catA |
-12.73 |
0.042466 |
203 -- 291 |
39 -- 120 |
catechol 1 2-dioxygenase |
|
_____________202_______________________________________________________________________________________________292\n_____________|_________________________________________________________________________________________________|\n5'-AUC...GCCAU________AGAUUUCCCAGACU________UCC__CGCU___UC______G__A______GCCAG______A_GA__G______________C____AGGCC...UGG-3'\n______________GACCGUGA______________GCC_GAUG___AG____UCU__GAAGAG_CC____GCG_______CUCA_C__AC_CGGC_GAUC_CGCG_ACCA\n______________:|||||||______________|||_||||___||____|||__||||||_||____|||_______||||_|__||_||||_||||_||||_||||\n______________UUGGCACU______________CGG_CUAC___UC____AGA__CUUCUC_GG____CGC_______GAGU_G__UG_GCCG_CUAG_GCGC_UGGU\n3'-UUU...AGUUU________AAU______________A____UCC__UAUU___________A__CUGA___ACCCAGA____C_AA_______A____A_________CAACU...GUU-5'\n_____________|_________________________________________________________________________________________________|\n_____________121_______________________________________________________________________________________________38\n |
204 -- 210 |
113 -- 119 |
-61.825 kcal/mol |
25.692 kcal/mol |
23.4063 kcal/mol |
202 292@LB@ | |@LB@5'-AUC...GCCAU AGAUUUCCCAGACU UCC CGCU UC G A GCCAG A GA G C AGGCC...UGG-3'@LB@ GACCGUGA GCC GAUG AG UCU GAAGAG CC GCG CUCA C AC CGGC GAUC CGCG ACCA@LB@ :||||||| ||| |||| || ||| |||||| || ||| |||| | || |||| |||| |||| ||||@LB@ UUGGCACU CGG CUAC UC AGA CUUCUC GG CGC GAGU G UG GCCG CUAG GCGC UGGU@LB@3'-UUU...AGUUU AAU A UCC UAUU A CUGA ACCCAGA C AA A A CAACU...GUU-5'@LB@ | |@LB@ 121 38@LB@@LB@@LB@Energy -12.73 kcal/mol@LB@Hybridization Energy -61.825 kcal/mol@LB@Unfolding Energy - mRNA 25.692 kcal/mol@LB@Unfolding Energy - sRNA 23.4063 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 39 -- 120@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 113 -- 119@LB@ |